Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p34360 Brassica napus HOM05D000189 ORTHO05D023418 4.3e-30 134.0 70 100.0
BolC1t04867H Brassica oleracea HOM05D000189 ORTHO05D007610 8.8e-23 109.8 58 96.6
C01p49040 Brassica napus HOM05D000189 ORTHO05D007610 1.5e-22 109.0 58 96.6
A01p38740 Brassica napus HOM05D000189 ORTHO05D007610 3.3e-22 107.8 57 96.5
BraA01t03911Z Brassica rapa HOM05D000189 ORTHO05D007610 3.3e-22 107.8 57 96.5
BcaB04g20926 Brassica carinata HOM05D000189 ORTHO05D007610 4.8e-21 104.0 57 93.0
BcaC09g48507 Brassica carinata HOM05D000189 ORTHO05D023418 4.8e-21 104.0 57 93.0
Sp3g13680 Schrenkiella parvula HOM05D000189 ORTHO05D007610 3.4e-19 97.8 57 87.7
Thhalv10020606m.g Eutrema salsugineum HOM05D000189 ORTHO05D007610 5.9e-19 97.1 57 89.5
AL3G27980 Arabidopsis lyrata HOM05D000189 ORTHO05D007610 2.9e-18 94.7 57 84.2
BcaB06g29574 Brassica carinata HOM05D000189 ORTHO05D007610 8.5e-18 93.2 57 87.7
Aa31LG8G2670 Aethionema arabicum HOM05D000189 ORTHO05D007610 2.5e-17 91.7 57 84.2
AT3G15430 Arabidopsis thaliana HOM05D000189 ORTHO05D007610 4.2e-17 90.9 57 84.2
Carub.0003s1516 Capsella rubella HOM05D000189 ORTHO05D007610 3.6e-16 87.8 57 78.9
BcaC05g29009 Brassica carinata HOM05D000189 ORTHO05D007610 8.8e-15 83.2 58 79.3
BolC5t33859H Brassica oleracea HOM05D000189 ORTHO05D007610 8.8e-15 83.2 58 79.3
C05p51730 Brassica napus HOM05D000189 ORTHO05D007610 2.0e-14 82.0 58 77.6
A05p33980 Brassica napus HOM05D000189 ORTHO05D007610 3.3e-14 81.3 58 77.6
BraA05t22220Z Brassica rapa HOM05D000189 ORTHO05D007610 3.3e-14 81.3 58 77.6
Duzib170G0640 Durio zibethinus HOM05D000189 ORTHO05D007610 3.3e-14 81.3 59 74.6
THA.LOC104818063 Tarenaya hassleriana HOM05D000189 ORTHO05D007610 3.3e-14 81.3 63 68.3
Duzib213G0598 Durio zibethinus HOM05D000189 ORTHO05D007610 4.4e-14 80.9 59 74.6
CARHR090480 Cardamine hirsuta HOM05D000189 ORTHO05D007610 7.4e-14 80.1 43 90.7
Potri.011G121900 Populus trichocarpa HOM05D000189 ORTHO05D007610 7.4e-14 80.1 58 72.4
GSVIVG01014381001 Vitis vinifera HOM05D000189 ORTHO05D007610 9.7e-14 79.7 58 72.4
Ciclev10008120m.g Citrus clementina HOM05D000189 ORTHO05D007610 2.2e-13 78.6 58 72.4
COL.COLO4_09428 Corchorus olitorius HOM05D000189 ORTHO05D007610 2.8e-13 78.2 59 72.9
Thecc.07G077500 Theobroma cacao HOM05D000189 ORTHO05D007610 2.8e-13 78.2 59 72.9
TWI38G0123 Tripterygium wilfordii HOM05D000189 ORTHO05D007610 2.8e-13 78.2 58 67.2
TWI39G0466 Tripterygium wilfordii HOM05D000189 ORTHO05D007610 4.8e-13 77.4 58 67.2
Haze_09470 Corylus avellana HOM05D000189 ORTHO05D007610 6.3e-13 77.0 58 70.7
PGR083G1580 Punica granatum HOM05D000189 ORTHO05D007610 1.4e-12 75.9 59 66.1
Sabra11G0107900 Salix brachista HOM05D000189 ORTHO05D007610 1.8e-12 75.5 58 69.0
Atru.chr2.2730 Acer truncatum HOM05D000189 ORTHO05D007610 2.4e-12 75.1 58 69.0
