Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p27990 Brassica napus HOM05D000355 ORTHO05D000227 1.0e-50 203.4 120 100.0
A09p21830 Brassica napus HOM05D000355 ORTHO05D000227 5.5e-49 197.6 120 91.7
BcaC04g21754 Brassica carinata HOM05D000355 ORTHO05D000227 2.1e-48 195.7 120 94.2
BolC9t55663H Brassica oleracea HOM05D000355 ORTHO05D000227 6.1e-48 194.1 120 90.8
BraA09t37787Z Brassica rapa HOM05D000355 ORTHO05D000227 2.5e-46 188.7 120 91.7
BcaB07g30878 Brassica carinata HOM05D000355 ORTHO05D000227 3.0e-39 165.2 120 70.8
Sp2g10520 Schrenkiella parvula HOM05D000355 ORTHO05D000227 2.5e-33 145.6 120 64.2
AL8G13040 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 1.4e-31 139.8 121 68.6
AT5G45630 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 3.9e-31 138.3 121 62.0
Thhalv10001226m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 2.6e-30 135.6 120 60.0
CARHR176350 Cardamine hirsuta HOM05D000355 ORTHO05D000227 1.8e-28 129.4 120 58.3
Carub.0008s0238 Capsella rubella HOM05D000355 ORTHO05D000227 5.0e-26 121.3 120 64.2
Aa31LG9G7420 Aethionema arabicum HOM05D000355 ORTHO05D000227 2.7e-19 99.0 124 51.6
Sp7g17700 Schrenkiella parvula HOM05D000355 ORTHO05D000227 5.2e-15 84.7 120 48.3
AL7G35180 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 2.8e-13 79.0 121 44.6
A03p51670 Brassica napus HOM05D000355 ORTHO05D000227 3.7e-13 78.6 122 48.4
BraA03t14256Z Brassica rapa HOM05D000355 ORTHO05D000227 3.7e-13 78.6 122 48.4
Carub.0007s2219 Capsella rubella HOM05D000355 ORTHO05D000227 3.7e-13 78.6 121 42.1
Aa31LG6G1680 Aethionema arabicum HOM05D000355 ORTHO05D000227 6.3e-13 77.8 121 50.4
CARHR225870 Cardamine hirsuta HOM05D000355 ORTHO05D000227 6.3e-13 77.8 123 45.5
AT4G18980 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 8.3e-13 77.4 121 43.8
BraA01t01047Z Brassica rapa HOM05D000355 ORTHO05D000227 8.3e-13 77.4 122 48.4
BcaNung04025 Brassica carinata HOM05D000355 ORTHO05D000227 1.4e-12 76.6 121 42.1
C01p13020 Brassica napus HOM05D000355 ORTHO05D000227 1.4e-12 76.6 122 45.9
BolC1t01277H Brassica oleracea HOM05D000355 ORTHO05D000227 1.4e-12 76.6 122 45.9
ECA236G3768 Erigeron canadensis HOM05D000355 ORTHO05D000227 3.1e-12 75.5 136 41.2
Thhalv10026806m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 7.0e-12 74.3 120 52.5
A01p11000 Brassica napus HOM05D000355 ORTHO05D000227 1.2e-11 73.6 123 50.4
BraA08t33402Z Brassica rapa HOM05D000355 ORTHO05D000227 2.7e-11 72.4 120 44.2
A08p14080 Brassica napus HOM05D000355 ORTHO05D000227 3.5e-11 72.0 120 44.2
BolC4t27837H Brassica oleracea HOM05D000355 ORTHO05D000227 1.0e-10 70.5 148 37.8
Sp4g16600 Schrenkiella parvula HOM05D000355 ORTHO05D000227 1.3e-10 70.1 148 38.5
