Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 7.2e-198 693.7 356 100.0
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 4.7e-181 637.9 337 96.7
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 7.4e-134 481.1 296 88.2
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 5.3e-132 474.9 327 79.5
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 1.7e-130 469.9 284 89.1
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 9.0e-124 447.6 266 87.2
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 2.5e-121 439.5 264 88.3
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 2.7e-120 436.0 267 85.8
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.8e-119 433.3 267 85.0
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 6.7e-119 431.4 267 85.0
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 5.3e-116 421.8 266 84.2
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 1.3e-114 417.2 269 82.9
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 1.9e-113 413.3 265 81.5
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.9e-113 413.3 263 82.1
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 3.2e-113 412.5 263 82.1
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 5.5e-113 411.8 269 81.8
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 1.2e-112 410.6 268 81.7
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 3.0e-111 406.0 265 81.9
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 4.5e-107 392.1 238 88.2
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 2.4e-100 369.8 261 73.6
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 1.8e-95 353.6 248 73.4
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.1e-94 350.9 269 68.4
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 2.6e-94 349.7 248 72.2
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 3.3e-94 349.4 248 73.0
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 7.5e-94 348.2 252 71.8
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.3e-93 347.4 245 73.9
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 1.3e-93 347.4 256 69.1
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 1.7e-93 347.1 287 65.9
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 4.8e-93 345.5 245 73.5
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 8.2e-93 344.7 249 73.1
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 1.8e-92 343.6 246 71.5
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 4.1e-92 342.4 273 67.8
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 4.1e-92 342.4 223 77.6
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 2.0e-91 340.1 299 64.2
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 2.7e-91 339.7 245 71.8
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 3.5e-91 339.3 245 70.2
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 4.5e-91 339.0 253 70.8
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 1.3e-90 337.4 245 70.2
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 2.9e-90 336.3 249 70.3
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.8e-90 335.9 241 71.4
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 5.0e-90 335.5 270 65.2
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 1.5e-89 334.0 245 69.4
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 1.5e-89 334.0 269 65.1
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 2.5e-89 333.2 256 68.4
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.2e-89 332.8 243 69.5
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.2e-89 332.8 296 61.5
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 4.2e-89 332.4 300 61.0
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 5.5e-89 332.0 271 64.9
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 7.2e-89 331.6 295 62.7
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 7.2e-89 331.6 252 67.5
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 9.4e-89 331.3 274 63.1
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 9.4e-89 331.3 269 64.7
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 9.4e-89 331.3 249 69.5
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.6e-88 330.5 249 67.5
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 3.6e-88 329.3 315 58.4
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 3.6e-88 329.3 269 63.9
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 4.7e-88 328.9 246 69.1
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 6.1e-88 328.6 249 68.7
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 6.8e-87 325.1 260 65.0
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.5e-86 323.9 265 63.4
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 7.5e-86 321.6 250 66.8
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 9.8e-86 321.2 240 70.0
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.3e-85 320.9 308 59.1
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 1.7e-85 320.5 205 77.6
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 2.2e-85 320.1 223 72.6
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 3.7e-85 319.3 259 64.9
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 4.8e-85 318.9 265 63.0
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 8.3e-85 318.2 236 69.1
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.1e-84 317.8 252 65.5
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 3.1e-84 316.2 226 71.7
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 9.1e-84 314.7 237 70.0
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 9.1e-84 314.7 225 73.3
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 7.7e-83 311.6 293 59.0
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 1.0e-82 311.2 232 69.8
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 1.0e-82 311.2 343 53.9
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 1.3e-82 310.8 230 70.0
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 1.7e-82 310.5 252 65.9
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.2e-82 310.1 230 69.6
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 5.0e-82 308.9 251 63.7
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 6.5e-82 308.5 248 65.7
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 3.2e-81 306.2 281 59.8
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 5.5e-81 305.4 208 73.6
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.6e-80 303.9 226 69.9
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 2.1e-80 303.5 223 69.1
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 2.7e-80 303.1 270 60.4
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 4.7e-80 302.4 253 63.6
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 1.4e-79 300.8 193 78.2
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.3e-79 300.1 195 76.4
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 2.3e-79 300.1 234 68.8
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 5.2e-79 298.9 248 63.7
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.2e-78 297.7 238 66.8
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.2e-78 297.7 255 62.4
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.5e-78 297.4 304 57.6
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.0e-78 297.0 203 75.4
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 3.4e-78 296.2 199 74.4
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 4.9e-77 292.4 202 72.8
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.4e-76 290.8 248 62.9
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 2.4e-76 290.0 237 64.1
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 4.1e-76 289.3 294 53.7
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 2.5e-73 280.0 250 61.2
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 3.3e-73 279.6 195 74.4
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 3.0e-71 273.1 261 56.7
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.2e-67 261.2 247 55.5
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.3e-66 256.9 192 65.1
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 8.0e-64 248.4 198 64.6
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 3.4e-62 243.0 204 58.3
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.2e-59 234.6 200 57.5
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 1.0e-58 231.5 212 55.2
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 2.3e-58 230.3 209 55.5
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 2.0e-54 217.2 194 56.7
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.9e-53 213.4 172 63.4
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 7.8e-51 205.3 148 70.9
BcaC04g21521 Brassica carinata HOM05D006025 ORTHO05D015942 1.0e-34 151.8 85 89.4
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 5.6e-33 146.0 110 65.5
A09p23910 Brassica napus HOM05D006025 ORTHO05D015942 7.3e-33 145.6 85 85.9
BraA09t37995Z Brassica rapa HOM05D006025 ORTHO05D015942 6.2e-32 142.5 85 84.7
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 8.1e-32 142.1 192 44.8
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 6.4e-29 132.5 136 55.9
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 9.3e-28 128.6 175 45.1
BcaB07g30698 Brassica carinata HOM05D006025 ORTHO05D015942 8.1e-24 115.5 85 70.6
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.2e-19 101.7 74 70.3
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 7.9e-19 99.0 74 66.2
Thhalv10005343m.g Eutrema salsugineum HOM05D006025 ORTHO05D015942 5.3e-15 86.3 89 61.8
AT2G02515 Arabidopsis thaliana HOM05D006025 ORTHO05D015942 2.6e-14 84.0 85 60.0
Sp2g13740 Schrenkiella parvula HOM05D006025 ORTHO05D015942 3.8e-13 80.1 80 63.8
Thhalv10005501m.g Eutrema salsugineum HOM05D006025 ORTHO05D015942 4.9e-13 79.7 90 53.3
AL5G11790 Arabidopsis lyrata HOM05D006025 ORTHO05D015942 2.1e-11 74.3 83 57.8
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 6.7e-10 69.3 56 67.9
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 8.7e-10 68.9 50 66.0
CARHR145050 Cardamine hirsuta HOM05D006025 ORTHO05D015942 1.5e-09 68.2 82 56.1
Sp2g13720 Schrenkiella parvula HOM05D006025 ORTHO05D015942 2.8e-08 63.9 100 48.0
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 6.9e-07 59.3 118 39.8
AL3G48390 Arabidopsis lyrata HOM05D024802 ORTHO05D026830 7.6e-06 55.8 71 53.5


User provided reference genes

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