Cpa.g.sc80.39 Carica papaya HOM05D000189 ORTHO05D007610 2.4e-12 75.1 71 63.4
CiPaw.12G120600 Carya illinoinensis HOM05D000189 ORTHO05D007610 2.4e-12 75.1 58 69.0
Sabra16G0264400 Salix brachista HOM05D000189 ORTHO05D007610 2.4e-12 75.1 58 69.0
Ah.04g165120 Amaranthus hybridus HOM05D000189 ORTHO05D007610 3.1e-12 74.7 50 72.0
Dinv04319 Davidia involucrata HOM05D000189 ORTHO05D023418 3.1e-12 74.7 71 62.0
Manes.03G113000 Manihot esculenta HOM05D000189 ORTHO05D007610 3.1e-12 74.7 58 67.2
CSS0028714 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D007610 5.3e-12 73.9 58 69.0
Cfa020551 Carpinus fangiana HOM05D000189 ORTHO05D007610 5.3e-12 73.9 58 69.0
Gorai.009G434600 Gossypium raimondii HOM05D000189 ORTHO05D007610 7.0e-12 73.6 59 69.5
arahy.Tifrunner.gnm1.ann1.80CN8K Arachis hypogaea HOM05D000189 ORTHO05D007610 9.1e-12 73.2 58 67.2
arahy.Tifrunner.gnm1.ann1.BL8T0D Arachis hypogaea HOM05D000189 ORTHO05D007610 9.1e-12 73.2 58 67.2
EL10Ac4g08130 Beta vulgaris HOM05D000189 ORTHO05D007610 9.1e-12 73.2 50 70.0
MD11G1243000 Malus domestica HOM05D000189 ORTHO05D007610 9.1e-12 73.2 51 74.5
QL08p019941 Quercus lobata HOM05D000189 ORTHO05D007610 9.1e-12 73.2 58 69.0
AUR62029360 Chenopodium quinoa HOM05D000189 ORTHO05D007610 1.2e-11 72.8 50 70.0
FAN16G0845 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.2e-11 72.8 51 74.5
FAN21G2912 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.2e-11 72.8 51 74.5
FAN25G0732 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.2e-11 72.8 51 74.5
Lalb_Chr01g0016951 Lupinus albus HOM05D000189 ORTHO05D007610 1.2e-11 72.8 58 65.5
AUR62034255 Chenopodium quinoa HOM05D000189 ORTHO05D007610 1.6e-11 72.4 50 70.0
Potri.001G402800 Populus trichocarpa HOM05D000189 ORTHO05D007610 1.6e-11 72.4 58 67.2
Prupe.4G185200 Prunus persica HOM05D000189 ORTHO05D007610 1.6e-11 72.4 57 68.4
FvH4_3g20530 Fragaria vesca HOM05D000189 ORTHO05D007610 2.0e-11 72.0 51 72.5
MBI18_g17007_MAGBIO Magnolia biondii HOM05D000189 ORTHO05D007610 2.0e-11 72.0 59 62.7
Eucgr.F01102 Eucalyptus grandis HOM05D000189 ORTHO05D007610 2.6e-11 71.6 71 57.7
Glyma.13G279000 Glycine max HOM05D000189 ORTHO05D007610 3.5e-11 71.2 58 63.8
Lj1g0026593 Lotus japonicus HOM05D000189 ORTHO05D007610 5.9e-11 70.5 58 60.3
Sc06g0006570 Simmondsia chinensis HOM05D000189 ORTHO05D007610 5.9e-11 70.5 58 60.3
TAR627G0923 Trochodendron aralioides HOM05D000189 ORTHO05D007610 5.9e-11 70.5 58 67.2
Ah.09g226840 Amaranthus hybridus HOM05D000189 ORTHO05D023418 7.7e-11 70.1 50 68.0
CANSAT56G1962 Cannabis sativa HOM05D000189 ORTHO05D007610 7.7e-11 70.1 58 69.0
CsaV3_4G033830 Cucumis sativus L. HOM05D000189 ORTHO05D007610 7.7e-11 70.1 55 72.7
Glyma.12G222600 Glycine max HOM05D000189 ORTHO05D007610 7.7e-11 70.1 58 62.1
Nn1g04025 Nelumbo nucifera HOM05D000189 ORTHO05D007610 1.0e-10 69.7 58 65.5
