Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p32310 Brassica napus HOM05D000108 ORTHO05D011597 3.4e-46 188.0 93 100.0
A07p08640 Brassica napus HOM05D000108 ORTHO05D011597 4.1e-44 181.0 93 96.8
A07p11270 Brassica napus HOM05D000108 ORTHO05D011597 4.1e-44 181.0 93 96.8
BraA09t38068Z Brassica rapa HOM05D000108 ORTHO05D011597 4.1e-44 181.0 93 96.8
BraA07t28653Z Brassica rapa HOM05D000108 ORTHO05D011597 2.0e-43 178.7 93 95.7
C01p46310 Brassica napus HOM05D000108 ORTHO05D011597 1.7e-42 175.6 93 93.5
BolC1t04593H Brassica oleracea HOM05D000108 ORTHO05D011597 1.7e-42 175.6 93 93.5
BolC1t04594H Brassica oleracea HOM05D000108 ORTHO05D011597 1.7e-42 175.6 93 93.5
C01p46760 Brassica napus HOM05D000108 ORTHO05D011597 3.3e-41 171.4 99 88.9
BolC1t04648H Brassica oleracea HOM05D000108 ORTHO05D011597 3.3e-41 171.4 99 88.9
CARHR154150 Cardamine hirsuta HOM05D000108 ORTHO05D001149 3.4e-30 134.8 117 65.8
A01p26440 Brassica napus HOM05D000108 ORTHO05D001149 7.5e-30 133.7 116 65.5
BraA01t02568Z Brassica rapa HOM05D000108 ORTHO05D001149 7.5e-30 133.7 116 65.5
Carub.0005s1169 Capsella rubella HOM05D000108 ORTHO05D001149 2.2e-29 132.1 118 63.6
AL5G24530 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 2.9e-29 131.7 118 64.4
BolC1t03310H Brassica oleracea HOM05D000108 ORTHO05D001149 4.9e-29 131.0 116 63.8
BcaB05g23477 Brassica carinata HOM05D000108 ORTHO05D001149 1.1e-28 129.8 121 63.6
AT3G45850 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 5.4e-28 127.5 120 60.8
Thhalv10002384m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 7.1e-28 127.1 117 62.4
BcaC09g49719 Brassica carinata HOM05D000108 ORTHO05D001149 9.2e-28 126.7 116 62.9
C01p33640 Brassica napus HOM05D000108 ORTHO05D001149 9.2e-28 126.7 116 62.9
Sp5g15680 Schrenkiella parvula HOM05D000108 ORTHO05D001149 5.6e-25 117.5 120 59.2
C06p21290 Brassica napus HOM05D000108 ORTHO05D011597 1.4e-23 112.8 105 59.0
BcaB05g24316 Brassica carinata HOM05D000108 ORTHO05D011597 8.9e-23 110.2 59 84.7
BraA04t16829Z Brassica rapa HOM05D000108 ORTHO05D011597 1.3e-21 106.3 94 66.0
Aa31LG4G15070 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.7e-21 104.8 119 53.8
BcaC08g43639 Brassica carinata HOM05D000108 ORTHO05D011597 2.1e-19 99.0 66 72.7
C06p10580 Brassica napus HOM05D000108 ORTHO05D011597 2.1e-19 99.0 66 72.7
A03p40640 Brassica napus HOM05D000108 ORTHO05D011597 1.7e-18 95.9 94 61.7
A01p41790 Brassica napus HOM05D000108 ORTHO05D011597 2.3e-18 95.5 66 69.7
BraA09t41241Z Brassica rapa HOM05D000108 ORTHO05D011597 2.3e-18 95.5 66 69.7
Duzib168G1926 Durio zibethinus HOM05D000108 ORTHO05D001149 2.3e-18 95.5 115 48.7
Prupe.6G088500 Prunus persica HOM05D000108 ORTHO05D001149 2.3e-18 95.5 116 49.1
MD03G1105800 Malus domestica HOM05D000108 ORTHO05D001149 1.1e-17 93.2 116 46.6
MD11G1118200 Malus domestica HOM05D000108 ORTHO05D001149 1.1e-17 93.2 116 46.6
COL.COLO4_18411 Corchorus olitorius HOM05D000108 ORTHO05D001149 1.9e-17 92.4 115 47.0
FAN25G2360 Fragaria x ananassa HOM05D000108 ORTHO05D001149 2.5e-17 92.0 113 47.8
FvH4_3g34440 Fragaria vesca HOM05D000108 ORTHO05D001149 4.3e-17 91.3 113 46.9
