Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21473 Brassica carinata HOM05D002825 ORTHO05D021407 6.2e-74 281.2 197 100.0
C09p31380 Brassica napus HOM05D002825 ORTHO05D021407 6.2e-74 281.2 197 100.0
C06p27800 Brassica napus HOM05D000647 ORTHO05D011549 1.6e-61 240.0 186 95.2
BolC6t37947H Brassica oleracea HOM05D000647 ORTHO05D011549 1.6e-61 240.0 186 95.2
BcaC08g45156 Brassica carinata HOM05D002825 ORTHO05D021407 3.0e-52 209.1 186 60.2
BcaB02g07363 Brassica carinata HOM05D002825 ORTHO05D021407 8.7e-52 207.6 118 87.3
BolC9t55996H Brassica oleracea HOM05D002825 ORTHO05D021407 1.1e-43 180.6 151 98.0
AT3G60960 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 1.1e-38 164.1 122 68.9
AL5G43680 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 5.5e-38 161.8 122 68.9
AL5G43820 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.2e-37 160.6 122 67.2
AL5G44780 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 2.7e-37 159.5 122 66.4
Carub.0201s0002 Capsella rubella HOM05D002825 ORTHO05D011549 5.1e-36 155.2 124 69.4
AL5G44690 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 3.3e-35 152.5 122 63.9
Carub.0005s2842 Capsella rubella HOM05D002825 ORTHO05D011549 5.9e-32 141.7 124 62.1
Carub.0006s2575 Capsella rubella HOM05D002825 ORTHO05D011549 2.4e-25 119.8 122 56.6
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 3.9e-20 102.4 107 48.6
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 3.9e-20 102.4 112 50.9
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 4.4e-19 99.0 117 47.0
Thhalv10023949m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 4.4e-19 99.0 111 50.5
A05p00840 Brassica napus HOM05D002825 ORTHO05D011549 1.7e-18 97.1 107 45.8
A05p25940 Brassica napus HOM05D002825 ORTHO05D011549 1.7e-18 97.1 116 45.7
BraA05t19087Z Brassica rapa HOM05D002825 ORTHO05D011549 1.7e-18 97.1 107 45.8
BcaC02g12622 Brassica carinata HOM05D002825 ORTHO05D011549 2.8e-18 96.3 107 45.8
BolC4t21754H Brassica oleracea HOM05D002825 ORTHO05D011549 2.8e-18 96.3 107 45.8
BcaC02g12824 Brassica carinata HOM05D002825 ORTHO05D011549 3.7e-18 95.9 107 45.8
AL73U10010 Arabidopsis lyrata HOM05D002825 ORTHO05D021407 1.4e-17 94.0 86 59.3
BcaB02g09551 Brassica carinata HOM05D002825 ORTHO05D011549 1.4e-17 94.0 103 47.6
BolC4t21716H Brassica oleracea HOM05D002825 ORTHO05D011549 4.1e-17 92.4 105 46.7
BcaC02g12609 Brassica carinata HOM05D002825 ORTHO05D011549 7.0e-17 91.7 105 46.7
BolC4t21737H Brassica oleracea HOM05D002825 ORTHO05D011549 7.0e-17 91.7 105 46.7
BcaC02g12597 Brassica carinata HOM05D002825 ORTHO05D011549 2.6e-16 89.7 78 53.8
AL5G29530 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 4.5e-16 89.0 83 57.8
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 1.3e-15 87.4 117 41.9
CARHR265210 Cardamine hirsuta HOM05D002825 ORTHO05D011549 6.1e-13 78.6 116 44.0
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 8.8e-12 74.7 115 36.5
AL3G34230 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.5e-11 73.9 98 44.9
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 4.4e-11 72.4 102 42.2
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 7.4e-11 71.6 108 40.7
AL5G42780 Arabidopsis lyrata HOM05D002825 ORTHO05D023647 2.8e-10 69.7 120 35.0
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 4.8e-10 68.9 103 38.8
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 8.2e-10 68.2 103 35.9
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 8.2e-10 68.2 66 54.5
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 1.1e-09 67.8 76 43.4
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 1.1e-09 67.8 103 38.8
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 1.4e-09 67.4 104 41.3
MD08G1246600 Malus domestica HOM05D002825 ORTHO05D003824 1.4e-09 67.4 76 42.1
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 2.4e-09 66.6 106 36.8
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 2.4e-09 66.6 76 43.4
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 2.4e-09 66.6 101 37.6
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 2.4e-09 66.6 76 43.4
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 2.4e-09 66.6 101 37.6
Carub.0005s2723 Capsella rubella HOM05D002825 ORTHO05D023647 3.1e-09 66.2 113 37.2
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 4.1e-09 65.9 102 40.2
Prupe.1G583600 Prunus persica HOM05D002825 ORTHO05D003824 4.1e-09 65.9 101 36.6
Ah.11g046920 Amaranthus hybridus HOM05D002825 ORTHO05D003824 5.3e-09 65.5 105 36.2
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 5.3e-09 65.5 105 41.0
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 5.3e-09 65.5 103 37.9
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 7.0e-09 65.1 102 37.3
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 7.0e-09 65.1 102 37.3
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 7.0e-09 65.1 76 42.1
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 7.0e-09 65.1 102 39.2
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 7.0e-09 65.1 102 35.3
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 7.0e-09 65.1 76 42.1
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.1e-09 64.7 117 34.2
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 9.1e-09 64.7 102 37.3
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 9.1e-09 64.7 102 37.3
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 9.1e-09 64.7 103 35.0
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 9.1e-09 64.7 103 37.9
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 9.1e-09 64.7 105 36.2
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 9.1e-09 64.7 105 36.2
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 9.1e-09 64.7 76 42.1
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.2e-08 64.3 72 44.4
