Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 4.1e-208 728.0 417 100.0
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 3.4e-191 671.8 417 93.5
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.0e-187 660.2 417 93.8
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 1.4e-168 596.7 421 86.2
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 1.8e-147 526.6 423 78.0
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 2.5e-141 506.1 421 74.6
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 2.5e-141 506.1 421 74.6
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 3.4e-138 495.7 423 72.3
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 1.7e-137 493.4 454 72.2
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.7e-137 493.4 421 74.1
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 8.4e-129 464.5 424 70.8
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.2e-128 462.6 455 67.9
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 7.1e-128 461.5 425 68.0
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.6e-122 443.0 471 64.1
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.1e-111 406.8 361 71.5
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.3e-110 404.1 443 63.4
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 1.9e-109 400.2 434 58.1
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.8e-107 393.7 439 60.6
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 3.3e-101 372.9 364 67.3
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.4e-83 314.3 427 48.7
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.7e-81 307.4 468 50.9
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 2.2e-81 307.0 430 45.8
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 3.2e-80 303.1 432 46.1
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.7e-79 300.1 432 45.1
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 4.6e-79 299.3 381 49.6
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 7.9e-79 298.5 430 45.1
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 1.8e-78 297.4 428 46.5
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 2.3e-78 297.0 402 47.0
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 2.3e-78 297.0 428 46.5
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 5.1e-78 295.8 430 45.3
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 6.7e-78 295.4 479 49.7
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 3.3e-77 293.1 508 48.2
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 3.3e-77 293.1 426 46.5
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.3e-77 293.1 441 43.8
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 7.4e-77 292.0 439 44.4
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 9.7e-77 291.6 400 47.2
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 1.3e-76 291.2 434 44.2
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.3e-76 291.2 459 46.2
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.2e-76 290.4 484 47.9
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 3.7e-76 289.7 429 45.2
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 4.8e-76 289.3 406 45.3
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 6.3e-76 288.9 403 46.4
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.1e-75 288.1 441 51.2
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 2.4e-75 287.0 412 46.1
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.4e-75 287.0 495 47.7
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 3.1e-75 286.6 426 43.7
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.5e-74 284.3 461 49.5
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.7e-73 280.8 405 44.9
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 2.2e-73 280.4 425 44.0
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.9e-73 280.0 480 48.1
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 2.9e-73 280.0 367 47.4
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 3.8e-73 279.6 429 43.8
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 3.8e-73 279.6 431 42.5
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.4e-72 277.7 432 43.1
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 3.2e-72 276.6 518 46.3
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 5.5e-72 275.8 433 47.1
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 7.2e-72 275.4 426 42.7
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 7.2e-72 275.4 434 44.2
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 9.4e-72 275.0 420 51.7
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.6e-71 274.2 452 48.9
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 3.6e-71 273.1 472 47.9
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 4.7e-71 272.7 473 41.6
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 4.7e-71 272.7 366 54.4
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 6.1e-71 272.3 407 45.0
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.1e-71 272.3 472 47.9
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 7.9e-71 271.9 463 48.2
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 7.9e-71 271.9 440 42.0
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 1.4e-70 271.2 433 41.6
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.2e-70 269.2 436 42.0
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 6.7e-70 268.9 437 41.9
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 1.1e-69 268.1 518 44.8
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.1e-69 268.1 409 44.3
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.6e-69 266.9 509 44.8
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 4.4e-69 266.2 459 45.3
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 6.3e-68 262.3 436 40.6
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.4e-67 261.2 477 39.0
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 1.8e-67 260.8 357 45.4
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.1e-67 260.0 497 45.7
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 4.1e-67 259.6 505 45.9
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 7.0e-67 258.8 532 44.4
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 9.1e-67 258.5 495 45.3
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 1.2e-66 258.1 459 47.7
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.0e-66 257.3 506 45.3
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 3.5e-66 256.5 356 47.5
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.5e-66 256.5 505 45.7
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 7.7e-66 255.4 515 44.3
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 7.7e-66 255.4 490 45.7
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 3.8e-65 253.1 443 47.9
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 8.5e-65 251.9 357 46.5
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.5e-64 251.1 474 45.1
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 4.2e-64 249.6 419 49.2
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 7.2e-64 248.8 471 45.4
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 9.4e-64 248.4 525 39.4
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 3.6e-63 246.5 527 43.1
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 8.0e-63 245.4 449 39.2
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 4.0e-62 243.0 553 40.9
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 6.7e-62 242.3 464 45.7
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.2e-61 241.5 467 44.3
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 4.4e-61 239.6 405 40.2
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.3e-60 238.0 499 43.9
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.7e-60 237.7 505 42.0
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.7e-60 237.7 505 42.0
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.4e-59 234.6 401 39.9
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.8e-59 234.2 490 44.1
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 3.1e-59 233.4 425 39.5
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 4.1e-59 233.0 336 44.3
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 9.1e-59 231.9 431 38.5
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 3.5e-58 229.9 401 40.6
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 1.0e-57 228.4 592 37.2
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 2.5e-56 223.8 514 42.0
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 4.2e-56 223.0 374 39.0
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 7.2e-56 222.2 500 43.0
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 1.4e-54 218.0 468 35.5
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.4e-54 218.0 512 42.4
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 3.0e-54 216.9 597 35.5
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-48 198.0 195 56.9
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.9e-48 197.6 350 43.7
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 9.5e-48 195.3 162 63.6
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.6e-47 194.5 396 47.7
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 5.7e-45 186.0 133 75.9
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.5e-42 176.8 156 60.3
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.6e-40 169.5 171 57.3
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 2.3e-33 147.5 473 35.1
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 6.2e-31 139.4 203 44.3
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 7.5e-29 132.5 159 49.1
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.2e-28 131.0 306 35.9
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 1.5e-24 118.2 365 31.5
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 3.4e-21 107.1 144 45.1
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.3e-17 94.4 60 73.3
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 5.6e-16 89.7 65 56.9
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 2.4e-11 74.3 56 57.1
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 7.8e-10 69.3 104 40.4
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 2.3e-09 67.8 558 22.2


User provided reference genes

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