Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p33400 Brassica napus HOM05D003710 ORTHO05D027240 3.6e-58 228.0 115 100.0
BcaC06g35724 Brassica carinata HOM05D003710 ORTHO05D027240 2.1e-53 212.2 115 93.0
C07p11640 Brassica napus HOM05D003710 ORTHO05D027240 2.3e-52 208.8 115 92.2
BolC9t54966H Brassica oleracea HOM05D003710 ORTHO05D005250 1.6e-45 186.0 106 90.6
BolC9t56177H Brassica oleracea HOM05D003710 ORTHO05D027240 2.1e-45 185.7 115 86.1
BcaB07g31272 Brassica carinata HOM05D003710 ORTHO05D005250 7.9e-45 183.7 106 89.6
BcaC04g22323 Brassica carinata HOM05D003710 ORTHO05D005250 1.0e-44 183.3 106 88.7
A09p16800 Brassica napus HOM05D003710 ORTHO05D005250 1.0e-44 183.3 106 88.7
C09p20690 Brassica napus HOM05D003710 ORTHO05D005250 1.0e-44 183.3 106 88.7
BraA09t37317Z Brassica rapa HOM05D003710 ORTHO05D005250 1.0e-44 183.3 106 88.7
Sp2g03150 Schrenkiella parvula HOM05D003710 ORTHO05D005250 4.8e-42 174.5 106 84.0
Thhalv10023383m.g Eutrema salsugineum HOM05D003710 ORTHO05D005250 6.2e-42 174.1 106 84.0
AL2G14980 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 9.0e-41 170.2 106 83.0
CARHR051290 Cardamine hirsuta HOM05D003710 ORTHO05D005250 1.2e-40 169.9 106 84.0
Carub.0002s0382 Capsella rubella HOM05D003710 ORTHO05D005250 1.5e-40 169.5 106 83.0
AT1G61350 Arabidopsis thaliana HOM05D003710 ORTHO05D005250 5.8e-40 167.5 106 82.1
Aa31LG2G9320 Aethionema arabicum HOM05D003710 ORTHO05D005250 1.9e-35 152.5 103 78.6
AL1G22280 Arabidopsis lyrata HOM05D003710 ORTHO05D005250 3.2e-30 135.2 105 67.6
THA.LOC104819023 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 7.1e-30 134.0 103 71.8
Carub.0001s1087 Capsella rubella HOM05D003710 ORTHO05D005250 2.7e-29 132.1 106 68.9
THA.LOC104809545 Tarenaya hassleriana HOM05D003710 ORTHO05D005250 7.9e-29 130.6 105 67.6
Thhalv10007228m.g Eutrema salsugineum HOM05D003710 ORTHO05D005250 1.8e-28 129.4 103 66.0
Sp1g09920 Schrenkiella parvula HOM05D003710 ORTHO05D005250 8.7e-28 127.1 104 66.3
Dinv40474 Davidia involucrata HOM05D003710 ORTHO05D005250 2.7e-21 105.5 103 51.5
Ciclev10014752m.g Citrus clementina HOM05D003710 ORTHO05D005250 1.0e-20 103.6 103 51.5
Dinv18991 Davidia involucrata HOM05D003710 ORTHO05D005250 3.9e-20 101.7 103 52.4
Gohir.A05G165800 Gossypium hirsutum HOM05D003710 ORTHO05D005250 3.9e-20 101.7 107 49.5
Gohir.D05G168800 Gossypium hirsutum HOM05D003710 ORTHO05D005250 5.1e-20 101.3 107 48.6
Gorai.009G174000 Gossypium raimondii HOM05D003710 ORTHO05D005250 5.1e-20 101.3 107 48.6
