Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p33050 Brassica napus HOM05D005739 ORTHO05D007740 1.2e-239 832.8 413 100.0
BcaC04g21334 Brassica carinata HOM05D005739 ORTHO05D007740 8.7e-179 630.6 317 99.7
BolC9t56140H Brassica oleracea HOM05D005739 ORTHO05D007740 1.9e-178 629.4 317 99.4
BraA09t38171Z Brassica rapa HOM05D005739 ORTHO05D007740 1.7e-174 616.3 317 97.2
A09p26050 Brassica napus HOM05D005739 ORTHO05D007740 3.5e-172 608.6 317 95.3
BcaB01g01842 Brassica carinata HOM05D005739 ORTHO05D007740 1.0e-163 580.5 317 91.2
Carub.0006s3279 Capsella rubella HOM05D005739 ORTHO05D007740 2.5e-162 575.9 318 87.4
Sp6g04100 Schrenkiella parvula HOM05D005739 ORTHO05D007740 3.3e-162 575.5 318 89.9
AT4G04880 Arabidopsis thaliana HOM05D005739 ORTHO05D007740 2.2e-161 572.8 318 88.1
AL6G48370 Arabidopsis lyrata HOM05D005739 ORTHO05D007740 2.4e-160 569.3 318 87.7
Thhalv10028765m.g Eutrema salsugineum HOM05D005739 ORTHO05D007740 2.6e-159 565.8 319 88.4
CARHR252690 Cardamine hirsuta HOM05D005739 ORTHO05D007740 1.7e-158 563.1 317 87.7
Aa31LG9G9620 Aethionema arabicum HOM05D005739 ORTHO05D007740 1.2e-148 530.4 315 83.5
Cfa000251 Carpinus fangiana HOM05D005739 ORTHO05D007740 4.1e-136 488.8 327 72.8
Haze_06773 Corylus avellana HOM05D005739 ORTHO05D007740 9.1e-136 487.6 325 72.9
Atru.chr10.2176 Acer truncatum HOM05D005739 ORTHO05D007740 3.5e-135 485.7 323 74.6
QL05p074082 Quercus lobata HOM05D005739 ORTHO05D007740 1.3e-134 483.8 324 72.2
Potri.011G000100 Populus trichocarpa HOM05D005739 ORTHO05D007740 1.5e-133 480.3 324 72.8
CsaV3_6G049150 Cucumis sativus L. HOM05D005739 ORTHO05D007740 4.2e-133 478.8 324 72.5
Ciclev10015698m.g Citrus clementina HOM05D005739 ORTHO05D007740 1.6e-132 476.9 324 71.0
COL.COLO4_31742 Corchorus olitorius HOM05D005739 ORTHO05D007740 1.6e-132 476.9 317 73.2
Sed0020639 Sechium edule HOM05D005739 ORTHO05D007740 2.1e-132 476.5 324 72.5
Gohir.D06G153000 Gossypium hirsutum HOM05D005739 ORTHO05D007740 2.7e-132 476.1 320 72.2
Hma1.2p1_0813F.1_g222580 Hydrangea macrophylla HOM05D005739 ORTHO05D007740 2.7e-132 476.1 331 71.0
Actinidia11847 Actinidia chinensis HOM05D005739 ORTHO05D007740 3.6e-132 475.7 333 70.3
Gorai.010G179000 Gossypium raimondii HOM05D005739 ORTHO05D007740 3.6e-132 475.7 320 72.2
GSVIVG01012654001 Vitis vinifera HOM05D005739 ORTHO05D007740 3.6e-132 475.7 325 73.5
Sabra11G0000600 Salix brachista HOM05D005739 ORTHO05D007740 6.1e-132 474.9 324 72.5
MELO3C007380.2 Cucumis melo HOM05D005739 ORTHO05D007740 1.4e-131 473.8 324 71.9
Dinv13869 Davidia involucrata HOM05D005739 ORTHO05D007740 6.8e-131 471.5 324 71.9
Thecc.06G217300 Theobroma cacao HOM05D005739 ORTHO05D007740 8.8e-131 471.1 320 71.2
Eucgr.D01304 Eucalyptus grandis HOM05D005739 ORTHO05D007740 1.2e-130 470.7 332 69.0
MD10G1317700 Malus domestica HOM05D005739 ORTHO05D007740 1.5e-130 470.3 323 70.3
RcHm_v2.0_Chr5g0003721 Rosa chinensis HOM05D005739 ORTHO05D007740 1.5e-130 470.3 323 70.3