AT2G34340 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 1.7e-10 69.7 137 35.8
BcaC02g11498 Brassica carinata HOM05D000355 ORTHO05D000227 1.7e-10 69.7 130 39.2
A05p11340 Brassica napus HOM05D000355 ORTHO05D000227 2.3e-10 69.3 129 37.2
BraA05t20083Z Brassica rapa HOM05D000355 ORTHO05D000227 2.9e-10 68.9 129 37.2
C04p14700 Brassica napus HOM05D000355 ORTHO05D000227 5.0e-10 68.2 129 36.4
BolC4t23049H Brassica oleracea HOM05D000355 ORTHO05D000227 5.0e-10 68.2 129 36.4
HanXRQChr04g0113361 Helianthus annuus HOM05D000355 ORTHO05D000227 5.0e-10 68.2 131 39.7
CARHR128400 Cardamine hirsuta HOM05D000355 ORTHO05D000227 6.6e-10 67.8 135 37.8
BcaB02g09559 Brassica carinata HOM05D000355 ORTHO05D000227 8.6e-10 67.4 131 38.9
A04p26300 Brassica napus HOM05D000355 ORTHO05D000227 8.6e-10 67.4 143 37.1
BcaC01g00121 Brassica carinata HOM05D000355 ORTHO05D000227 1.5e-09 66.6 142 40.1
C03p75990 Brassica napus HOM05D000355 ORTHO05D000227 1.5e-09 66.6 142 40.1
BolC3t19852H Brassica oleracea HOM05D000355 ORTHO05D000227 1.5e-09 66.6 142 40.1
THA.LOC104812655 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 1.5e-09 66.6 131 39.7
BcaB03g13870 Brassica carinata HOM05D000355 ORTHO05D000227 1.9e-09 66.2 137 41.6
A08p24990 Brassica napus HOM05D000355 ORTHO05D000227 1.9e-09 66.2 144 38.2
C04p63700 Brassica napus HOM05D000355 ORTHO05D000227 1.9e-09 66.2 143 37.1
BraA08t34454Z Brassica rapa HOM05D000355 ORTHO05D000227 1.9e-09 66.2 144 38.2
Manes.17G062700 Manihot esculenta HOM05D000355 ORTHO05D000227 2.5e-09 65.9 128 37.5
SGA_v2.0_scaffold1G00118 Striga asiatica HOM05D000355 ORTHO05D000227 2.5e-09 65.9 127 38.6
Sed0019223 Sechium edule HOM05D000355 ORTHO05D000227 3.3e-09 65.5 131 38.2
AT1G29640 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 4.2e-09 65.1 144 38.9
BcaB04g18515 Brassica carinata HOM05D000355 ORTHO05D000227 4.2e-09 65.1 118 41.5
AL4G30290 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 5.5e-09 64.7 135 38.5
Lsat_1_v5_gn_4_47760 Lactuca sativa HOM05D000355 ORTHO05D000227 5.5e-09 64.7 130 35.4
Phvul.006G168600 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 5.5e-09 64.7 128 39.1
Aa31LG6G6020 Aethionema arabicum HOM05D000355 ORTHO05D000227 7.2e-09 64.3 152 34.2
Thhalv10009054m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 7.2e-09 64.3 142 41.5
Glyma.13G222600 Glycine max HOM05D000355 ORTHO05D000227 7.2e-09 64.3 125 36.0
TPR.G4475 Trifolium pratense HOM05D000355 ORTHO05D000227 7.2e-09 64.3 127 37.0
CiPaw.09G132200 Carya illinoinensis HOM05D000355 ORTHO05D000227 9.5e-09 63.9 127 37.0
Thhalv10017404m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 9.5e-09 63.9 140 36.4
Oeu021539.1 Olea europaea HOM05D000355 ORTHO05D000227 9.5e-09 63.9 140 35.7