COL.COLO4_31591 Corchorus olitorius HOM05D003710 ORTHO05D005250 1.1e-19 100.1 103 52.4
Lalb_Chr18g0059951 Lupinus albus HOM05D003710 ORTHO05D005250 1.1e-19 100.1 103 48.5
Phvul.006G192500 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 9.7e-19 97.1 103 46.6
Hma1.2p1_0144F.1_g064590 Hydrangea macrophylla HOM05D003710 ORTHO05D005250 1.3e-18 96.7 106 50.0
CSS0031757 Camellia sinensis var. sinensis HOM05D003710 ORTHO05D005250 1.6e-18 96.3 103 50.5
Cpa.g.sc27.132 Carica papaya HOM05D003710 ORTHO05D005250 2.2e-18 95.9 103 50.5
Duzib160G0368 Durio zibethinus HOM05D003710 ORTHO05D005250 2.2e-18 95.9 97 51.5
Duzib235G1103 Durio zibethinus HOM05D003710 ORTHO05D005250 2.2e-18 95.9 103 49.5
TPR.G15384 Trifolium pratense HOM05D003710 ORTHO05D005250 2.2e-18 95.9 103 48.5
Glyma.13G246700 Glycine max HOM05D003710 ORTHO05D005250 3.7e-18 95.1 105 43.8
Gorai.011G023300 Gossypium raimondii HOM05D003710 ORTHO05D005250 4.8e-18 94.7 103 45.6
Thecc.06G200200 Theobroma cacao HOM05D003710 ORTHO05D005250 6.3e-18 94.4 103 49.5
Sabra04G0019500 Salix brachista HOM05D003710 ORTHO05D005250 8.2e-18 94.0 103 48.5
VMungo0540G1761 Vigna mungo HOM05D003710 ORTHO05D005250 8.2e-18 94.0 103 45.6
Medtr4g091320 Medicago truncatula HOM05D003710 ORTHO05D005250 1.4e-17 93.2 103 46.6
Gohir.D10G022200 Gossypium hirsutum HOM05D003710 ORTHO05D005250 1.8e-17 92.8 103 44.7
Lj6g0025319 Lotus japonicus HOM05D003710 ORTHO05D005250 1.8e-17 92.8 103 43.7
Nn1g03878 Nelumbo nucifera HOM05D003710 ORTHO05D005250 1.8e-17 92.8 103 50.5
Manes.16G020200 Manihot esculenta HOM05D003710 ORTHO05D005250 2.4e-17 92.4 103 45.6
Potri.004G033800 Populus trichocarpa HOM05D003710 ORTHO05D005250 2.4e-17 92.4 103 48.5
Glyma.15G067200 Glycine max HOM05D003710 ORTHO05D005250 3.1e-17 92.0 105 42.9
Manes.17G033200 Manihot esculenta HOM05D003710 ORTHO05D005250 4.1e-17 91.7 103 47.6
Glyma.07G189700 Glycine max HOM05D003710 ORTHO05D005250 6.9e-17 90.9 103 42.7
Ca_18478_v3 Cicer arietinum L. HOM05D003710 ORTHO05D005250 9.0e-17 90.5 103 45.6
Lj4g0027727 Lotus japonicus HOM05D003710 ORTHO05D005250 9.0e-17 90.5 103 45.6
Sabra11G0029000 Salix brachista HOM05D003710 ORTHO05D005250 9.0e-17 90.5 103 47.6
Sed0008753 Sechium edule HOM05D003710 ORTHO05D005250 9.0e-17 90.5 103 45.6
Cfa000347 Carpinus fangiana HOM05D003710 ORTHO05D005250 1.2e-16 90.1 103 48.5
Phvul.002G221300 Phaseolus vulgaris HOM05D003710 ORTHO05D005250 1.2e-16 90.1 97 47.4
Sed0006031 Sechium edule HOM05D003710 ORTHO05D005250 1.5e-16 89.7 103 47.6
Haze_06581 Corylus avellana HOM05D003710 ORTHO05D005250 2.0e-16 89.4 103 47.6
