Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p31730 Brassica napus HOM05D000142 ORTHO05D027080 2.5e-43 178.3 88 100.0
BolC9t56028H Brassica oleracea HOM05D000142 ORTHO05D027080 2.5e-43 178.3 88 100.0
BolC9t56035H Brassica oleracea HOM05D000142 ORTHO05D027080 9.3e-38 159.8 88 93.2
BcaC04g21437 Brassica carinata HOM05D000142 ORTHO05D008707 4.6e-29 131.0 78 88.5
BcaC04g21440 Brassica carinata HOM05D000142 ORTHO05D027080 5.1e-28 127.5 62 100.0
C09p31780 Brassica napus HOM05D000142 ORTHO05D097858 2.2e-23 112.1 54 100.0
Thhalv10023650m.g Eutrema salsugineum HOM05D000142 ORTHO05D008707 1.1e-22 109.8 87 66.7
AL2G16690 Arabidopsis lyrata HOM05D000142 ORTHO05D008707 2.5e-22 108.6 90 66.7
Sp2g04580 Schrenkiella parvula HOM05D000142 ORTHO05D008707 1.3e-20 102.8 87 64.4
BcaB07g31197 Brassica carinata HOM05D000142 ORTHO05D008707 1.8e-20 102.4 87 63.2
AT1G60000 Arabidopsis thaliana HOM05D000142 ORTHO05D008707 3.0e-20 101.7 88 63.6
BolC9t55123H Brassica oleracea HOM05D000142 ORTHO05D008707 5.1e-20 100.9 88 64.8
C09p22100 Brassica napus HOM05D000142 ORTHO05D008707 8.7e-20 100.1 88 64.8
A09p17750 Brassica napus HOM05D000142 ORTHO05D008707 1.9e-19 99.0 88 63.6
Carub.0002s0524 Capsella rubella HOM05D000142 ORTHO05D008707 2.5e-19 98.6 88 58.0
BcaC04g22208 Brassica carinata HOM05D000142 ORTHO05D008707 9.7e-19 96.7 87 60.9
BraA09t37407Z Brassica rapa HOM05D000142 ORTHO05D008707 1.1e-17 93.2 87 60.9
CARHR052980 Cardamine hirsuta HOM05D000142 ORTHO05D008707 6.9e-17 90.5 88 60.2
Aa31LG2G10220 Aethionema arabicum HOM05D000142 ORTHO05D008707 3.2e-14 81.6 70 57.1
Cc03_g06360 Coffea canephora HOM05D000142 ORTHO05D008707 2.8e-10 68.6 61 52.5
Gohir.A02G043100 Gossypium hirsutum HOM05D000142 ORTHO05D008707 4.8e-10 67.8 67 49.3
PGR031G0844 Punica granatum HOM05D000142 ORTHO05D008707 6.3e-10 67.4 64 48.4
PGR031G1075 Punica granatum HOM05D000142 ORTHO05D008707 6.3e-10 67.4 64 48.4
Lj6g0019999 Lotus japonicus HOM05D000142 ORTHO05D008707 1.1e-09 66.6 57 47.4
MBI07_g23233_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D008707 1.4e-09 66.2 56 55.4
Atru.chr4.1912 Acer truncatum HOM05D000142 ORTHO05D008707 2.4e-09 65.5 56 57.1
Ciclev10005487m.g Citrus clementina HOM05D000142 ORTHO05D008707 2.4e-09 65.5 44 63.6
Gorai.005G054000 Gossypium raimondii HOM05D000142 ORTHO05D008707 2.4e-09 65.5 58 51.7
Manes.15G045900 Manihot esculenta HOM05D000142 ORTHO05D008707 2.4e-09 65.5 69 49.3
CDE11G0470 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 3.1e-09 65.1 56 53.6
Lalb_Chr11g0062571 Lupinus albus HOM05D000142 ORTHO05D008707 3.1e-09 65.1 93 43.0
GSVIVG01027917001 Vitis vinifera HOM05D000142 ORTHO05D008707 3.1e-09 65.1 56 51.8
CSS0014702 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008707 4.1e-09 64.7 42 66.7
Eucgr.H00128 Eucalyptus grandis HOM05D000142 ORTHO05D008707 4.1e-09 64.7 41 68.3
CiPaw.01G177800 Carya illinoinensis HOM05D000142 ORTHO05D008707 5.3e-09 64.3 66 45.5
Glyma.20G082800 Glycine max HOM05D000142 ORTHO05D008707 5.3e-09 64.3 58 51.7
THA.LOC104820371 Tarenaya hassleriana HOM05D000142 ORTHO05D008707 5.3e-09 64.3 40 70.0
ECA238G2020 Erigeron canadensis HOM05D000142 ORTHO05D008707 6.9e-09 63.9 70 45.7
FAN22G1925 Fragaria x ananassa HOM05D000142 ORTHO05D008707 6.9e-09 63.9 65 50.8