Prupe.4G072000 Prunus persica HOM05D000355 ORTHO05D000227 9.5e-09 63.9 146 33.6
BcaB03g12166 Brassica carinata HOM05D000355 ORTHO05D000227 1.2e-08 63.5 142 39.4
A07p10440 Brassica napus HOM05D000355 ORTHO05D000227 1.2e-08 63.5 140 39.3
C07p16070 Brassica napus HOM05D000355 ORTHO05D000227 1.2e-08 63.5 140 41.4
BolC7t42093H Brassica oleracea HOM05D000355 ORTHO05D000227 1.2e-08 63.5 140 41.4
BraA07t28844Z Brassica rapa HOM05D000355 ORTHO05D000227 1.2e-08 63.5 140 39.3
CARHR028960 Cardamine hirsuta HOM05D000355 ORTHO05D000227 1.2e-08 63.5 142 44.4
Manes.15G116100 Manihot esculenta HOM05D000355 ORTHO05D000227 1.2e-08 63.5 132 36.4
Actinidia16758 Actinidia chinensis HOM05D000355 ORTHO05D000227 2.8e-08 62.4 132 37.1
CSS0021028 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.8e-08 62.4 136 33.8
CSS0041883 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.8e-08 62.4 136 33.8
Cpa.g.sc17.164 Carica papaya HOM05D000355 ORTHO05D000227 2.8e-08 62.4 132 34.1
HanXRQChr17g0563551 Helianthus annuus HOM05D000355 ORTHO05D000227 2.8e-08 62.4 129 34.1
PGR042G3548 Punica granatum HOM05D000355 ORTHO05D000227 2.8e-08 62.4 139 36.0
THA.LOC104820624 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 2.8e-08 62.4 138 43.5
BcaB06g28750 Brassica carinata HOM05D000355 ORTHO05D000227 3.6e-08 62.0 142 36.6
BcaC06g35446 Brassica carinata HOM05D000355 ORTHO05D000227 3.6e-08 62.0 140 40.7
A09p36770 Brassica napus HOM05D000355 ORTHO05D000227 3.6e-08 62.0 139 48.9
BraA09t39193Z Brassica rapa HOM05D000355 ORTHO05D000227 3.6e-08 62.0 139 48.9
Cfa021170 Carpinus fangiana HOM05D000355 ORTHO05D000227 3.6e-08 62.0 133 36.8
Migut.H01394 Erythranthe guttata HOM05D000355 ORTHO05D000227 3.6e-08 62.0 131 35.9
Gohir.D05G154500 Gossypium hirsutum HOM05D000355 ORTHO05D000227 3.6e-08 62.0 133 36.1
MBI06_g14253_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 3.6e-08 62.0 128 36.7
C07p16080 Brassica napus HOM05D000355 ORTHO05D000227 4.7e-08 61.6 140 40.7
Sabra11G0064000 Salix brachista HOM05D000355 ORTHO05D000227 4.7e-08 61.6 130 35.4
BcaB04g18514 Brassica carinata HOM05D000355 ORTHO05D000227 6.1e-08 61.2 116 40.5
BcaC05g26984 Brassica carinata HOM05D000355 ORTHO05D000227 6.1e-08 61.2 139 46.8
C05p28450 Brassica napus HOM05D000355 ORTHO05D000227 6.1e-08 61.2 139 46.8
BolC5t31570H Brassica oleracea HOM05D000355 ORTHO05D000227 6.1e-08 61.2 139 46.8
CiPaw.10G098200 Carya illinoinensis HOM05D000355 ORTHO05D000227 6.1e-08 61.2 130 33.8
Peaxi162Scf00308g00051 Petunia axillaris HOM05D000355 ORTHO05D000227 6.1e-08 61.2 136 36.8
TWI09G0139 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 6.1e-08 61.2 141 34.8
AL1G43470 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 8.0e-08 60.8 141 36.9