Lalb_Chr09g0327311 Lupinus albus HOM05D003710 ORTHO05D005250 2.0e-16 89.4 103 43.7
TWI38G2371 Tripterygium wilfordii HOM05D003710 ORTHO05D005250 2.0e-16 89.4 103 46.6
Atru.chr10.2018 Acer truncatum HOM05D003710 ORTHO05D005250 2.6e-16 89.0 103 45.6
MD10G1303900 Malus domestica HOM05D003710 ORTHO05D005250 2.6e-16 89.0 103 45.6
VMungo0251G0300 Vigna mungo HOM05D003710 ORTHO05D005250 2.6e-16 89.0 103 44.7
Gohir.A10G021400 Gossypium hirsutum HOM05D003710 ORTHO05D005250 4.5e-16 88.2 103 43.7
Lalb_Chr20g0122311 Lupinus albus HOM05D003710 ORTHO05D005250 7.7e-16 87.4 103 42.7
Psat7g108400 Pisum sativum HOM05D003710 ORTHO05D005250 7.7e-16 87.4 103 46.6
Sc17g0006660 Simmondsia chinensis HOM05D003710 ORTHO05D005250 7.7e-16 87.4 108 41.7
MELO3C002554.2 Cucumis melo HOM05D003710 ORTHO05D005250 1.0e-15 87.0 103 44.7
TWI38G1538 Tripterygium wilfordii HOM05D003710 ORTHO05D005250 1.3e-15 86.7 103 45.6
Potri.011G042300 Populus trichocarpa HOM05D003710 ORTHO05D005250 1.7e-15 86.3 103 46.6
QL05p081253 Quercus lobata HOM05D003710 ORTHO05D005250 1.7e-15 86.3 103 45.6
CANSAT56G1827 Cannabis sativa HOM05D003710 ORTHO05D005250 2.2e-15 85.9 103 44.7
Oeu038211.1 Olea europaea HOM05D003710 ORTHO05D005250 2.2e-15 85.9 105 45.7
PSO832G4111 Papaver somniferum HOM05D003710 ORTHO05D005250 2.2e-15 85.9 100 47.0
CAN.G1679.1 Capsicum annuum HOM05D003710 ORTHO05D005250 2.9e-15 85.5 103 43.7
CAN.G424.19 Capsicum annuum HOM05D003710 ORTHO05D005250 2.9e-15 85.5 103 43.7
Glyma.08G059600 Glycine max HOM05D003710 ORTHO05D005250 2.9e-15 85.5 103 42.7
Lj1P1213T32 Lonicera japonica HOM05D003710 ORTHO05D005250 2.9e-15 85.5 106 46.2
MBI02_g47448_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 2.9e-15 85.5 105 43.8
Nn1g06778 Nelumbo nucifera HOM05D003710 ORTHO05D005250 2.9e-15 85.5 102 47.1
Oeu038209.1 Olea europaea HOM05D003710 ORTHO05D005250 2.9e-15 85.5 105 45.7
PGSC0003DMG400022403 Solanum tuberosum HOM05D003710 ORTHO05D005250 2.9e-15 85.5 103 43.7
ClCG03G005500 Citrullus lanatus HOM05D003710 ORTHO05D005250 3.8e-15 85.1 103 45.6
Eucgr.D00719 Eucalyptus grandis HOM05D003710 ORTHO05D005250 3.8e-15 85.1 103 44.7
Nitab4.5_0008791g0010 Nicotiana tabacum HOM05D003710 ORTHO05D005250 5.0e-15 84.7 103 42.7
PSO210G5044 Papaver somniferum HOM05D003710 ORTHO05D005250 5.0e-15 84.7 100 46.0
Nitab4.5_0000190g0040 Nicotiana tabacum HOM05D003710 ORTHO05D005250 6.5e-15 84.3 103 42.7
Actinidia24057 Actinidia chinensis HOM05D003710 ORTHO05D005250 1.1e-14 83.6 103 46.6
