Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p31480 Brassica napus HOM05D000108 ORTHO05D014103 1.0e-70 270.0 142 100.0
BolC9t56007H Brassica oleracea HOM05D000108 ORTHO05D014103 1.0e-70 270.0 142 100.0
BcaC04g21465 Brassica carinata HOM05D000108 ORTHO05D014103 3.7e-68 261.5 138 100.0
C09p40020 Brassica napus HOM05D000108 ORTHO05D014103 3.7e-68 261.5 142 97.9
BolC9t56899H Brassica oleracea HOM05D000108 ORTHO05D014103 3.7e-68 261.5 142 97.9
BcaC04g20709 Brassica carinata HOM05D000108 ORTHO05D014103 1.3e-65 253.1 138 97.8
BcaC06g33995 Brassica carinata HOM05D000108 ORTHO05D014103 1.8e-59 232.6 155 83.2
C07p33910 Brassica napus HOM05D000108 ORTHO05D014103 1.8e-59 232.6 155 83.2
C02p25070 Brassica napus HOM05D000108 ORTHO05D014103 1.5e-58 229.6 155 82.6
BolC7t43905H Brassica oleracea HOM05D000108 ORTHO05D014103 1.4e-56 223.0 152 81.6
BcaC02g07526 Brassica carinata HOM05D000108 ORTHO05D001149 2.5e-56 222.2 152 80.3
BcaB06g28989 Brassica carinata HOM05D000108 ORTHO05D001149 4.2e-56 221.5 152 80.3
BraA04t18334Z Brassica rapa HOM05D000108 ORTHO05D001149 1.6e-55 219.5 152 79.6
C04p65890 Brassica napus HOM05D000108 ORTHO05D001149 6.1e-55 217.6 152 78.3
BolC4t28093H Brassica oleracea HOM05D000108 ORTHO05D001149 5.1e-54 214.5 152 77.0
Sp4g19760 Schrenkiella parvula HOM05D000108 ORTHO05D001149 5.1e-54 214.5 152 78.3
A04p28560 Brassica napus HOM05D000108 ORTHO05D001149 8.7e-54 213.8 153 78.4
AL4G33810 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 1.2e-47 193.4 151 72.2
Carub.0004s1934 Capsella rubella HOM05D000108 ORTHO05D001149 1.2e-47 193.4 152 69.7
Thhalv10016170m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 1.2e-47 193.4 152 69.7
AT2G37420 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 1.5e-45 186.4 150 69.3
CARHR132170 Cardamine hirsuta HOM05D000108 ORTHO05D001149 6.3e-44 181.0 154 65.6
BcaC02g08397 Brassica carinata HOM05D000108 ORTHO05D014103 5.7e-37 157.9 152 63.2
BcaB04g19587 Brassica carinata HOM05D000108 ORTHO05D014103 1.9e-32 142.9 114 73.7
Aa31LG5G22850 Aethionema arabicum HOM05D000108 ORTHO05D001149 4.2e-32 141.7 152 53.9
THA.LOC104806586 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 4.0e-30 135.2 150 52.7
Thecc.05G045800 Theobroma cacao HOM05D000108 ORTHO05D001149 1.1e-19 100.5 156 39.1
Ciclev10010956m.g Citrus clementina HOM05D000108 ORTHO05D001149 4.5e-18 95.1 154 39.6
CsaV3_4G024680 Cucumis sativus L. HOM05D000108 ORTHO05D001149 2.3e-17 92.8 153 40.5
Gohir.A04G079500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 2.3e-17 92.8 163 36.2
MELO3C003101.2 Cucumis melo HOM05D000108 ORTHO05D001149 3.8e-17 92.0 126 46.8
Dinv35646 Davidia involucrata HOM05D000108 ORTHO05D001149 6.5e-17 91.3 155 38.7
Cfa017438 Carpinus fangiana HOM05D000108 ORTHO05D001149 1.1e-16 90.5 152 39.5