FAN16G0704 Fragaria x ananassa HOM05D000108 ORTHO05D001149 4.3e-17 91.3 113 46.9
FAN25G0698 Fragaria x ananassa HOM05D000108 ORTHO05D011597 4.3e-17 91.3 113 46.9
Phvul.011G070000 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 4.3e-17 91.3 110 49.1
Duzib150G0072 Durio zibethinus HOM05D000108 ORTHO05D001149 5.6e-17 90.9 115 46.1
FAN21G0560 Fragaria x ananassa HOM05D000108 ORTHO05D001149 5.6e-17 90.9 113 46.0
THA.LOC104799469 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 5.6e-17 90.9 115 51.3
Duzib170G0496 Durio zibethinus HOM05D000108 ORTHO05D001149 7.3e-17 90.5 114 47.4
FAN11G1183 Fragaria x ananassa HOM05D000108 ORTHO05D001149 7.3e-17 90.5 113 48.7
Lj3g0021793 Lotus japonicus HOM05D000108 ORTHO05D001149 7.3e-17 90.5 108 50.0
RcHm_v2.0_Chr5g0062081 Rosa chinensis HOM05D000108 ORTHO05D001149 9.6e-17 90.1 112 50.0
Cfa011412 Carpinus fangiana HOM05D000108 ORTHO05D001149 1.6e-16 89.4 115 47.0
TAR636G0183 Trochodendron aralioides HOM05D000108 ORTHO05D001149 1.6e-16 89.4 115 47.0
Haze_23988 Corylus avellana HOM05D000108 ORTHO05D001149 2.1e-16 89.0 115 47.0
Haze_23992 Corylus avellana HOM05D000108 ORTHO05D001149 2.1e-16 89.0 115 47.0
Potri.001G233700 Populus trichocarpa HOM05D000108 ORTHO05D001149 2.1e-16 89.0 115 46.1
Thecc.09G332700 Theobroma cacao HOM05D000108 ORTHO05D001149 2.1e-16 89.0 115 46.1
Sabra16G0140000 Salix brachista HOM05D000108 ORTHO05D001149 2.8e-16 88.6 115 44.3
Ciclev10027728m.g Citrus clementina HOM05D000108 ORTHO05D001149 4.7e-16 87.8 115 46.1
Nn2g12816 Nelumbo nucifera HOM05D000108 ORTHO05D001149 4.7e-16 87.8 116 48.3
SalBow3G2091 Salvia bowleyana HOM05D000108 ORTHO05D001149 4.7e-16 87.8 115 47.8
TWI79G1415 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 4.7e-16 87.8 112 48.2
CANSAT54G1698 Cannabis sativa HOM05D000108 ORTHO05D001149 6.2e-16 87.4 115 44.3
Manes.11G137400 Manihot esculenta HOM05D000108 ORTHO05D001149 6.2e-16 87.4 115 45.2
TWI31G0805 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 6.2e-16 87.4 112 48.2
A01p20150 Brassica napus HOM05D000108 ORTHO05D011597 8.1e-16 87.0 88 59.1
Cpa.g.sc139.8 Carica papaya HOM05D000108 ORTHO05D001149 8.1e-16 87.0 115 47.8
Gohir.A05G099500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 1.1e-15 86.7 115 45.2
Potri.009G026000 Populus trichocarpa HOM05D000108 ORTHO05D001149 1.1e-15 86.7 115 44.3
Oeu058513.1 Olea europaea HOM05D000108 ORTHO05D001149 1.4e-15 86.3 115 45.2
Glyma.12G074300 Glycine max HOM05D000108 ORTHO05D001149 1.8e-15 85.9 110 48.2
Actinidia37269 Actinidia chinensis HOM05D000108 ORTHO05D001149 2.4e-15 85.5 115 46.1
arahy.Tifrunner.gnm1.ann1.2070QL Arachis hypogaea HOM05D000108 ORTHO05D001149 2.4e-15 85.5 116 45.7
Atru.chr3.3778 Acer truncatum HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 44.3
arahy.Tifrunner.gnm1.ann1.7B48AK Arachis hypogaea HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 47.0
arahy.Tifrunner.gnm1.ann1.QN0DU3 Arachis hypogaea HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 47.0
MSTRG.17848 Avicennia marina HOM05D000108 ORTHO05D001149 3.1e-15 85.1 108 46.3