MD05G1326000 Malus domestica HOM05D003710 ORTHO05D005250 1.4e-14 83.2 98 42.9
Solyc02g079200.1 Solanum lycopersicum HOM05D003710 ORTHO05D005250 2.5e-14 82.4 103 42.7
Sopen02g024000 Solanum pennellii HOM05D003710 ORTHO05D005250 2.5e-14 82.4 103 42.7
CsaV3_1G011760 Cucumis sativus L. HOM05D003710 ORTHO05D005250 3.2e-14 82.0 103 42.7
MSTRG.13179 Avicennia marina HOM05D003710 ORTHO05D005250 5.5e-14 81.3 103 37.9
CiPaw.09G157600 Carya illinoinensis HOM05D003710 ORTHO05D005250 5.5e-14 81.3 103 43.7
Cc02_g12370 Coffea canephora HOM05D003710 ORTHO05D005250 5.5e-14 81.3 102 44.1
PGR004G0177 Punica granatum HOM05D003710 ORTHO05D005250 7.2e-14 80.9 105 39.0
TAR624G0426 Trochodendron aralioides HOM05D003710 ORTHO05D005250 7.2e-14 80.9 105 43.8
TAR626G0587 Trochodendron aralioides HOM05D003710 ORTHO05D005250 7.2e-14 80.9 103 43.7
Prupe.4G037700 Prunus persica HOM05D003710 ORTHO05D005250 1.6e-13 79.7 105 41.0
TAR627G0563 Trochodendron aralioides HOM05D003710 ORTHO05D005250 1.6e-13 79.7 98 43.9
ECA248G2720 Erigeron canadensis HOM05D003710 ORTHO05D005250 2.1e-13 79.3 105 41.0
Gohir.A06G123400 Gossypium hirsutum HOM05D003710 ORTHO05D005250 2.1e-13 79.3 103 43.7
Gohir.D06G128300 Gossypium hirsutum HOM05D003710 ORTHO05D005250 2.1e-13 79.3 106 44.3
Gorai.010G149900 Gossypium raimondii HOM05D003710 ORTHO05D005250 2.1e-13 79.3 106 44.3
Oeu036687.1 Olea europaea HOM05D003710 ORTHO05D005250 2.7e-13 79.0 96 44.8
MBI18_g07611_MAGBIO Magnolia biondii HOM05D003710 ORTHO05D005250 3.6e-13 78.6 103 38.8
Peaxi162Scf00619g00092 Petunia axillaris HOM05D003710 ORTHO05D005250 6.1e-13 77.8 102 41.2
FAN21G1071 Fragaria x ananassa HOM05D003710 ORTHO05D005250 7.9e-13 77.4 103 41.7
arahy.Tifrunner.gnm1.ann1.FW8YYF Arachis hypogaea HOM05D003710 ORTHO05D005250 1.0e-12 77.0 104 39.4
SGA_v2.0_scaffold159G37691 Striga asiatica HOM05D003710 ORTHO05D005250 1.0e-12 77.0 106 35.8
FvH4_3g03930 Fragaria vesca HOM05D003710 ORTHO05D005250 1.4e-12 76.6 103 41.7
FAN11G0401 Fragaria x ananassa HOM05D003710 ORTHO05D005250 1.8e-12 76.3 103 41.7
FAN16G2996 Fragaria x ananassa HOM05D003710 ORTHO05D005250 1.8e-12 76.3 103 41.7
FAN25G1364 Fragaria x ananassa HOM05D003710 ORTHO05D005250 1.8e-12 76.3 103 41.7
arahy.Tifrunner.gnm1.ann1.LGD9DB Arachis hypogaea HOM05D003710 ORTHO05D005250 3.0e-12 75.5 104 38.5
DCAR_004141 Daucus carota HOM05D003710 ORTHO05D005250 5.1e-12 74.7 103 39.8
RcHm_v2.0_Chr5g0006221 Rosa chinensis HOM05D003710 ORTHO05D005250 5.1e-12 74.7 103 42.7
CiPaw.10G118800 Carya illinoinensis HOM05D003710 ORTHO05D005250 8.8e-12 73.9 105 39.0