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 1.2e-08 64.3 102 39.2
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 1.2e-08 64.3 105 37.1
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 1.2e-08 64.3 105 37.1
Haze_10006 Corylus avellana HOM05D002825 ORTHO05D003824 1.2e-08 64.3 103 35.0
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.2e-08 64.3 105 35.2
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.2e-08 64.3 105 35.2
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 1.2e-08 64.3 76 40.8
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 1.2e-08 64.3 76 40.8
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 1.6e-08 63.9 102 38.2
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 1.6e-08 63.9 102 38.2
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 1.6e-08 63.9 102 38.2
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.6e-08 63.9 96 36.5
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 1.6e-08 63.9 102 39.2
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 1.6e-08 63.9 103 37.9
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 1.6e-08 63.9 76 40.8
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 1.6e-08 63.9 103 35.9
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 2.0e-08 63.5 102 36.3
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 2.0e-08 63.5 106 35.8
A03p50090 Brassica napus HOM05D049293 ORTHO05D042626 2.0e-08 63.5 68 51.5
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 2.0e-08 63.5 102 39.2
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 2.0e-08 63.5 102 39.2
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 2.6e-08 63.2 74 43.2
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 2.6e-08 63.2 101 36.6
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 2.6e-08 63.2 76 40.8
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 3.5e-08 62.8 106 37.7
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 3.5e-08 62.8 106 37.7
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 3.5e-08 62.8 102 37.3
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 3.5e-08 62.8 106 37.7
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 3.5e-08 62.8 76 40.8
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 3.5e-08 62.8 101 35.6
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 3.5e-08 62.8 101 36.6
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 3.5e-08 62.8 113 38.1
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 4.5e-08 62.4 105 34.3
Sc19g0003420 Simmondsia chinensis HOM05D002825 ORTHO05D003824 4.5e-08 62.4 76 42.1
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 5.9e-08 62.0 76 39.5
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 7.7e-08 61.6 76 39.5
CARHR170900 Cardamine hirsuta HOM05D002825 ORTHO05D023647 7.7e-08 61.6 118 34.7
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 7.7e-08 61.6 76 39.5
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 1.7e-07 60.5 94 38.3
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 1.7e-07 60.5 99 39.4
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 1.7e-07 60.5 75 38.7
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 1.7e-07 60.5 76 36.8
HanXRQChr06g0180791 Helianthus annuus HOM05D002825 ORTHO05D003824 1.7e-07 60.5 94 40.4
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 1.7e-07 60.5 76 40.8
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 1.7e-07 60.5 73 41.1
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 2.2e-07 60.1 73 41.1
THA.LOC104823676 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 2.2e-07 60.1 73 41.1
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 2.9e-07 59.7 73 41.1
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 3.8e-07 59.3 77 40.3
Sp1g08860 Schrenkiella parvula HOM05D002825 ORTHO05D003824 3.8e-07 59.3 98 38.8
AL7G38410 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.0e-07 58.9 105 33.3
Carub.0004s2841 Capsella rubella HOM05D002825 ORTHO05D003824 6.5e-07 58.5 95 33.7
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 6.5e-07 58.5 76 36.8
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 8.5e-07 58.2 109 37.6
SGA_v2.0_scaffold100G29546 Striga asiatica HOM05D002825 ORTHO05D003824 8.5e-07 58.2 76 38.2
BcaNung04659 Brassica carinata HOM05D002825 ORTHO05D003824 1.1e-06 57.8 101 38.6
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 1.1e-06 57.8 68 42.6
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 1.1e-06 57.8 68 42.6
PSO339G5268 Papaver somniferum HOM05D002825 ORTHO05D003824 1.1e-06 57.8 109 31.2
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 1.5e-06 57.4 68 42.6
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 1.9e-06 57.0 98 37.8
AL1G21000 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.9e-06 57.0 68 44.1
AT1G10270 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 1.9e-06 57.0 68 44.1
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 2.5e-06 56.6 68 44.1
TWI63G1692 Tripterygium wilfordii HOM05D002825 ORTHO05D003824 2.5e-06 56.6 68 42.6
MSTRG.5190 Avicennia marina HOM05D002825 ORTHO05D003824 3.2e-06 56.2 111 32.4
CARHR170480 Cardamine hirsuta HOM05D002825 ORTHO05D023647 3.2e-06 56.2 110 36.4
Migut.N00859 Erythranthe guttata HOM05D002825 ORTHO05D003824 3.2e-06 56.2 106 32.1
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 5.5e-06 55.5 68 42.6
PSO384G0639 Papaver somniferum HOM05D002825 ORTHO05D003824 5.5e-06 55.5 109 31.2
HPP92_001276 Vanilla planifolia HOM05D002825 ORTHO05D003824 5.5e-06 55.5 98 32.7
Medtr7g069290 Medicago truncatula HOM05D002825 ORTHO05D003824 7.2e-06 55.1 77 39.0
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 9.4e-06 54.7 76 34.2


User provided reference genes

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