Duzib235G0413 Durio zibethinus HOM05D005739 ORTHO05D007740 2.6e-130 469.5 320 71.2
TWI38G1065 Tripterygium wilfordii HOM05D005739 ORTHO05D007740 7.5e-130 468.0 322 73.3
Nn1g03584 Nelumbo nucifera HOM05D005739 ORTHO05D007740 2.8e-129 466.1 333 69.1
arahy.Tifrunner.gnm1.ann1.GPHX1M Arachis hypogaea HOM05D005739 ORTHO05D007740 4.9e-129 465.3 326 69.6
arahy.Tifrunner.gnm1.ann1.HAY2RB Arachis hypogaea HOM05D005739 ORTHO05D007740 1.1e-128 464.2 326 70.6
Lsat_1_v5_gn_4_60101 Lactuca sativa HOM05D005739 ORTHO05D007740 1.1e-128 464.2 317 71.3
CSS0045804 Camellia sinensis var. sinensis HOM05D005739 ORTHO05D007740 7.0e-128 461.5 328 69.2
MSTRG.15974 Avicennia marina HOM05D005739 ORTHO05D007740 3.5e-127 459.1 323 69.0
Glyma.07G258900 Glycine max HOM05D005739 ORTHO05D007740 7.7e-127 458.0 326 68.4
VMungo1215G0361 Vigna mungo HOM05D005739 ORTHO05D007740 1.0e-126 457.6 326 68.7
Psat4g007680 Pisum sativum HOM05D005739 ORTHO05D007740 1.7e-126 456.8 327 67.9
DCAR_008137 Daucus carota HOM05D005739 ORTHO05D007740 2.3e-126 456.4 322 68.0
Lj6g0027190 Lotus japonicus HOM05D005739 ORTHO05D007740 2.3e-126 456.4 327 68.8
Ca_21095_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 2.9e-126 456.1 328 68.0
Ca_30203_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 2.9e-126 456.1 328 68.0
FvH4_3g02490 Fragaria vesca HOM05D005739 ORTHO05D007740 3.8e-126 455.7 323 67.8
Phvul.003G077000 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 5.0e-126 455.3 326 67.8
PGR004G1404 Punica granatum HOM05D005739 ORTHO05D007740 5.0e-126 455.3 330 67.9
Sed0022137 Sechium edule HOM05D005739 ORTHO05D007740 6.6e-126 454.9 326 69.3
Glyma.13G206500 Glycine max HOM05D005739 ORTHO05D007740 1.1e-125 454.1 321 68.8
EL10Ac8g20019 Beta vulgaris HOM05D005739 ORTHO05D007740 1.9e-125 453.4 325 67.7
VMungo0540G2038 Vigna mungo HOM05D005739 ORTHO05D007740 1.9e-125 453.4 320 70.0
SalBow8G1417 Salvia bowleyana HOM05D005739 ORTHO05D007740 2.5e-125 453.0 323 68.4
THA.LOC104812968 Tarenaya hassleriana HOM05D005739 ORTHO05D007740 4.3e-125 452.2 300 74.0
ClCG01G022090 Citrullus lanatus HOM05D005739 ORTHO05D007740 7.3e-125 451.4 324 70.1
Cc09_g01940 Coffea canephora HOM05D005739 ORTHO05D007740 9.5e-125 451.1 317 69.4
TAR627G1089 Trochodendron aralioides HOM05D005739 ORTHO05D007740 9.5e-125 451.1 323 69.7
Glyma.15G106200 Glycine max HOM05D005739 ORTHO05D007740 1.2e-124 450.7 321 69.2
PGSC0003DMG400011257 Solanum tuberosum HOM05D005739 ORTHO05D007740 1.2e-124 450.7 327 67.3
HanXRQChr16g0515931 Helianthus annuus HOM05D005739 ORTHO05D007740 1.6e-124 450.3 319 69.3
FAN25G0806 Fragaria x ananassa HOM05D005739 ORTHO05D007740 2.1e-124 449.9 319 67.1
Migut.M01296 Erythranthe guttata HOM05D005739 ORTHO05D007740 3.6e-124 449.1 324 68.2
Peaxi162Scf00203g01110 Petunia axillaris HOM05D005739 ORTHO05D007740 3.6e-124 449.1 321 67.6
Nitab4.5_0007448g0040 Nicotiana tabacum HOM05D005739 ORTHO05D007740 4.7e-124 448.7 327 67.0
TPR.G37091 Trifolium pratense HOM05D005739 ORTHO05D007740 1.0e-123 447.6 326 66.9