CiPaw.13G102700 Carya illinoinensis HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 46.1
Rhsim13G0089400 Rhododendron simsii HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 44.3
vmacro03137 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 3.1e-15 85.1 115 45.2
Gohir.D03G131700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.0e-15 84.7 119 44.5
Gorai.003G138600 Gossypium raimondii HOM05D000108 ORTHO05D001149 4.0e-15 84.7 119 44.5
Glyma.15G043400 Glycine max HOM05D000108 ORTHO05D001149 5.2e-15 84.3 115 46.1
Lalb_Chr14g0374921 Lupinus albus HOM05D000108 ORTHO05D001149 5.2e-15 84.3 115 42.6
Manes.04G028300 Manihot esculenta HOM05D000108 ORTHO05D001149 5.2e-15 84.3 115 46.1
CSS0041728 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 8.9e-15 83.6 115 46.1
GSVIVG01025071001 Vitis vinifera HOM05D000108 ORTHO05D001149 8.9e-15 83.6 115 45.2
QL01p035162 Quercus lobata HOM05D000108 ORTHO05D001149 1.2e-14 83.2 114 44.7
VMungo1127G1903 Vigna mungo HOM05D000108 ORTHO05D001149 1.2e-14 83.2 108 46.3
Ca_01363_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 1.5e-14 82.8 115 45.2
arahy.Tifrunner.gnm1.ann1.CITF9E Arachis hypogaea HOM05D000108 ORTHO05D001149 2.0e-14 82.4 116 44.8
Migut.N02645 Erythranthe guttata HOM05D000108 ORTHO05D001149 2.0e-14 82.4 116 44.0
Aqoxy4G03111 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 2.6e-14 82.0 112 46.4
Phvul.L002157 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 2.6e-14 82.0 110 45.5
Gohir.D05G099400 Gossypium hirsutum HOM05D000108 ORTHO05D001149 3.4e-14 81.6 115 44.3
Lalb_Chr19g0137571 Lupinus albus HOM05D000108 ORTHO05D001149 3.4e-14 81.6 105 47.6
PSO384G2763 Papaver somniferum HOM05D000108 ORTHO05D001149 3.4e-14 81.6 115 43.5
TAR633G1860 Trochodendron aralioides HOM05D000108 ORTHO05D001149 3.4e-14 81.6 115 44.3
VMungo1080G1229 Vigna mungo HOM05D000108 ORTHO05D001149 3.4e-14 81.6 110 44.5
Actinidia07086 Actinidia chinensis HOM05D000108 ORTHO05D001149 4.4e-14 81.3 115 44.3
Gohir.A03G036500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.4e-14 81.3 119 43.7
Oeu041005.1 Olea europaea HOM05D000108 ORTHO05D001149 4.4e-14 81.3 115 43.5
PSO339G0953 Papaver somniferum HOM05D000108 ORTHO05D001149 4.4e-14 81.3 115 43.5
Ah.08g215030 Amaranthus hybridus HOM05D000108 ORTHO05D001149 5.8e-14 80.9 112 42.9
EL10Ac7g15934 Beta vulgaris HOM05D000108 ORTHO05D001149 9.9e-14 80.1 112 43.8
MELO3C020688.2 Cucumis melo HOM05D000108 ORTHO05D001149 9.9e-14 80.1 115 41.7
Nn2g10569 Nelumbo nucifera HOM05D000108 ORTHO05D001149 9.9e-14 80.1 115 43.5
Oeu062312.1 Olea europaea HOM05D000108 ORTHO05D001149 9.9e-14 80.1 115 43.5
Psat5g281840 Pisum sativum HOM05D000108 ORTHO05D001149 9.9e-14 80.1 116 43.1
Sed0002914 Sechium edule HOM05D000108 ORTHO05D001149 9.9e-14 80.1 115 44.3
Hund05022 Selenicereus undatus HOM05D000108 ORTHO05D001149 9.9e-14 80.1 115 43.5
TPR.G11605 Trifolium pratense HOM05D000108 ORTHO05D001149 1.3e-13 79.7 110 45.5
Glyma.13G330600 Glycine max HOM05D000108 ORTHO05D001149 2.2e-13 79.0 59 62.7
Peaxi162Scf00072g00021 Petunia axillaris HOM05D000108 ORTHO05D001149 2.2e-13 79.0 115 40.9