Psat1g192560 Pisum sativum HOM05D000355 ORTHO05D000227 8.0e-08 60.8 137 35.8
Ca_00498_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 1.0e-07 60.5 138 32.6
BcaC01g00587 Brassica carinata HOM05D000355 ORTHO05D000227 1.4e-07 60.1 118 44.1
C03p81660 Brassica napus HOM05D000355 ORTHO05D000227 1.4e-07 60.1 118 44.1
BolC3t20436H Brassica oleracea HOM05D000355 ORTHO05D000227 1.4e-07 60.1 118 44.1
Gohir.A05G152000 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.8e-07 59.7 133 38.3
Gohir.A06G198400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.8e-07 59.7 125 36.0
Gorai.009G158800 Gossypium raimondii HOM05D000355 ORTHO05D000227 2.3e-07 59.3 133 35.3
Lsat_1_v5_gn_7_26360 Lactuca sativa HOM05D000355 ORTHO05D000227 2.3e-07 59.3 129 35.7
MD00G1093200 Malus domestica HOM05D000355 ORTHO05D000227 2.3e-07 59.3 138 35.5
ClCG03G007260 Citrullus lanatus HOM05D000355 ORTHO05D000227 3.0e-07 58.9 145 31.0
Cc09_g10000 Coffea canephora HOM05D000355 ORTHO05D000227 3.0e-07 58.9 139 33.1
Medtr2g018175 Medicago truncatula HOM05D000355 ORTHO05D000227 3.0e-07 58.9 134 32.8
Potri.011G076900 Populus trichocarpa HOM05D000355 ORTHO05D000227 3.0e-07 58.9 129 34.1
BolC7t45520H Brassica oleracea HOM05D000355 ORTHO05D000227 4.0e-07 58.5 42 66.7
CsaV3_1G032860 Cucumis sativus L. HOM05D000355 ORTHO05D000227 4.0e-07 58.5 81 43.2
Migut.M00972 Erythranthe guttata HOM05D000355 ORTHO05D000227 4.0e-07 58.5 137 35.8
Hma1.2p1_0015F.1_g010590 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 4.0e-07 58.5 129 34.9
Thecc.06G159900 Theobroma cacao HOM05D000355 ORTHO05D000227 4.0e-07 58.5 143 37.1
arahy.Tifrunner.gnm1.ann1.5DZ9UG Arachis hypogaea HOM05D000355 ORTHO05D000227 5.2e-07 58.2 127 40.2
MSTRG.16191 Avicennia marina HOM05D000355 ORTHO05D000227 5.2e-07 58.2 140 35.7
Nitab4.5_0002507g0120 Nicotiana tabacum HOM05D000355 ORTHO05D000227 5.2e-07 58.2 127 33.9
Oeu046827.1 Olea europaea HOM05D000355 ORTHO05D000227 5.2e-07 58.2 133 37.6
Sopen03g001900 Solanum pennellii HOM05D000355 ORTHO05D000227 5.2e-07 58.2 139 33.8
Nitab4.5_0003746g0020 Nicotiana tabacum HOM05D000355 ORTHO05D000227 6.8e-07 57.8 135 34.8
TAR627G0345 Trochodendron aralioides HOM05D000355 ORTHO05D000227 6.8e-07 57.8 138 33.3
VMungo0540G1759 Vigna mungo HOM05D000355 ORTHO05D000227 6.8e-07 57.8 125 36.0
Sed0005577 Sechium edule HOM05D000355 ORTHO05D000227 8.9e-07 57.4 141 33.3
ECA234G1686 Erigeron canadensis HOM05D000355 ORTHO05D000227 1.2e-06 57.0 136 29.4
Gohir.D06G205800 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.2e-06 57.0 125 35.2
Gorai.010G240100 Gossypium raimondii HOM05D000355 ORTHO05D000227 1.2e-06 57.0 125 35.2
C07p50170 Brassica napus HOM05D000355 ORTHO05D000227 1.5e-06 56.6 118 40.7