VMungo0720G0253 Vigna mungo HOM05D000108 ORTHO05D001149 1.1e-16 90.5 118 45.8
Duzib106G1757 Durio zibethinus HOM05D000108 ORTHO05D001149 3.3e-16 89.0 163 34.4
QL07p046713 Quercus lobata HOM05D000108 ORTHO05D001149 3.3e-16 89.0 147 40.1
Haze_20725 Corylus avellana HOM05D000108 ORTHO05D001149 4.2e-16 88.6 155 39.4
Lj5g0001196 Lotus japonicus HOM05D000108 ORTHO05D001149 5.5e-16 88.2 151 36.4
Manes.08G076715 Manihot esculenta HOM05D000108 ORTHO05D001149 5.5e-16 88.2 156 36.5
Gorai.009G423900 Gossypium raimondii HOM05D000108 ORTHO05D001149 9.5e-16 87.4 162 35.2
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.8e-15 85.9 156 39.7
CiPaw.09G187900 Carya illinoinensis HOM05D000108 ORTHO05D001149 3.6e-15 85.5 153 39.9
Atru.chr8.1922 Acer truncatum HOM05D000108 ORTHO05D001149 8.0e-15 84.3 155 33.5
Psat6g068920 Pisum sativum HOM05D000108 ORTHO05D001149 1.0e-14 84.0 121 43.0
Sed0024726 Sechium edule HOM05D000108 ORTHO05D001149 1.4e-14 83.6 118 41.5
BcaC02g07525 Brassica carinata HOM05D000108 ORTHO05D014103 2.3e-14 82.8 106 52.8
PGR004G0532 Punica granatum HOM05D000108 ORTHO05D001149 5.2e-14 81.6 159 34.0
Eucgr.K03170 Eucalyptus grandis HOM05D000108 ORTHO05D001149 8.9e-14 80.9 156 35.9
Phvul.007G159100 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 8.9e-14 80.9 120 40.8
TWI74G1599 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 1.2e-13 80.5 161 32.9
Nitab4.5_0000349g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001149 2.6e-13 79.3 146 35.6
Glyma.10G045500 Glycine max HOM05D000108 ORTHO05D001149 3.4e-13 79.0 119 44.5
Nitab4.5_0000527g0080 Nicotiana tabacum HOM05D000108 ORTHO05D001149 4.4e-13 78.6 146 34.9
Potri.006G082900 Populus trichocarpa HOM05D000108 ORTHO05D001149 5.7e-13 78.2 161 36.6
Sed0000666 Sechium edule HOM05D000108 ORTHO05D001149 7.5e-13 77.8 118 43.2
SGA_v2.0_scaffold126G33836 Striga asiatica HOM05D000108 ORTHO05D001149 7.5e-13 77.8 147 36.1
BcaB06g26258 Brassica carinata HOM05D000108 ORTHO05D014103 9.8e-13 77.4 58 72.4
Migut.J00371 Erythranthe guttata HOM05D000108 ORTHO05D001149 1.7e-12 76.6 148 34.5
GSVIVG01025610001 Vitis vinifera HOM05D000108 ORTHO05D001149 1.7e-12 76.6 155 34.8
Ca_09598_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 2.2e-12 76.3 118 40.7
Oeu059991.1 Olea europaea HOM05D000108 ORTHO05D001149 2.8e-12 75.9 115 40.9
MSTRG.5691 Avicennia marina HOM05D000108 ORTHO05D001149 8.3e-12 74.3 153 34.6
MD12G1136800 Malus domestica HOM05D000108 ORTHO05D001149 1.1e-11 73.9 148 38.5
COL.COLO4_14867 Corchorus olitorius HOM05D000108 ORTHO05D014103 1.4e-11 73.6 111 38.7
Solyc10g086340.1 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.4e-11 73.6 118 38.1
Glyma.13G133200 Glycine max HOM05D000108 ORTHO05D001149 1.8e-11 73.2 120 40.8
Medtr1g067630 Medicago truncatula HOM05D000108 ORTHO05D001149 1.8e-11 73.2 118 38.1
