Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p31620 Brassica napus HOM05D007877 ORTHO05D009957 8.1e-45 183.3 91 100.0
ATMG00570 Arabidopsis thaliana HOM05D007877 ORTHO05D009957 1.0e-18 96.7 53 92.5
C04p19590 Brassica napus HOM05D007877 ORTHO05D009957 1.0e-18 96.7 53 92.5
BraSC177t45764Z Brassica rapa HOM05D007877 ORTHO05D009957 1.0e-18 96.7 53 92.5
BraSC48t46272Z Brassica rapa HOM05D007877 ORTHO05D009957 1.0e-18 96.7 53 92.5
CARHR282940 Cardamine hirsuta HOM05D007877 ORTHO05D009957 1.0e-18 96.7 53 92.5
BolC4t23493H Brassica oleracea HOM05D007877 ORTHO05D009957 2.9e-18 95.1 53 90.6
AUR62026822 Chenopodium quinoa HOM05D000743 ORTHO05D000580 1.1e-17 93.2 53 88.7
AUR62042354 Chenopodium quinoa HOM05D000743 ORTHO05D000580 1.1e-17 93.2 53 88.7
AUR62043788 Chenopodium quinoa HOM05D000743 ORTHO05D000580 1.1e-17 93.2 53 88.7
Aa31csc239G30 Aethionema arabicum HOM05D007877 ORTHO05D009957 2.5e-17 92.0 53 88.7
RcHm_v2.0_MTg0499111 Rosa chinensis HOM05D007877 ORTHO05D009957 2.5e-17 92.0 53 88.7
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 3.2e-17 91.7 53 86.8
LjContig00315g0025322 Lotus japonicus HOM05D007877 ORTHO05D009957 3.2e-17 91.7 53 86.8
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 5.5e-17 90.9 53 86.8
TPR.G17000 Trifolium pratense HOM05D007877 ORTHO05D009957 5.5e-17 90.9 51 90.2
CANSAT16G0008 Cannabis sativa HOM05D007877 ORTHO05D009957 7.2e-17 90.5 53 86.8
Nitab4.5_0009703g0110 Nicotiana tabacum HOM05D007877 ORTHO05D009957 7.2e-17 90.5 63 74.6
arahy.Tifrunner.gnm1.ann1.SK2G41 Arachis hypogaea HOM05D007877 ORTHO05D009957 9.3e-17 90.1 53 84.9
BraSC77t46652Z Brassica rapa HOM05D007877 ORTHO05D009957 1.2e-16 89.7 48 93.8
DCAR_032450 Daucus carota HOM05D007877 ORTHO05D009957 1.6e-16 89.4 53 86.8
CsaV3_UNG208000 Cucumis sativus L. HOM05D007877 ORTHO05D009957 2.1e-16 89.0 53 83.0
Lalb_Chr00c29g0408181 Lupinus albus HOM05D007877 ORTHO05D009957 2.1e-16 89.0 53 84.9
Lalb_Chr22g0358751 Lupinus albus HOM05D007877 ORTHO05D009957 2.1e-16 89.0 53 84.9
Psat0s552g0160 Pisum sativum HOM05D007877 ORTHO05D009957 2.1e-16 89.0 51 86.3
CAN.G1159.16 Capsicum annuum HOM05D007877 ORTHO05D009957 7.9e-16 87.0 57 78.9
Lj2P1225T96 Lonicera japonica HOM05D007877 ORTHO05D009957 7.9e-16 87.0 53 84.9
unitig_87.g27972 Utricularia gibba HOM05D007877 ORTHO05D009957 7.9e-16 87.0 53 81.1
Solyc00g500168.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.0e-15 86.7 53 84.9
Solyc00g500237.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.0e-15 86.7 53 84.9
Solyc00g500346.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.0e-15 86.7 53 84.9
Solyc00g500357.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 1.0e-15 86.7 53 84.9