PSO210G3635 Papaver somniferum HOM05D005739 ORTHO05D007740 1.8e-123 446.8 327 67.3
Solyc10g005310.3 Solanum lycopersicum HOM05D005739 ORTHO05D007740 1.8e-123 446.8 327 67.0
vmacro15817 Vaccinium macrocarpon HOM05D005739 ORTHO05D007740 1.8e-123 446.8 345 66.4
Rhsim02G0110500 Rhododendron simsii HOM05D005739 ORTHO05D007740 5.2e-123 445.3 344 66.3
PSO832G4144 Papaver somniferum HOM05D005739 ORTHO05D007740 1.2e-122 444.1 327 67.0
Oeu063902.1 Olea europaea HOM05D005739 ORTHO05D007740 2.6e-122 443.0 318 69.2
Phvul.006G151100 Phaseolus vulgaris HOM05D005739 ORTHO05D007740 9.8e-122 441.0 320 67.8
Cpa.g.sc198.24 Carica papaya HOM05D005739 ORTHO05D007740 1.3e-121 440.7 300 73.0
ECA234G0122 Erigeron canadensis HOM05D005739 ORTHO05D007740 1.7e-121 440.3 318 68.9
Lalb_Chr20g0118561 Lupinus albus HOM05D005739 ORTHO05D007740 2.9e-121 439.5 335 66.3
Gohir.A06G147200 Gossypium hirsutum HOM05D005739 ORTHO05D007740 4.1e-120 435.6 295 72.9
CDE11G0579 Ceratophyllum demersum HOM05D005739 ORTHO05D007740 3.5e-119 432.6 316 68.0
SGA_v2.0_scaffold4G01929 Striga asiatica HOM05D005739 ORTHO05D007740 3.5e-119 432.6 338 66.6
TPR.G7643 Trifolium pratense HOM05D005739 ORTHO05D007740 1.0e-118 431.0 335 64.8
Ca_00625_v3 Cicer arietinum L. HOM05D005739 ORTHO05D007740 1.7e-118 430.3 337 65.6
Psat1g181440 Pisum sativum HOM05D005739 ORTHO05D007740 2.3e-118 429.9 320 65.6
Medtr2g022780 Medicago truncatula HOM05D005739 ORTHO05D007740 1.1e-117 427.6 319 66.1
Ah.14g088100 Amaranthus hybridus HOM05D005739 ORTHO05D007740 5.6e-117 425.2 365 59.7
Lj1C1227G9 Lonicera japonica HOM05D005739 ORTHO05D007740 7.3e-117 424.9 332 65.7
HPP92_016316 Vanilla planifolia HOM05D005739 ORTHO05D007740 1.2e-116 424.1 337 62.3
ATR0752G010 Amborella trichopoda HOM05D005739 ORTHO05D007740 8.9e-115 417.9 324 63.9
Zm00001eb110820 Zea mays HOM05D005739 ORTHO05D007740 8.9e-115 417.9 325 62.8
CiPaw.10G069300 Carya illinoinensis HOM05D005739 ORTHO05D007740 7.5e-114 414.8 287 71.4
CANSAT56G1696 Cannabis sativa HOM05D005739 ORTHO05D007740 1.9e-112 410.2 289 68.9
AUR62012674 Chenopodium quinoa HOM05D005739 ORTHO05D007740 2.7e-111 406.4 324 63.3
Os07g0661000 Oryza sativa ssp. japonica HOM05D005739 ORTHO05D007740 4.6e-111 405.6 333 59.2
SEGI_12484 Sequoiadendron giganteum HOM05D005739 ORTHO05D007740 2.3e-110 403.3 331 60.1
Manes.16G010200 Manihot esculenta HOM05D005739 ORTHO05D007740 8.6e-110 401.4 278 70.5
Medtr4g131840 Medicago truncatula HOM05D005739 ORTHO05D007740 7.3e-109 398.3 302 64.9
Dinv17816 Davidia involucrata HOM05D005739 ORTHO05D007740 8.1e-108 394.8 274 72.3
Sc06g0010750 Simmondsia chinensis HOM05D005739 ORTHO05D007740 4.0e-107 392.5 288 68.4
Nitab4.5_0002155g0060 Nicotiana tabacum HOM05D005739 ORTHO05D007740 8.9e-107 391.3 367 56.1
Prupe.4G024100 Prunus persica HOM05D005739 ORTHO05D007740 3.7e-105 386.0 276 69.2
AUR62021982 Chenopodium quinoa HOM05D005739 ORTHO05D007740 2.4e-104 383.3 386 53.6
MBI18_g35070_MAGBIO Magnolia biondii HOM05D005739 ORTHO05D007740 8.6e-102 374.8 279 65.9
