Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.2e-178 628.2 305 100.0
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 2.4e-173 612.1 305 97.7
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.5e-130 469.2 248 92.7
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.6e-129 466.5 258 87.6
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 2.7e-129 465.7 258 86.8
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.5e-127 459.9 262 84.0
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 2.8e-126 455.7 262 85.1
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 2.8e-126 455.7 262 85.1
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 3.7e-126 455.3 262 85.1
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 4.8e-126 454.9 262 84.7
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 4.8e-126 454.9 262 84.7
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.4e-125 453.4 258 84.9
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.6e-124 449.9 262 83.6
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.0e-124 449.5 262 82.4
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 3.5e-124 448.7 262 84.0
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 4.0e-120 435.3 270 78.5
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 7.0e-117 424.5 258 77.9
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 4.7e-113 411.8 251 74.1
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 8.0e-113 411.0 268 71.3
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.2e-111 407.1 251 72.9
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 5.7e-111 404.8 251 74.1
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 5.7e-111 404.8 251 74.1
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 4.9e-110 401.7 251 72.5
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.1e-109 400.6 251 71.3
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.4e-109 400.2 251 71.7
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.8e-109 399.8 251 71.7
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 7.0e-109 397.9 251 71.3
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.0e-108 396.4 258 72.1
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 2.0e-108 396.4 251 71.7
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 2.0e-108 396.4 251 71.7
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.7e-108 396.0 251 72.5
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 3.5e-108 395.6 251 71.7
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.0e-107 394.0 251 70.1
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.0e-107 392.5 251 69.7
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 3.9e-107 392.1 258 70.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 3.9e-107 392.1 251 70.9
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 5.0e-107 391.7 251 71.3
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 5.0e-107 391.7 251 72.5
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 5.0e-107 391.7 251 70.5
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 6.6e-107 391.3 251 70.9
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 8.6e-107 391.0 251 70.1
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-106 390.2 251 70.5
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.9e-106 389.8 251 69.3
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 2.5e-106 389.4 251 68.5
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.3e-106 389.0 264 67.4
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 5.6e-106 388.3 262 70.6
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.5e-106 387.5 279 64.5
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 9.5e-106 387.5 251 70.1
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.2e-105 387.1 251 71.7
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.6e-105 386.7 251 68.9
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.6e-105 386.7 251 71.3
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.6e-105 386.7 251 69.7
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.6e-105 386.7 251 70.1
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-105 386.7 251 70.1
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.1e-105 386.3 251 70.1
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.1e-105 386.3 251 69.7
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 2.1e-105 386.3 239 72.8
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 2.1e-105 386.3 251 71.7
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.8e-105 386.0 251 69.7
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 4.7e-105 385.2 251 71.3
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 6.2e-105 384.8 251 70.9
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 6.2e-105 384.8 262 69.8
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 6.2e-105 384.8 251 69.7
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 8.0e-105 384.4 247 72.1
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.0e-104 384.0 251 69.3
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.0e-104 384.0 251 70.9
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.0e-104 384.0 258 70.2
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.0e-104 384.0 251 69.7
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.4e-104 383.6 251 69.7
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.3e-104 382.9 247 71.7
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 8.9e-104 380.9 247 70.9
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 8.9e-104 380.9 251 70.9
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 4.4e-103 378.6 251 69.3
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 5.8e-103 378.3 251 68.9
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 7.5e-103 377.9 251 68.5
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 9.8e-103 377.5 251 68.9
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 9.8e-103 377.5 251 68.5
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 9.8e-103 377.5 254 68.5
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.7e-102 376.7 258 67.8
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 2.2e-102 376.3 258 67.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.9e-102 375.9 259 67.6
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.1e-101 374.0 251 68.5
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.4e-101 373.6 248 69.4
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 2.7e-100 369.4 251 66.9
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 6.0e-100 368.2 248 67.7
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 8.6e-99 364.4 251 67.7
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.5e-98 362.8 258 64.7
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 3.3e-98 362.5 251 65.3
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.1e-97 359.8 247 68.0
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 4.7e-97 358.6 251 66.5
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 8.1e-97 357.8 258 65.9
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.1e-96 357.5 282 62.1
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 6.8e-96 354.8 280 61.1
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 6.8e-96 354.8 251 66.5
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 2.0e-95 353.2 251 64.5
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 2.2e-94 349.7 254 62.6
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.7e-94 349.0 258 63.2
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.7e-94 349.0 258 63.2
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.1e-93 347.4 218 73.4
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.9e-93 346.7 249 63.9
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 7.8e-92 341.3 249 62.7
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 2.5e-90 336.3 265 59.6
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 7.3e-90 334.7 258 61.6
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 2.8e-89 332.8 218 70.6
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 3.8e-86 322.4 252 69.8
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.9e-85 320.1 190 73.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.0e-83 314.3 248 58.9
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 3.0e-83 312.8 254 58.3
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 4.0e-80 302.4 249 67.5
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 3.4e-79 299.3 253 55.7
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 6.4e-78 295.0 254 55.5
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 2.4e-77 293.1 265 55.1
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 8.1e-73 278.1 167 70.7
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 5.3e-72 275.4 167 70.1
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.2e-70 270.0 166 69.9
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 5.4e-69 265.4 170 67.1
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.2e-68 264.2 393 39.4
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 7.9e-68 261.5 405 38.8
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 2.0e-63 246.9 253 46.2
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 7.6e-63 245.0 135 77.0
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 3.0e-59 233.0 267 45.3
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.1e-58 231.1 159 65.4
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 4.0e-56 222.6 217 51.2
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 1.1e-50 204.5 260 43.5
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 7.4e-50 201.8 146 58.2
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 8.2e-49 198.4 135 68.9
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.1e-40 171.4 98 74.5
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 9.1e-40 168.3 228 39.5
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.9e-37 160.6 121 64.5
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 2.5e-37 160.2 113 71.7
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 4.7e-28 129.4 75 72.0
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 2.0e-26 124.0 71 69.0
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 2.0e-26 124.0 71 69.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 3.7e-25 119.8 71 69.0
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.7e-23 112.1 75 72.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.0e-22 111.7 76 71.1
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 3.8e-22 109.8 80 65.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 3.2e-21 106.7 92 57.6
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.1e-12 77.4 52 63.5
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.1e-12 77.4 85 49.4
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.7e-09 67.8 169 29.6
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.1e-08 63.2 87 48.3
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 7.0e-08 62.4 55 58.2


User provided reference genes

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