Gohir.D02G048800 Gossypium hirsutum HOM05D000142 ORTHO05D008707 6.9e-09 63.9 71 46.5
Peaxi162Scf01044g00229 Petunia axillaris HOM05D000142 ORTHO05D008707 6.9e-09 63.9 55 54.5
TWI53G0893 Tripterygium wilfordii HOM05D000142 ORTHO05D008707 6.9e-09 63.9 40 70.0
FvH4_4g04650 Fragaria vesca HOM05D000142 ORTHO05D008707 9.1e-09 63.5 65 49.2
FAN12G0039 Fragaria x ananassa HOM05D000142 ORTHO05D008707 9.1e-09 63.5 65 49.2
CsaV3_3G011660 Cucumis sativus L. HOM05D000142 ORTHO05D008707 1.2e-08 63.2 67 46.3
Potri.010G065600 Populus trichocarpa HOM05D000142 ORTHO05D008707 1.2e-08 63.2 72 41.7
VMungo0720G0303 Vigna mungo HOM05D000142 ORTHO05D008707 1.2e-08 63.2 59 49.2
MSTRG.9853 Avicennia marina HOM05D000142 ORTHO05D008707 2.0e-08 62.4 62 53.2
Lsat_1_v5_gn_2_41261 Lactuca sativa HOM05D000142 ORTHO05D008707 2.0e-08 62.4 75 48.0
Phvul.007G231600 Phaseolus vulgaris HOM05D000142 ORTHO05D008707 2.0e-08 62.4 57 50.9
RcHm_v2.0_Chr4g0395451 Rosa chinensis HOM05D000142 ORTHO05D008707 2.0e-08 62.4 41 63.4
PGSC0003DMG400001495 Solanum tuberosum HOM05D000322 ORTHO05D008707 2.0e-08 62.4 61 54.1
Cfa014785 Carpinus fangiana HOM05D000142 ORTHO05D008707 2.6e-08 62.0 62 53.2
CDE05G1401 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 2.6e-08 62.0 49 55.1
AUR62015243 Chenopodium quinoa HOM05D000142 ORTHO05D008707 2.6e-08 62.0 54 51.9
DCAR_030763 Daucus carota HOM05D000142 ORTHO05D008707 2.6e-08 62.0 55 52.7
vmacro08555 Vaccinium macrocarpon HOM05D000142 ORTHO05D008707 2.6e-08 62.0 64 50.0
MELO3C006373.2 Cucumis melo HOM05D000622 ORTHO05D000475 3.4e-08 61.6 67 46.3
Glyma.10G134100 Glycine max HOM05D000142 ORTHO05D008707 3.4e-08 61.6 58 48.3
HanXRQChr06g0182811 Helianthus annuus HOM05D000142 ORTHO05D008707 3.4e-08 61.6 62 51.6
MD16G1226600 Malus domestica HOM05D000142 ORTHO05D008707 3.4e-08 61.6 40 65.0
Cpa.g.sc59.2 Carica papaya HOM05D000142 ORTHO05D008707 4.5e-08 61.2 48 56.2
Haze_11461 Corylus avellana HOM05D000142 ORTHO05D008707 4.5e-08 61.2 62 53.2
FAN17G0298 Fragaria x ananassa HOM05D000142 ORTHO05D008707 4.5e-08 61.2 65 47.7
Prupe.1G048800 Prunus persica HOM05D000142 ORTHO05D008707 4.5e-08 61.2 55 52.7
Rhsim04G0172200 Rhododendron simsii HOM05D000142 ORTHO05D008707 4.5e-08 61.2 42 64.3
CiPaw.02G106800 Carya illinoinensis HOM05D000142 ORTHO05D008707 5.9e-08 60.8 56 50.0
Duzib052G0404 Durio zibethinus HOM05D000142 ORTHO05D008707 5.9e-08 60.8 40 62.5
Lalb_Chr08g0245371 Lupinus albus HOM05D000142 ORTHO05D008707 7.7e-08 60.5 41 61.0
Dinv27114 Davidia involucrata HOM05D000142 ORTHO05D008707 1.0e-07 60.1 40 65.0
Lalb_Chr23g0267081 Lupinus albus HOM05D000142 ORTHO05D008707 1.0e-07 60.1 60 48.3
Oeu011219.1 Olea europaea HOM05D000142 ORTHO05D008707 1.0e-07 60.1 55 52.7
Sc25g0004820 Simmondsia chinensis HOM05D000142 ORTHO05D008707 1.0e-07 60.1 40 62.5
Solyc09g090960.4 Solanum lycopersicum HOM05D000142 ORTHO05D008707 1.0e-07 60.1 40 65.0
Sopen09g033930 Solanum pennellii HOM05D000142 ORTHO05D008707 1.0e-07 60.1 40 65.0
Nn1g02963 Nelumbo nucifera HOM05D000142 ORTHO05D008707 1.3e-07 59.7 54 51.9
PSO063G2892 Papaver somniferum HOM05D000142 ORTHO05D008707 1.3e-07 59.7 55 52.7
Thecc.04G265200 Theobroma cacao HOM05D000142 ORTHO05D008707 1.3e-07 59.7 40 62.5
