Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21361 Brassica carinata HOM05D012894 ORTHO05D014766 1.1e-138 496.9 292 100.0
C09p32720 Brassica napus HOM05D012894 ORTHO05D014766 1.1e-138 496.9 292 100.0
A09p25830 Brassica napus HOM05D012894 ORTHO05D014766 5.5e-111 404.8 297 84.2
BolC9t56115H Brassica oleracea HOM05D012894 ORTHO05D014766 3.6e-110 402.1 297 83.8
BraA09t38153Z Brassica rapa HOM05D012894 ORTHO05D014766 3.9e-109 398.7 297 84.2
BcaB01g01861 Brassica carinata HOM05D012894 ORTHO05D014766 1.1e-100 370.5 301 78.7
Sp6g03950 Schrenkiella parvula HOM05D012894 ORTHO05D014766 2.0e-92 343.2 293 69.6
Thhalv10028855m.g Eutrema salsugineum HOM05D012894 ORTHO05D014766 5.0e-88 328.6 298 69.8
AT4G04990 Arabidopsis thaliana HOM05D012894 ORTHO05D014766 4.5e-81 305.4 313 66.8
AL6G48570 Arabidopsis lyrata HOM05D012894 ORTHO05D014766 1.0e-77 294.3 319 64.3
Carub.0006s3295 Capsella rubella HOM05D012894 ORTHO05D014766 1.1e-58 231.1 381 45.4
Aa31LG9G9450 Aethionema arabicum HOM05D012894 ORTHO05D014766 5.8e-36 155.6 301 40.2
THA.LOC104812765 Tarenaya hassleriana HOM05D012894 ORTHO05D014766 3.7e-22 109.8 305 39.7
Sp2g03200 Schrenkiella parvula HOM05D001640 ORTHO05D001612 1.5e-07 61.2 41 70.7
HanXRQChr04g0125161 Helianthus annuus HOM05D001640 ORTHO05D001612 3.3e-07 60.1 52 61.5
Manes.15G083300 Manihot esculenta HOM05D001640 ORTHO05D001612 3.3e-07 60.1 112 37.5
Potri.011G044000 Populus trichocarpa HOM05D001640 ORTHO05D001612 3.3e-07 60.1 44 65.9
Manes.03G116400 Manihot esculenta HOM05D001640 ORTHO05D001612 7.4e-07 58.9 56 55.4
VMungo0540G1672 Vigna mungo HOM05D001640 ORTHO05D001612 7.4e-07 58.9 106 40.6
BcaB01g04291 Brassica carinata HOM05D001640 ORTHO05D001612 9.7e-07 58.5 45 62.2
C01p38220 Brassica napus HOM05D001640 ORTHO05D001612 9.7e-07 58.5 109 38.5
BolC1t03784H Brassica oleracea HOM05D001640 ORTHO05D001612 9.7e-07 58.5 109 38.5
Gohir.A01G068400 Gossypium hirsutum HOM05D001640 ORTHO05D001612 9.7e-07 58.5 72 52.8
Aqoxy1G02755 Aquilegia oxysepala HOM05D001640 ORTHO05D001612 1.3e-06 58.2 44 63.6
BcaB07g31271 Brassica carinata HOM05D001640 ORTHO05D001612 1.6e-06 57.8 41 63.4
Duzib213G0072 Durio zibethinus HOM05D001640 ORTHO05D001612 1.6e-06 57.8 64 54.7
Lj3g0003756 Lotus japonicus HOM05D001640 ORTHO05D001612 1.6e-06 57.8 43 67.4
Lsat_1_v5_gn_4_57221 Lactuca sativa HOM05D001640 ORTHO05D001612 2.8e-06 57.0 40 67.5
A01p30130 Brassica napus HOM05D001640 ORTHO05D001612 3.7e-06 56.6 109 36.7
Thecc.07G071500 Theobroma cacao HOM05D001640 ORTHO05D001612 3.7e-06 56.6 61 54.1
Atru.chr2.2821 Acer truncatum HOM05D001640 ORTHO05D001612 4.8e-06 56.2 45 62.2
MSTRG.7298 Avicennia marina HOM05D001640 ORTHO05D001612 4.8e-06 56.2 56 53.6
CSS0030521 Camellia sinensis var. sinensis HOM05D001640 ORTHO05D001612 4.8e-06 56.2 118 36.4
CsaV3_3G005980 Cucumis sativus L. HOM05D001640 ORTHO05D001612 4.8e-06 56.2 41 63.4
Lsat_1_v5_gn_1_124741 Lactuca sativa HOM05D001640 ORTHO05D001612 4.8e-06 56.2 60 51.7
MBI02_g35911_MAGBIO Magnolia biondii HOM05D001640 ORTHO05D001612 4.8e-06 56.2 114 38.6
Thecc.06G197500 Theobroma cacao HOM05D001640 ORTHO05D001612 4.8e-06 56.2 184 30.4
BraA01t03146Z Brassica rapa HOM05D001640 ORTHO05D001612 6.3e-06 55.8 108 37.0
ClCG10G006530 Citrullus lanatus HOM05D001640 ORTHO05D001612 6.3e-06 55.8 89 43.8
Lsat_1_v5_gn_7_19801 Lactuca sativa HOM05D001640 ORTHO05D001612 6.3e-06 55.8 49 59.2
Nn7g36083 Nelumbo nucifera HOM05D001640 ORTHO05D001612 6.3e-06 55.8 114 34.2
Nitab4.5_0000297g0100 Nicotiana tabacum HOM05D001640 ORTHO05D001612 6.3e-06 55.8 43 60.5
CiPaw.11G176400 Carya illinoinensis HOM05D001640 ORTHO05D001612 8.2e-06 55.5 147 32.7
Oeu019363.1 Olea europaea HOM05D001640 ORTHO05D001612 8.2e-06 55.5 57 56.1
TWI39G0097 Tripterygium wilfordii HOM05D001640 ORTHO05D001612 8.2e-06 55.5 53 54.7


User provided reference genes

Program Settings