PGSC0003DMG400015544 Solanum tuberosum HOM05D000108 ORTHO05D001149 2.2e-13 79.0 113 42.5
C03p00430 Brassica napus HOM05D000108 ORTHO05D011597 2.9e-13 78.6 95 55.8
ClCG03G001810 Citrullus lanatus HOM05D000108 ORTHO05D001149 2.9e-13 78.6 115 43.5
Cc01_g12000 Coffea canephora HOM05D000108 ORTHO05D001149 2.9e-13 78.6 116 43.1
Gorai.009G103300 Gossypium raimondii HOM05D000108 ORTHO05D001149 2.9e-13 78.6 115 43.5
Os05g0117798 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001149 2.9e-13 78.6 113 41.6
ECA248G3318 Erigeron canadensis HOM05D000108 ORTHO05D001149 3.8e-13 78.2 109 39.4
Medtr2g096010 Medicago truncatula HOM05D000108 ORTHO05D001149 4.9e-13 77.8 115 42.6
PGR119G0104 Punica granatum HOM05D000108 ORTHO05D001149 4.9e-13 77.8 115 43.5
CsaV3_1G033760 Cucumis sativus L. HOM05D000108 ORTHO05D001149 6.4e-13 77.4 115 40.9
Sed0013938 Sechium edule HOM05D000108 ORTHO05D001149 6.4e-13 77.4 116 41.4
CAN.G84.2 Capsicum annuum HOM05D000108 ORTHO05D001149 8.4e-13 77.0 57 61.4
AUR62001858 Chenopodium quinoa HOM05D000108 ORTHO05D001149 8.4e-13 77.0 112 42.9
AUR62009653 Chenopodium quinoa HOM05D000108 ORTHO05D001149 1.4e-12 76.3 112 42.9
Lalb_Chr22g0350061 Lupinus albus HOM05D000108 ORTHO05D001149 1.4e-12 76.3 114 42.1
Nitab4.5_0000182g0040 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.4e-12 76.3 115 40.9
Nitab4.5_0000270g0170 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.4e-12 76.3 115 40.9
HanXRQChr05g0133911 Helianthus annuus HOM05D000108 ORTHO05D001149 1.9e-12 75.9 113 43.4
SGA_v2.0_scaffold104G30113 Striga asiatica HOM05D000108 ORTHO05D001149 1.9e-12 75.9 100 46.0
ATR0594G216 Amborella trichopoda HOM05D000108 ORTHO05D001149 3.2e-12 75.1 112 39.3
Solyc11g072820.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 4.2e-12 74.7 57 59.6
Sopen11g030490 Solanum pennellii HOM05D000108 ORTHO05D001149 4.2e-12 74.7 57 59.6
THA.LOC104815761 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 4.2e-12 74.7 116 38.8
Nitab4.5_0003784g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001149 5.4e-12 74.3 57 59.6
Lsat_1_v5_gn_5_166981 Lactuca sativa HOM05D000108 ORTHO05D001149 7.1e-12 73.9 101 43.6
MBI14_g42160_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 7.1e-12 73.9 117 39.3
Nitab4.5_0002380g0100 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.2e-11 73.2 57 57.9
Peaxi162Scf00836g00218 Petunia axillaris HOM05D000108 ORTHO05D001149 1.6e-11 72.8 59 57.6
Sc21g0005340 Simmondsia chinensis HOM05D000108 ORTHO05D001149 1.6e-11 72.8 115 40.0
A06p15180 Brassica napus HOM05D000108 ORTHO05D011597 2.1e-11 72.4 88 51.1
CAN.G394.9 Capsicum annuum HOM05D000108 ORTHO05D001149 2.7e-11 72.0 115 40.0
Lj1A178T40 Lonicera japonica HOM05D000108 ORTHO05D001149 2.7e-11 72.0 123 40.7
HanXRQChr04g0110361 Helianthus annuus HOM05D000108 ORTHO05D001149 3.5e-11 71.6 106 37.7
Dinv35678 Davidia involucrata HOM05D000108 ORTHO05D001149 4.6e-11 71.2 107 43.0
Lsat_1_v5_gn_8_76521 Lactuca sativa HOM05D000108 ORTHO05D001149 6.0e-11 70.9 119 41.2
unitig_0.g1033 Utricularia gibba HOM05D000108 ORTHO05D001149 6.0e-11 70.9 109 34.9
