Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 9.5e-20 99.0 43 100.0
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.1e-19 97.8 43 97.7
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-18 95.5 43 97.7
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.1e-18 95.5 43 95.3
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.8e-18 94.7 43 93.0
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 1.8e-18 94.7 43 93.0
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 1.8e-18 94.7 43 93.0
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 2.3e-18 94.4 43 93.0
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-18 94.0 43 95.3
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-18 93.6 43 93.0
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 93.0
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 5.2e-18 93.2 40 100.0
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 90.7
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 90.7
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 90.7
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 90.7
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 93.0
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 90.7
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 5.2e-18 93.2 43 90.7
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 6.8e-18 92.8 42 92.9
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 6.8e-18 92.8 43 90.7
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 6.8e-18 92.8 43 90.7
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 6.8e-18 92.8 43 90.7
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.2e-17 92.0 43 90.7
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 2.0e-17 91.3 43 88.4
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-17 90.9 43 90.7
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-17 90.9 43 90.7
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 4.4e-17 90.1 43 88.4
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.4e-17 90.1 43 88.4
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 4.4e-17 90.1 43 88.4
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 5.8e-17 89.7 38 100.0
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.8e-17 89.7 43 88.4
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 5.8e-17 89.7 43 88.4
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 7.5e-17 89.4 43 90.7
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 1.3e-16 88.6 43 88.4
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.9e-16 86.7 43 86.0
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 6.4e-16 86.3 43 86.0
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 8.3e-16 85.9 42 83.3
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.4e-15 85.1 43 83.7
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.1e-15 83.6 43 81.4
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.1e-15 83.6 43 81.4
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 4.1e-15 83.6 43 83.7
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.1e-14 81.3 43 79.1
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 3.5e-14 80.5 41 87.8
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.9e-13 77.0 43 79.1
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 1.2e-11 72.0 43 76.7
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.6e-11 71.6 33 93.9
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-10 68.9 41 68.3
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-10 68.9 41 68.3
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-10 68.9 41 68.3
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 3.4e-09 63.9 28 89.3
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 7.6e-09 62.8 35 71.4
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 9.9e-09 62.4 31 87.1
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 3.7e-08 60.5 26 92.3
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.7e-08 60.5 30 80.0
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.1e-07 57.0 34 79.4
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.2e-06 55.5 27 85.2
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-06 55.1 24 95.8
BolSC35t60757H Brassica oleracea HOM05D001033 ORTHO05D004888 2.1e-06 54.7 23 100.0


User provided reference genes

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