Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 4.1e-79 298.1 165 100.0
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 2.3e-74 282.3 157 99.4
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 3.7e-72 275.0 158 96.8
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 6.1e-67 257.7 158 84.8
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 1.0e-66 256.9 158 85.4
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 1.4e-66 256.5 160 85.0
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 2.3e-66 255.8 158 84.8
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 1.5e-65 253.1 155 86.5
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 1.3e-64 250.0 157 90.4
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 1.3e-64 250.0 158 88.0
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 1.3e-64 250.0 158 88.0
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 2.4e-63 245.7 158 88.0
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 5.4e-63 244.6 155 87.7
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 2.3e-61 239.2 158 79.7
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 3.9e-61 238.4 158 84.8
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 1.2e-54 216.9 158 75.9
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 1.2e-54 216.9 158 75.9
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 5.0e-53 211.5 155 75.5
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 4.0e-50 201.8 131 78.6
A06p45650 Brassica napus HOM05D008115 ORTHO05D010112 3.2e-39 165.6 105 83.8
BolC9t55752H Brassica oleracea HOM05D008115 ORTHO05D010112 2.5e-36 156.0 80 98.8
BraA09t37861Z Brassica rapa HOM05D008115 ORTHO05D010112 4.4e-33 145.2 160 63.1
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 3.8e-32 142.1 134 60.4
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 1.3e-19 100.5 101 54.5
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 1.1e-18 97.4 135 45.2
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 6.9e-18 94.7 121 49.6
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 9.0e-18 94.4 121 49.6
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 1.5e-17 93.6 113 49.6
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 2.0e-17 93.2 121 48.8
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 3.4e-17 92.4 124 47.6
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 3.4e-17 92.4 124 47.6
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 4.5e-17 92.0 101 51.5
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 1.3e-16 90.5 126 42.9
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 1.3e-16 90.5 121 47.9
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 1.7e-16 90.1 145 42.8
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 2.2e-16 89.7 145 42.8
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 2.9e-16 89.4 145 42.1
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 8.4e-16 87.8 130 43.8
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 1.4e-15 87.0 142 40.1
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 1.4e-15 87.0 128 40.6
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 4.2e-15 85.5 150 42.7
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 7.9e-14 81.3 93 48.4
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 1.0e-13 80.9 123 39.0
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 3.0e-13 79.3 118 41.5
Manes.15G181340 Manihot esculenta HOM05D008115 ORTHO05D010112 5.1e-13 78.6 143 40.6
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 1.1e-12 77.4 130 38.5
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 1.1e-12 77.4 130 38.5
CsaV3_3G049200 Cucumis sativus L. HOM05D008115 ORTHO05D010112 1.9e-12 76.6 89 49.4
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 3.3e-12 75.9 125 36.0
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 1.6e-11 73.6 94 47.9
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 1.6e-11 73.6 117 39.3
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 6.2e-11 71.6 135 39.3
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 1.1e-10 70.9 76 48.7
FvH4_5g22030 Fragaria vesca HOM05D008115 ORTHO05D010112 4.5e-09 65.5 70 58.6
TWI15G1224 Tripterygium wilfordii HOM05D008115 ORTHO05D010112 4.5e-09 65.5 109 41.3
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 1.3e-08 63.9 108 38.0
AUR62018718 Chenopodium quinoa HOM05D008115 ORTHO05D010112 1.7e-08 63.5 122 38.5
MELO3C030366.2 Cucumis melo HOM05D008115 ORTHO05D010112 1.7e-08 63.5 75 48.0
EL10Ac5g12123 Beta vulgaris HOM05D008115 ORTHO05D010112 4.9e-08 62.0 146 31.5
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 4.9e-08 62.0 140 32.9
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 3.2e-07 59.3 126 32.5
Sopen02g017350 Solanum pennellii HOM05D008614 ORTHO05D010420 9.3e-07 57.8 84 35.7
ECA246G5266 Erigeron canadensis HOM05D038245 ORTHO05D010112 1.6e-06 57.0 97 38.1


User provided reference genes

Program Settings