PGSC0003DMG400030391 Solanum tuberosum HOM05D000108 ORTHO05D001149 7.8e-11 70.5 108 39.8
CDE09G0015 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 3.0e-10 68.6 112 40.2
ECA236G0719 Erigeron canadensis HOM05D000108 ORTHO05D001149 3.0e-10 68.6 117 40.2
Solyc06g075580.4 Solanum lycopersicum HOM05D000108 ORTHO05D001149 3.0e-10 68.6 108 38.0
Sopen06g031970 Solanum pennellii HOM05D000108 ORTHO05D001149 3.0e-10 68.6 108 38.0
Zm00001eb265660 Zea mays HOM05D000108 ORTHO05D001149 8.7e-10 67.0 56 53.6
BolC6t37314H Brassica oleracea HOM05D000313 ORTHO05D011597 1.1e-09 66.6 37 78.4
DCAR_006021 Daucus carota HOM05D000108 ORTHO05D011597 1.1e-09 66.6 110 42.7
Aa31LG5G7600 Aethionema arabicum HOM05D000108 ORTHO05D001149 1.5e-09 66.2 102 38.2
HPP92_000644 Vanilla planifolia HOM05D000108 ORTHO05D001149 1.5e-09 66.2 116 36.2
Sc12g0001870 Simmondsia chinensis HOM05D000108 ORTHO05D001149 2.5e-09 65.5 115 38.3
SalBow3G0765 Salvia bowleyana HOM05D000108 ORTHO05D001149 4.3e-09 64.7 105 39.0
Hma1.2p1_0000F.1_g000500 Hydrangea macrophylla HOM05D000108 ORTHO05D011597 9.6e-09 63.5 59 54.2
THA.LOC104826348 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 9.6e-09 63.5 114 37.7
HPP92_000702 Vanilla planifolia HOM05D000108 ORTHO05D001149 1.3e-08 63.2 116 34.5
AL4G23120 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 1.6e-08 62.8 103 38.8
AT2G28620 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 1.6e-08 62.8 103 39.8
CARHR121650 Cardamine hirsuta HOM05D000108 ORTHO05D001149 2.1e-08 62.4 102 39.2
Nitab4.5_0000643g0230 Nicotiana tabacum HOM05D000108 ORTHO05D001149 6.2e-08 60.8 56 51.8
Eucgr.B02433 Eucalyptus grandis HOM05D000108 ORTHO05D001149 8.1e-08 60.5 112 35.7
SEGI_04840 Sequoiadendron giganteum HOM05D000108 ORTHO05D001149 1.1e-07 60.1 115 34.8
CDE02G1599 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 1.4e-07 59.7 56 51.8
Nitab4.5_0006252g0050 Nicotiana tabacum HOM05D000108 ORTHO05D001149 2.4e-07 58.9 56 50.0
A04p21690 Brassica napus HOM05D000108 ORTHO05D001149 1.5e-06 56.2 103 38.8
BraA04t17733Z Brassica rapa HOM05D000108 ORTHO05D001149 1.5e-06 56.2 103 38.8
SHI33541 Sapria himalayana HOM05D000108 ORTHO05D029946 2.0e-06 55.8 56 51.8
Thhalv10016147m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 2.6e-06 55.5 104 33.7
SHI05982 Sapria himalayana HOM05D000108 ORTHO05D001149 3.4e-06 55.1 113 36.3
PGSC0003DMG400002026 Solanum tuberosum HOM05D000108 ORTHO05D001149 3.4e-06 55.1 56 48.2
BcaB06g28234 Brassica carinata HOM05D000108 ORTHO05D001149 4.4e-06 54.7 103 36.9
Sp4g11450 Schrenkiella parvula HOM05D000108 ORTHO05D001149 5.8e-06 54.3 103 37.9
BcaC02g08155 Brassica carinata HOM05D000108 ORTHO05D001149 9.9e-06 53.5 103 37.9
C04p57810 Brassica napus HOM05D000108 ORTHO05D001149 9.9e-06 53.5 103 37.9
BolC4t27300H Brassica oleracea HOM05D000108 ORTHO05D001149 9.9e-06 53.5 103 37.9
Solyc09g007030.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 9.9e-06 53.5 56 48.2
Sopen09g001890 Solanum pennellii HOM05D000108 ORTHO05D001149 9.9e-06 53.5 56 48.2


User provided reference genes

Program Settings