TAR371G0168 Trochodendron aralioides HOM05D007877 ORTHO05D009957 5.1e-15 84.3 53 83.0
Zm00001eb436210 Zea mays HOM05D007877 ORTHO05D009957 1.1e-14 83.2 51 82.4
Zm00001eb436260 Zea mays HOM05D007877 ORTHO05D009957 1.1e-14 83.2 51 82.4
Zm00001eb436450 Zea mays HOM05D007877 ORTHO05D009957 1.1e-14 83.2 51 82.4
Zm00001eb436490 Zea mays HOM05D007877 ORTHO05D009957 1.1e-14 83.2 51 82.4
Zm00001eb441030 Zea mays HOM05D007877 ORTHO05D009957 1.1e-14 83.2 51 82.4
RhsimMtG0001700 Rhododendron simsii HOM05D007877 ORTHO05D009957 1.9e-14 82.4 53 81.1
RhsimMtG0004900 Rhododendron simsii HOM05D007877 ORTHO05D009957 1.9e-14 82.4 53 81.1
HanXRQChr00c0055g0571431 Helianthus annuus HOM05D007877 ORTHO05D009957 2.5e-14 82.0 53 81.1
HanXRQChr00c0234g0572751 Helianthus annuus HOM05D007877 ORTHO05D009957 2.5e-14 82.0 53 81.1
HanXRQMTg0579501 Helianthus annuus HOM05D007877 ORTHO05D009957 2.5e-14 82.0 53 81.1
Lsat_1_v5_gn_2_125060 Lactuca sativa HOM05D007877 ORTHO05D009957 2.5e-14 82.0 53 81.1
Lsat_1_v5_gn_9_49261 Lactuca sativa HOM05D007877 ORTHO05D009957 2.5e-14 82.0 53 81.1
Aqoxy12s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 4.3e-14 81.3 53 77.4
Aqoxy38s004 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 4.3e-14 81.3 53 77.4
Psat0s1774g0160 Pisum sativum HOM05D007877 ORTHO05D009957 2.2e-13 79.0 52 80.8
Aqoxy1G02979 Aquilegia oxysepala HOM05D007877 ORTHO05D009957 2.8e-13 78.6 51 78.4
Solyc10g062070.1 Solanum lycopersicum HOM05D007877 ORTHO05D009957 2.4e-12 75.5 65 64.6
SHI55214 Sapria himalayana HOM05D007877 ORTHO05D009957 4.1e-12 74.7 52 75.0
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 7.7e-11 70.5 54 72.2
PSO133G0099 Papaver somniferum HOM05D007877 ORTHO05D009957 1.7e-10 69.3 51 68.6
PSO384G0556 Papaver somniferum HOM05D007877 ORTHO05D009957 3.8e-10 68.2 51 66.7
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 1.1e-09 66.6 37 83.8
PSO541G3164 Papaver somniferum HOM05D007877 ORTHO05D009957 1.4e-09 66.2 51 64.7
Peaxi162Scf00931g00018 Petunia axillaris HOM05D007877 ORTHO05D009957 7.2e-09 63.9 37 89.2
CARHR288300 Cardamine hirsuta HOM05D007877 ORTHO05D009957 6.1e-08 60.8 31 93.5
Nn1g10077 Nelumbo nucifera HOM05D007877 ORTHO05D009957 1.0e-07 60.1 38 84.2
Nn1g10099 Nelumbo nucifera HOM05D007877 ORTHO05D009957 1.0e-07 60.1 38 84.2
BolC6t36215H Brassica oleracea HOM05D007877 ORTHO05D009957 6.7e-07 57.4 38 78.9
SalBow1G2595 Salvia bowleyana HOM05D009805 ORTHO05D010994 6.7e-07 57.4 40 77.5
SEGI_02417 Sequoiadendron giganteum HOM05D007877 ORTHO05D009957 8.8e-07 57.0 53 60.4
Peaxi162Scf00508g00001 Petunia axillaris HOM05D007877 ORTHO05D009957 1.1e-06 56.6 31 87.1


User provided reference genes

Program Settings