PSO339G4855 Papaver somniferum HOM05D000108 ORTHO05D001149 1.8e-11 73.2 137 38.0
Prupe.6G249200 Prunus persica HOM05D000108 ORTHO05D001149 1.8e-11 73.2 148 37.8
CSS0011697 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 3.1e-11 72.4 148 33.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 3.1e-11 72.4 148 33.8
PSO648G0020 Papaver somniferum HOM05D000108 ORTHO05D001149 3.1e-11 72.4 137 36.5
Sabra06G0062600 Salix brachista HOM05D000108 ORTHO05D001149 5.4e-11 71.6 160 35.0
TAR623G0060 Trochodendron aralioides HOM05D000108 ORTHO05D001149 7.0e-11 71.2 128 37.5
Sopen10g035720 Solanum pennellii HOM05D000108 ORTHO05D001149 9.2e-11 70.9 136 35.3
RcHm_v2.0_Chr3g0467551 Rosa chinensis HOM05D000108 ORTHO05D001149 1.2e-10 70.5 145 36.6
Lalb_Chr02g0153221 Lupinus albus HOM05D000108 ORTHO05D001149 1.6e-10 70.1 120 35.0
PGSC0003DMG400019214 Solanum tuberosum HOM05D000108 ORTHO05D001149 1.6e-10 70.1 146 33.6
CAN.G501.10 Capsicum annuum HOM05D000108 ORTHO05D001149 2.7e-10 69.3 146 32.9
Cc06_g03060 Coffea canephora HOM05D000108 ORTHO05D001149 2.7e-10 69.3 155 31.6
DCAR_009257 Daucus carota HOM05D000108 ORTHO05D001149 4.5e-10 68.6 123 39.8
FvH4_6g14420 Fragaria vesca HOM05D000108 ORTHO05D001149 4.5e-10 68.6 148 37.8
Lju41C55G1 Lonicera japonica HOM05D000108 ORTHO05D001149 4.5e-10 68.6 164 34.1
MD04G1119500 Malus domestica HOM05D000108 ORTHO05D001149 5.9e-10 68.2 147 37.4
Rhsim05G0187400 Rhododendron simsii HOM05D000108 ORTHO05D001149 1.0e-09 67.4 147 34.7
FAN05G0640 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.3e-09 67.0 148 36.5
FAN09G1966 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.3e-09 67.0 148 37.2
FAN02G2463 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.7e-09 66.6 144 36.8
vmacro20116 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 2.3e-09 66.2 147 31.3
Nn2g10475 Nelumbo nucifera HOM05D000108 ORTHO05D001149 3.8e-09 65.5 126 34.1
Peaxi162Scf00407g00069 Petunia axillaris HOM05D000108 ORTHO05D001149 3.8e-09 65.5 147 30.6
HanXRQChr01g0026581 Helianthus annuus HOM05D000108 ORTHO05D001149 5.0e-09 65.1 130 38.5
arahy.Tifrunner.gnm1.ann1.V9SGYL Arachis hypogaea HOM05D000108 ORTHO05D001149 8.6e-09 64.3 121 37.2
arahy.Tifrunner.gnm1.ann1.V43IMF Arachis hypogaea HOM05D000108 ORTHO05D001149 4.3e-08 62.0 118 33.9
Sc01g0003930 Simmondsia chinensis HOM05D000108 ORTHO05D001149 2.1e-07 59.7 122 35.2
Aqoxy2G02005 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 3.6e-07 58.9 124 31.5
ECA248G3979 Erigeron canadensis HOM05D000108 ORTHO05D001149 6.1e-07 58.2 129 35.7
ATR1152G079 Amborella trichopoda HOM05D000108 ORTHO05D001149 8.9e-06 54.3 150 28.7
Lsat_1_v5_gn_1_55921 Lactuca sativa HOM05D000108 ORTHO05D001149 8.9e-06 54.3 146 31.5


User provided reference genes

Program Settings