QL05p052752 Quercus lobata HOM05D000355 ORTHO05D000227 1.5e-06 56.6 134 34.3
Rhsim02G0151500 Rhododendron simsii HOM05D000355 ORTHO05D000227 1.5e-06 56.6 134 37.3
RcHm_v2.0_Chr5g0012841 Rosa chinensis HOM05D000355 ORTHO05D000227 1.5e-06 56.6 46 60.9
Sed0025484 Sechium edule HOM05D000355 ORTHO05D000227 1.5e-06 56.6 95 41.1
MELO3C002696.2 Cucumis melo HOM05D000355 ORTHO05D000227 2.0e-06 56.2 149 30.9
Gohir.D06G140400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.0e-06 56.2 46 65.2
Gorai.010G163800 Gossypium raimondii HOM05D000355 ORTHO05D000227 2.0e-06 56.2 46 65.2
Oeu021540.1 Olea europaea HOM05D000355 ORTHO05D000227 2.0e-06 56.2 130 33.1
PGSC0003DMG400013466 Solanum tuberosum HOM05D000355 ORTHO05D000227 2.0e-06 56.2 141 34.0
CSS0013247 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.6e-06 55.8 137 39.4
CSS0049567 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 2.6e-06 55.8 137 40.1
Carub.0004s1599 Capsella rubella HOM05D000355 ORTHO05D000227 2.6e-06 55.8 141 37.6
Duzib160G0443 Durio zibethinus HOM05D000355 ORTHO05D000227 2.6e-06 55.8 142 31.0
Duzib235G1481 Durio zibethinus HOM05D000355 ORTHO05D000227 2.6e-06 55.8 145 34.5
PGSC0003DMG400013467 Solanum tuberosum HOM05D000355 ORTHO05D000227 2.6e-06 55.8 141 34.8
Ciclev10017454m.g Citrus clementina HOM05D000355 ORTHO05D000227 3.4e-06 55.5 46 63.0
COL.COLO4_22818 Corchorus olitorius HOM05D000355 ORTHO05D000227 3.4e-06 55.5 45 62.2
Gohir.A10G032700 Gossypium hirsutum HOM05D000355 ORTHO05D000227 3.4e-06 55.5 148 33.8
SalBow8G0398 Salvia bowleyana HOM05D000355 ORTHO05D000227 3.4e-06 55.5 127 33.1
BcaC06g35448 Brassica carinata HOM05D028642 ORTHO05D000227 4.4e-06 55.1 86 47.7
CSS0044867 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 4.4e-06 55.1 137 42.3
Carub.0001s2786 Capsella rubella HOM05D000355 ORTHO05D000227 4.4e-06 55.1 147 42.9
FAN21G0280 Fragaria x ananassa HOM05D000355 ORTHO05D000227 4.4e-06 55.1 46 60.9
Nitab4.5_0007383g0010 Nicotiana tabacum HOM05D000355 ORTHO05D000227 4.4e-06 55.1 138 34.1
PSO675G3834 Papaver somniferum HOM05D000355 ORTHO05D000227 4.4e-06 55.1 106 35.8
SalBow8G4340 Salvia bowleyana HOM05D000355 ORTHO05D000227 4.4e-06 55.1 127 33.1
Lalb_Chr18g0055061 Lupinus albus HOM05D000355 ORTHO05D000227 5.7e-06 54.7 135 37.0
BcaB07g32554 Brassica carinata HOM05D000355 ORTHO05D000227 7.5e-06 54.3 86 46.5
CSS0043298 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 7.5e-06 54.3 137 35.0
CAN.G638.18 Capsicum annuum HOM05D000355 ORTHO05D000227 7.5e-06 54.3 131 32.1
DCAR_007918 Daucus carota HOM05D000355 ORTHO05D000227 7.5e-06 54.3 133 34.6
Nn3g20970 Nelumbo nucifera HOM05D000355 ORTHO05D000227 9.8e-06 53.9 46 56.5


User provided reference genes

Program Settings