Dinv20033 Davidia involucrata HOM05D005739 ORTHO05D007740 1.5e-101 374.0 305 64.6
SMO343G0036 Selaginella moellendorffii HOM05D005739 ORTHO05D007740 2.4e-96 356.7 315 58.1
unitig_92.g28118 Utricularia gibba HOM05D005739 ORTHO05D007740 2.3e-94 350.1 278 62.6
HPP92_016297 Vanilla planifolia HOM05D005739 ORTHO05D007740 3.0e-94 349.7 337 54.9
Aqoxy1G03635 Aquilegia oxysepala HOM05D005739 ORTHO05D007740 2.8e-92 343.2 261 66.7
Hund23487 Selenicereus undatus HOM05D005739 ORTHO05D007740 6.2e-92 342.0 329 57.8
Mapoly0023s0135 Marchantia polymorpha HOM05D005739 ORTHO05D007740 5.2e-91 339.0 333 52.9
Sopen10g001300 Solanum pennellii HOM05D005739 ORTHO05D007740 4.3e-77 292.7 221 64.3
AagrBONN_evm.TU.Sc2ySwM_368.535 Anthoceros agrestis HOM05D005739 ORTHO05D007740 2.8e-76 290.0 316 48.4
CAN.G105.13 Capsicum annuum HOM05D005739 ORTHO05D007740 8.1e-76 288.5 228 62.3
Pp3c11_7970 Physcomitrium patens HOM05D005739 ORTHO05D007740 1.6e-71 274.2 262 51.9
Cre03.g161000 Chlamydomonas reinhardtii HOM05D005739 ORTHO05D007740 1.3e-65 254.6 414 37.7
arahy.Tifrunner.gnm1.ann1.H0U1UD Arachis hypogaea HOM05D005739 ORTHO05D007740 1.1e-59 235.0 286 49.0
MCO11G903 Micromonas commoda HOM05D005739 ORTHO05D007740 2.6e-58 230.3 336 42.3
arahy.Tifrunner.gnm1.ann1.53BRPK Arachis hypogaea HOM05D005739 ORTHO05D007740 3.6e-55 219.9 175 65.7
arahy.Tifrunner.gnm1.ann1.FSQL8E Arachis hypogaea HOM05D005739 ORTHO05D007740 3.6e-55 219.9 271 49.1
arahy.Tifrunner.gnm1.ann1.KZ0328 Arachis hypogaea HOM05D005739 ORTHO05D007740 5.3e-51 206.1 240 51.2
arahy.Tifrunner.gnm1.ann1.Q9UH73 Arachis hypogaea HOM05D005739 ORTHO05D007740 5.9e-50 202.6 263 44.5
arahy.Tifrunner.gnm1.ann1.7V36PE Arachis hypogaea HOM05D005739 ORTHO05D007740 1.2e-47 194.9 210 54.3
arahy.Tifrunner.gnm1.ann1.0E5R4V Arachis hypogaea HOM05D005739 ORTHO05D007740 7.9e-47 192.2 180 60.0
arahy.Tifrunner.gnm1.ann1.B9PES8 Arachis hypogaea HOM05D005739 ORTHO05D007740 2.3e-46 190.7 180 59.4
arahy.Tifrunner.gnm1.ann1.AD56MI Arachis hypogaea HOM05D005739 ORTHO05D083983 5.9e-42 176.0 244 46.3
BcaC04g21333 Brassica carinata HOM05D022475 ORTHO05D090490 3.6e-31 140.2 105 72.4
CANSAT64G1767 Cannabis sativa HOM05D005739 ORTHO05D033954 1.3e-20 105.1 74 63.5
arahy.Tifrunner.gnm1.ann1.39644B Arachis hypogaea HOM05D005739 ORTHO05D007740 4.8e-20 103.2 197 38.1
arahy.Tifrunner.gnm1.ann1.3ZZ8UM Arachis hypogaea HOM05D000187 ORTHO05D000230 7.5e-13 79.3 170 36.5
CANSAT56G0563 Cannabis sativa HOM05D005739 ORTHO05D113818 6.3e-12 76.3 68 55.9
arahy.Tifrunner.gnm1.ann1.ZUJ3H1 Arachis hypogaea HOM05D005739 ORTHO05D083715 8.6e-09 65.9 64 59.4
BcaB02g08085 Brassica carinata HOM05D022475 ORTHO05D094976 1.9e-08 64.7 89 44.9
SEGI_28449 Sequoiadendron giganteum HOM05D005739 ORTHO05D033954 4.3e-08 63.5 45 64.4
BcaB08g35571 Brassica carinata HOM05D022475 ORTHO05D095632 1.6e-07 61.6 87 43.7


User provided reference genes

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