Migut.H01519 Erythranthe guttata HOM05D003710 ORTHO05D005250 8.8e-12 73.9 105 33.3
Lalb_Chr16g0383391 Lupinus albus HOM05D003710 ORTHO05D005250 8.8e-12 73.9 80 47.5
Migut.H01147 Erythranthe guttata HOM05D003710 ORTHO05D005250 1.1e-11 73.6 105 33.3
MSTRG.14675 Avicennia marina HOM05D003710 ORTHO05D005250 2.0e-11 72.8 103 35.9
Hma1.2p1_1182F.1_g264790 Hydrangea macrophylla HOM05D003710 ORTHO05D005250 2.5e-11 72.4 105 40.0
Ah.02g119910 Amaranthus hybridus HOM05D003710 ORTHO05D005250 5.7e-11 71.2 103 37.9
EL10Ac8g20535 Beta vulgaris HOM05D003710 ORTHO05D005250 5.7e-11 71.2 95 41.1
CSS0004306 Camellia sinensis var. sinensis HOM05D003710 ORTHO05D005250 5.7e-11 71.2 105 40.0
ECA234G2608 Erigeron canadensis HOM05D003710 ORTHO05D005250 5.7e-11 71.2 95 42.1
Ah.14g088900 Amaranthus hybridus HOM05D003710 ORTHO05D005250 7.4e-11 70.9 103 35.9
Ah.09g236190 Amaranthus hybridus HOM05D003710 ORTHO05D005250 9.7e-11 70.5 103 36.9
Aqoxy1G03894 Aquilegia oxysepala HOM05D003710 ORTHO05D005250 1.7e-10 69.7 95 43.2
AUR62012482 Chenopodium quinoa HOM05D003710 ORTHO05D005250 1.7e-10 69.7 103 34.0
Lsat_1_v5_gn_4_56781 Lactuca sativa HOM05D003710 ORTHO05D005250 1.7e-10 69.7 95 42.1
SalBow7G1351 Salvia bowleyana HOM05D003710 ORTHO05D005250 1.7e-10 69.7 108 36.1
SalBow7G2176 Salvia bowleyana HOM05D003710 ORTHO05D005250 1.7e-10 69.7 108 36.1
AUR62014713 Chenopodium quinoa HOM05D003710 ORTHO05D005250 2.2e-10 69.3 103 33.0
Os07g0560300 Oryza sativa ssp. japonica HOM05D003710 ORTHO05D005250 8.2e-10 67.4 107 36.4
Rhsim02G0119400 Rhododendron simsii HOM05D003710 ORTHO05D005250 1.1e-09 67.0 105 38.1
Oeu014712.1 Olea europaea HOM05D003710 ORTHO05D005250 1.4e-09 66.6 105 35.2
unitig_26.g9375 Utricularia gibba HOM05D003710 ORTHO05D005250 2.4e-09 65.9 95 37.9
Lsat_1_v5_gn_1_122121 Lactuca sativa HOM05D003710 ORTHO05D005250 6.9e-09 64.3 102 37.3
Actinidia05569 Actinidia chinensis HOM05D003710 ORTHO05D005250 1.2e-08 63.5 103 38.8
unitig_749.g13637 Utricularia gibba HOM05D003710 ORTHO05D005250 4.5e-08 61.6 95 33.7
CDE05G3638 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 5.9e-08 61.2 98 31.6
CDE02G4372 Ceratophyllum demersum HOM05D003710 ORTHO05D005250 1.1e-06 57.0 105 30.5
Zm00001eb324200 Zea mays HOM05D003710 ORTHO05D005250 2.5e-06 55.8 88 35.2
Eucgr.E03808 Eucalyptus grandis HOM05D003710 ORTHO05D005250 4.2e-06 55.1 103 33.0
Zm00001eb106840 Zea mays HOM05D003710 ORTHO05D005250 5.5e-06 54.7 90 36.7


User provided reference genes

Program Settings