Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 9.2e-53 209.9 103 100.0
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 9.2e-53 209.9 103 100.0
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 9.2e-53 209.9 103 100.0
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 9.2e-53 209.9 103 100.0
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 9.2e-53 209.9 103 100.0
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 9.2e-53 209.9 103 100.0
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 2.0e-52 208.8 103 99.0
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 7.8e-52 206.8 103 98.1
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 7.8e-52 206.8 103 98.1
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 7.8e-52 206.8 103 98.1
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 7.8e-52 206.8 103 98.1
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-51 205.7 103 98.1
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 1.7e-51 205.7 103 98.1
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 1.7e-51 205.7 103 98.1
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 5.0e-51 204.1 103 97.1
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 8.6e-51 203.4 104 98.1
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 2.8e-49 198.4 103 94.2
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 1.4e-48 196.1 103 93.2
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 1.5e-47 192.6 104 93.3
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 1.1e-45 186.4 104 90.4
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 4.6e-44 181.0 92 95.7
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 1.0e-43 179.9 93 93.5
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 1.0e-43 179.9 93 93.5
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.0e-43 179.9 103 86.4
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 3.0e-43 178.3 103 83.5
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 3.9e-43 177.9 103 86.4
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 6.6e-43 177.2 104 84.6
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.5e-42 176.0 103 86.4
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 3.3e-42 174.9 103 84.5
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 3.3e-42 174.9 103 82.5
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 3.3e-42 174.9 105 83.8
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 3.3e-42 174.9 103 84.5
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.3e-42 174.9 104 82.7
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 4.3e-42 174.5 103 84.5
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 5.6e-42 174.1 103 83.5
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 7.3e-42 173.7 103 83.5
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 7.3e-42 173.7 103 83.5
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 1.6e-41 172.6 103 82.5
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 1.6e-41 172.6 102 82.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 82.5
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 84.5
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 83.5
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 2.1e-41 172.2 103 83.5
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.8e-41 171.8 103 84.5
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.8e-41 171.8 103 84.5
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 4.7e-41 171.0 103 81.6
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 6.2e-41 170.6 102 81.4
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 6.2e-41 170.6 103 82.5
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 6.2e-41 170.6 103 83.5
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 6.2e-41 170.6 103 81.6
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 8.0e-41 170.2 103 81.6
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.1e-40 169.9 103 83.5
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.4e-40 169.5 103 83.5
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 1.4e-40 169.5 103 79.6
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 1.8e-40 169.1 103 79.6
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 2.3e-40 168.7 103 82.5
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.3e-40 168.7 105 80.0
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 4.0e-40 167.9 103 80.6
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 5.2e-40 167.5 103 82.5
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 5.2e-40 167.5 104 79.8
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 6.8e-40 167.2 105 79.0
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 8.9e-40 166.8 103 80.6
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 8.9e-40 166.8 103 77.7
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 1.2e-39 166.4 103 79.6
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.2e-39 166.4 104 78.8
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 1.5e-39 166.0 103 78.6
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 1.5e-39 166.0 103 77.7
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 1.5e-39 166.0 103 77.7
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 1.5e-39 166.0 103 80.6
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 2.0e-39 165.6 103 79.6
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 2.6e-39 165.2 103 80.6
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 2.6e-39 165.2 103 81.6
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 4.4e-39 164.5 102 79.4
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 5.8e-39 164.1 103 78.6
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 7.5e-39 163.7 103 75.7
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 7.5e-39 163.7 106 79.2
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.7e-38 162.5 103 80.6
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.7e-38 162.5 107 78.5
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 2.2e-38 162.2 102 80.4
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 2.2e-38 162.2 105 77.1
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.9e-38 161.8 102 79.4
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 2.9e-38 161.8 102 79.4
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 2.9e-38 161.8 107 78.5
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 2.9e-38 161.8 103 78.6
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 3.7e-38 161.4 103 77.7
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.7e-38 161.4 103 78.6
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 4.9e-38 161.0 102 79.4
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 4.9e-38 161.0 103 74.8
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 4.9e-38 161.0 103 75.7
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 6.4e-38 160.6 103 75.7
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 6.4e-38 160.6 99 81.8
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 1.4e-37 159.5 103 77.7
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 1.9e-37 159.1 100 76.0
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 1.9e-37 159.1 103 76.7
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 3.2e-37 158.3 103 76.7
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 3.2e-37 158.3 103 74.8
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 1.6e-36 156.0 103 75.7
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 1.6e-36 156.0 103 75.7
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 3.5e-36 154.8 103 75.7
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.0e-35 153.3 106 71.7
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.0e-35 153.3 106 71.7
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 1.3e-35 152.9 106 71.7
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.3e-35 152.9 106 71.7
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 3.0e-35 151.8 106 70.8
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 3.0e-35 151.8 100 76.0
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 3.9e-35 151.4 103 73.8
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 8.6e-35 150.2 102 73.5
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 3.3e-34 148.3 94 79.8
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 4.3e-34 147.9 94 76.6
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 1.6e-33 146.0 87 80.5
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 2.1e-33 145.6 98 74.5
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 3.6e-33 144.8 103 70.9
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.4e-32 142.9 94 74.5
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.1e-32 141.7 73 90.4
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 6.8e-32 140.6 104 69.2
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 4.4e-31 137.9 97 71.1
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 9.9e-31 136.7 96 69.8
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 2.4e-29 132.1 69 87.0
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 4.1e-29 131.3 74 79.7
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 1.3e-27 126.3 83 73.5
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 6.6e-27 124.0 73 78.1
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 4.0e-24 114.8 89 71.9
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 8.9e-24 113.6 86 66.3
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 2.6e-23 112.1 68 82.4
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 2.6e-23 112.1 68 82.4
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 9.9e-23 110.2 78 64.1
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.3e-22 109.8 75 65.3
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 2.2e-22 109.0 70 68.6
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 2.3e-19 99.0 56 82.1
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 1.1e-18 96.7 64 64.1
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 3.3e-18 95.1 103 54.4
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 2.1e-17 92.4 80 51.2
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 1.8e-16 89.4 55 67.3
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.5e-15 86.3 65 55.4
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 8.4e-14 80.5 104 50.0
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 1.6e-09 66.2 67 50.7
Cre06.g278188 Chlamydomonas reinhardtii HOM05D005547 ORTHO05D006887 4.5e-07 58.2 63 49.2


User provided reference genes

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