Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 1.4e-198 696.0 336 100.0
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 1.4e-198 696.0 336 100.0
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 3.7e-196 688.0 336 98.8
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 9.2e-195 683.3 336 97.9
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 9.2e-195 683.3 336 97.9
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 2.0e-181 639.0 339 92.0
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 3.4e-181 638.3 335 90.7
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 3.4e-181 638.3 335 90.7
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.5e-176 622.9 330 89.4
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.5e-176 622.9 339 87.6
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 2.5e-176 622.1 329 89.7
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.7e-170 602.1 332 85.2
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 3.0e-169 598.6 326 84.4
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 6.2e-167 590.9 332 84.6
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.2e-164 582.4 326 84.4
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 2.2e-164 582.4 324 83.6
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 1.1e-163 580.1 326 84.0
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-163 580.1 326 84.0
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.9e-163 579.3 326 83.7
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.9e-163 579.3 329 83.6
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 3.2e-163 578.6 327 83.2
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 4.2e-163 578.2 333 81.4
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 4.2e-163 578.2 326 83.4
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 7.1e-163 577.4 323 83.6
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.2e-162 576.6 327 82.9
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.6e-162 576.2 326 83.4
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.6e-162 576.2 333 81.1
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.3e-161 573.2 327 83.2
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 3.0e-161 572.0 329 81.5
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 3.0e-161 572.0 333 80.8
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 3.9e-161 571.6 314 84.1
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 3.9e-161 571.6 321 82.9
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 5.1e-161 571.2 323 83.0
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.1e-160 570.1 316 84.5
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.1e-160 570.1 324 82.4
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 1.1e-160 570.1 322 82.9
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.5e-160 569.7 320 83.4
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 9.6e-160 567.0 327 80.4
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.6e-159 566.2 333 80.5
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.6e-159 566.2 329 80.2
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.6e-159 566.2 325 80.0
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.1e-159 565.8 327 79.8
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.8e-159 565.5 337 79.2
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.7e-159 565.1 326 81.0
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 3.7e-159 565.1 326 81.6
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 4.8e-159 564.7 326 80.4
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.2e-159 564.3 337 80.4
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 8.2e-159 563.9 314 82.8
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.1e-158 563.5 324 81.5
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 1.8e-158 562.8 320 82.2
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 2.4e-158 562.4 321 81.3
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.1e-158 562.0 321 81.9
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 4.0e-158 561.6 320 81.6
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.9e-158 560.8 332 79.8
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.2e-157 560.1 324 81.2
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.5e-157 559.7 327 81.0
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.6e-157 558.9 327 81.0
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 3.4e-157 558.5 316 80.1
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 3.4e-157 558.5 316 80.1
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.5e-157 558.1 316 81.6
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 4.5e-157 558.1 323 78.9
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 5.8e-157 557.8 338 76.3
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.0e-156 557.0 327 81.0
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 1.7e-156 556.2 327 80.4
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 2.9e-156 555.4 330 78.8
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 3.8e-156 555.1 327 80.4
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.9e-156 554.7 318 82.1
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 4.9e-156 554.7 331 77.3
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 6.5e-156 554.3 317 81.4
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 1.1e-155 553.5 336 78.6
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.9e-155 552.7 321 78.5
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 1.9e-155 552.7 317 81.7
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 2.5e-155 552.4 324 79.3
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 2.5e-155 552.4 318 80.8
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 3.2e-155 552.0 315 81.6
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 4.2e-155 551.6 336 78.0
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.2e-154 550.1 324 79.3
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.2e-154 550.1 299 84.9
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.7e-154 548.9 317 81.7
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 3.5e-154 548.5 324 79.0
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 4.6e-154 548.1 327 79.8
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 4.6e-154 548.1 336 78.0
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.0e-153 547.0 310 80.3
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 1.3e-153 546.6 311 81.4
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 6.7e-153 544.3 332 78.0
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 6.7e-153 544.3 325 79.1
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 6.7e-153 544.3 322 78.6
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 6.7e-153 544.3 315 80.6
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.5e-152 543.1 329 78.1
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.9e-152 542.7 321 77.9
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.3e-151 540.0 328 78.4
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.3e-151 540.0 328 78.4
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.6e-151 539.7 310 80.6
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 2.8e-151 538.9 314 79.0
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.8e-150 536.2 327 78.9
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 4.1e-150 535.0 382 68.8
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 5.3e-150 534.6 320 78.4
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 7.7e-149 530.8 312 78.2
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 6.5e-148 527.7 352 70.5
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 1.1e-147 526.9 322 74.5
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 3.2e-147 525.4 329 75.4
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 9.4e-147 523.9 324 75.6
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 4.6e-146 521.5 331 74.6
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.4e-145 520.0 331 74.3
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 2.2e-143 512.7 305 78.4
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 6.3e-143 511.1 312 76.3
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.2e-140 502.7 318 71.7
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 5.5e-139 498.0 277 81.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.7e-135 485.3 303 72.9
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 7.0e-134 481.1 280 80.4
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.9e-132 475.7 317 72.9
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 4.2e-131 471.9 329 67.2
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 8.0e-130 467.6 310 68.4
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 3.0e-129 465.7 276 79.7
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 1.1e-128 463.8 333 68.2
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 3.8e-124 448.7 308 65.3
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.2e-123 445.7 346 59.8
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.2e-123 445.7 346 59.8
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 2.1e-122 443.0 251 80.9
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.4e-121 440.3 305 64.6
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 6.3e-111 404.8 315 56.8
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.8e-105 386.7 235 78.3
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 1.9e-99 366.7 318 54.7
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.7e-95 352.4 246 67.1
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 2.8e-90 336.3 215 71.6
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 1.1e-86 324.3 315 49.5
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.9e-79 298.9 351 43.3
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 9.6e-67 258.1 360 38.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.1e-51 208.0 123 75.6
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.8e-31 139.8 82 78.0
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 5.5e-30 136.0 89 74.2
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 2.5e-22 110.5 68 80.9
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.1e-21 107.5 84 66.7
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.7e-15 87.8 45 84.4
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.9e-14 84.3 49 73.5
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.9e-14 84.3 41 87.8
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 1.1e-11 75.1 52 67.3
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 4.1e-09 66.6 57 54.4


User provided reference genes

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