CANSAT78G1664 Cannabis sativa HOM05D000142 ORTHO05D008707 1.7e-07 59.3 39 64.1
Actinidia35817 Actinidia chinensis HOM05D000142 ORTHO05D008707 2.2e-07 58.9 40 67.5
arahy.Tifrunner.gnm1.ann1.6KMR2U Arachis hypogaea HOM05D000142 ORTHO05D008707 2.2e-07 58.9 42 54.8
arahy.Tifrunner.gnm1.ann1.H5FPK5 Arachis hypogaea HOM05D000142 ORTHO05D008707 2.2e-07 58.9 42 54.8
Dinv29802 Davidia involucrata HOM05D000142 ORTHO05D008707 2.2e-07 58.9 55 49.1
Lj6A621T58 Lonicera japonica HOM05D000142 ORTHO05D008707 2.2e-07 58.9 47 55.3
Potri.008G172100 Populus trichocarpa HOM05D000142 ORTHO05D008707 2.2e-07 58.9 64 43.8
COL.COLO4_15969 Corchorus olitorius HOM05D000142 ORTHO05D008707 2.9e-07 58.5 40 57.5
Actinidia20839 Actinidia chinensis HOM05D000142 ORTHO05D008707 3.8e-07 58.2 63 52.4
Os02g0815200 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D008707 3.8e-07 58.2 42 61.9
PSO017G3166 Papaver somniferum HOM05D000142 ORTHO05D008707 3.8e-07 58.2 55 52.7
TAR362G1001 Trochodendron aralioides HOM05D000142 ORTHO05D008707 3.8e-07 58.2 40 60.0
Aqoxy2G03748 Aquilegia oxysepala HOM05D000142 ORTHO05D008707 6.5e-07 57.4 46 56.5
ClCG05G003980 Citrullus lanatus HOM05D000142 ORTHO05D008707 6.5e-07 57.4 74 39.2
Duzib151G0723 Durio zibethinus HOM05D000142 ORTHO05D008707 6.5e-07 57.4 40 60.0
SalBow2G0099 Salvia bowleyana HOM05D000142 ORTHO05D008707 6.5e-07 57.4 39 66.7
SEGI_08246 Sequoiadendron giganteum HOM05D000142 ORTHO05D008707 6.5e-07 57.4 56 46.4
Ca_11894_v3 Cicer arietinum L. HOM05D000142 ORTHO05D008707 8.5e-07 57.0 38 60.5
Zm00001eb258730 Zea mays HOM05D000142 ORTHO05D008707 8.5e-07 57.0 42 57.1
Migut.G00576 Erythranthe guttata HOM05D000142 ORTHO05D008707 1.1e-06 56.6 42 59.5
Medtr1g045510 Medicago truncatula HOM05D000142 ORTHO05D008707 1.1e-06 56.6 51 51.0
AUR62018041 Chenopodium quinoa HOM05D000142 ORTHO05D008707 1.4e-06 56.2 80 40.0
TPR.G23968 Trifolium pratense HOM05D000142 ORTHO05D008707 1.4e-06 56.2 52 46.2
Hma1.2p1_0385F.1_g141580 Hydrangea macrophylla HOM05D000142 ORTHO05D008707 1.9e-06 55.8 40 62.5
Mapoly0012s0133 Marchantia polymorpha HOM05D000142 ORTHO05D001253 1.9e-06 55.8 78 41.0
QL06p021032 Quercus lobata HOM05D000142 ORTHO05D008707 2.5e-06 55.5 62 43.5
EL10Ac3g06671 Beta vulgaris HOM05D000142 ORTHO05D008707 3.2e-06 55.1 40 60.0
Sed0012538 Sechium edule HOM05D000142 ORTHO05D008707 3.2e-06 55.1 56 46.4
FvH4_5g06660 Fragaria vesca HOM05D000142 ORTHO05D001253 4.2e-06 54.7 55 47.3
FAN08G0414 Fragaria x ananassa HOM05D000142 ORTHO05D001253 4.2e-06 54.7 55 47.3
FAN13G2846 Fragaria x ananassa HOM05D000142 ORTHO05D001253 4.2e-06 54.7 55 47.3
FAN18G2801 Fragaria x ananassa HOM05D000142 ORTHO05D001253 4.2e-06 54.7 55 47.3
RcHm_v2.0_Chr7g0192001 Rosa chinensis HOM05D000142 ORTHO05D001253 4.2e-06 54.7 55 47.3
Oeu061878.1 Olea europaea HOM05D000142 ORTHO05D008707 7.2e-06 53.9 63 46.0
Hund24876 Selenicereus undatus HOM05D000142 ORTHO05D008707 7.2e-06 53.9 40 57.5
BcaB02g09298 Brassica carinata HOM05D000142 ORTHO05D001253 9.4e-06 53.5 82 37.8
FAN04G1028 Fragaria x ananassa HOM05D000142 ORTHO05D001253 9.4e-06 53.5 55 45.5
HPP92_025827 Vanilla planifolia HOM05D000142 ORTHO05D008707 9.4e-06 53.5 90 37.8


User provided reference genes

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