Medtr2g079610 Medicago truncatula HOM05D000189 ORTHO05D007610 1.3e-10 69.3 58 60.3
Nn1g06601 Nelumbo nucifera HOM05D000189 ORTHO05D007610 1.3e-10 69.3 71 56.3
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 1.7e-10 68.9 50 68.0
RcHm_v2.0_Chr5g0034451 Rosa chinensis HOM05D000189 ORTHO05D007610 1.7e-10 68.9 51 68.6
CAN.G162.73 Capsicum annuum HOM05D000189 ORTHO05D007610 2.2e-10 68.6 58 62.1
ClCG11G018180 Citrullus lanatus HOM05D000189 ORTHO05D007610 2.2e-10 68.6 55 70.9
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 2.2e-10 68.6 51 70.6
Lj8C158T4 Lonicera japonica HOM05D000189 ORTHO05D007610 2.2e-10 68.6 58 63.8
MELO3C016710.2 Cucumis melo HOM05D000189 ORTHO05D007610 3.8e-10 67.8 55 70.9
Peaxi162Scf00998g00019 Petunia axillaris HOM05D000189 ORTHO05D007610 3.8e-10 67.8 58 58.6
Gohir.D05G358740 Gossypium hirsutum HOM05D000189 ORTHO05D007610 5.0e-10 67.4 59 66.1
VMungo1080G0459 Vigna mungo HOM05D000189 ORTHO05D007610 5.0e-10 67.4 58 58.6
Actinidia05213 Actinidia chinensis HOM05D000189 ORTHO05D007610 6.5e-10 67.0 58 63.8
Sed0004906 Sechium edule HOM05D000189 ORTHO05D007610 6.5e-10 67.0 55 69.1
Hund22947 Selenicereus undatus HOM05D000189 ORTHO05D007610 1.5e-09 65.9 64 59.4
PGSC0003DMG400012425 Solanum tuberosum HOM05D000189 ORTHO05D007610 1.5e-09 65.9 58 60.3
Oeu037220.2 Olea europaea HOM05D000189 ORTHO05D007610 4.2e-09 64.3 58 58.6
PSO675G7556 Papaver somniferum HOM05D000189 ORTHO05D007610 4.2e-09 64.3 57 61.4
MSTRG.15218 Avicennia marina HOM05D000189 ORTHO05D007610 9.4e-09 63.2 71 57.7
Nitab4.5_0003769g0050 Nicotiana tabacum HOM05D000189 ORTHO05D007610 9.4e-09 63.2 58 60.3
PSO541G2036 Papaver somniferum HOM05D000189 ORTHO05D007610 9.4e-09 63.2 57 59.6
HPP92_028527 Vanilla planifolia HOM05D000189 ORTHO05D007610 1.6e-08 62.4 59 52.5
Solyc07g063300.3 Solanum lycopersicum HOM05D000189 ORTHO05D007610 2.7e-08 61.6 58 56.9
Migut.M00854 Erythranthe guttata HOM05D000189 ORTHO05D007610 3.6e-08 61.2 50 66.0
Psat5g245160 Pisum sativum HOM05D000189 ORTHO05D007610 6.1e-08 60.5 58 50.0
Sopen07g031470 Solanum pennellii HOM05D000189 ORTHO05D007610 6.1e-08 60.5 58 56.9
Cc05_g12320 Coffea canephora HOM05D000189 ORTHO05D007610 3.0e-07 58.2 58 55.2
DCAR_013089 Daucus carota HOM05D000189 ORTHO05D007610 4.0e-07 57.8 48 60.4
SGA_v2.0_scaffold73G24292 Striga asiatica HOM05D000189 ORTHO05D007610 5.2e-07 57.4 58 53.4
Aqoxy1G02540 Aquilegia oxysepala HOM05D000189 ORTHO05D007610 6.7e-07 57.0 58 50.0
vmacro11857 Vaccinium macrocarpon HOM05D000189 ORTHO05D007610 1.2e-06 56.2 50 58.0
Lsat_1_v5_gn_7_105101 Lactuca sativa HOM05D000189 ORTHO05D007610 1.5e-06 55.8 72 51.4
CDE02G4643 Ceratophyllum demersum HOM05D000189 ORTHO05D007610 3.3e-06 54.7 57 54.4
TPR.G38945 Trifolium pratense HOM05D000189 ORTHO05D007610 5.7e-06 53.9 49 57.1


User provided reference genes

Program Settings