Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-162 576.6 316 100.0
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 7.7e-159 563.9 316 98.7
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.0e-154 549.3 316 96.5
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.6e-143 512.3 316 85.8
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.5e-138 496.5 316 79.1
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 5.3e-136 488.0 316 77.2
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 4.0e-131 471.9 316 77.5
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 4.0e-131 471.9 316 77.5
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.6e-130 469.2 316 77.2
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.6e-130 469.2 317 80.4
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 6.3e-129 464.5 316 80.7
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 3.1e-128 462.2 316 81.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.3e-123 446.0 319 69.9
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 4.4e-122 441.8 315 69.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 7.5e-122 441.0 319 69.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.6e-119 433.3 320 69.4
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.3e-102 376.3 337 58.5
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 4.7e-100 368.6 335 57.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.7e-87 326.2 326 53.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 8.7e-86 321.2 325 55.7
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 8.7e-86 321.2 325 57.2
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.5e-85 319.7 327 56.0
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.5e-85 319.7 340 50.9
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 3.3e-85 319.3 328 50.9
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 9.6e-85 317.8 322 52.2
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 2.1e-84 316.6 329 51.4
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.1e-84 316.6 329 51.4
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 2.8e-84 316.2 329 55.3
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.8e-84 316.2 331 53.2
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 3.6e-84 315.8 331 51.1
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 6.2e-84 315.1 325 56.6
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.1e-83 314.3 321 51.7
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 2.4e-83 313.2 332 54.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 3.1e-83 312.8 323 50.8
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 3.1e-83 312.8 323 50.8
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 3.1e-83 312.8 330 50.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 4.0e-83 312.4 323 50.8
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 4.0e-83 312.4 329 50.8
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.3e-83 312.0 321 51.1
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.5e-82 310.5 326 54.0
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 4.4e-82 308.9 327 49.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.4e-82 308.9 321 51.1
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 5.8e-82 308.5 322 49.7
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 7.6e-82 308.1 319 51.1
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 7.6e-82 308.1 331 52.0
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 7.6e-82 308.1 325 50.8
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 7.6e-82 308.1 331 49.8
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 9.9e-82 307.8 320 51.6
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.3e-81 307.4 328 53.7
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.7e-81 307.0 349 51.6
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 2.2e-81 306.6 327 50.5
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.9e-81 306.2 361 46.5
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.9e-81 306.2 320 51.6
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 3.8e-81 305.8 333 50.5
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.1e-80 304.3 254 57.9
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.2e-79 300.8 331 47.7
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.7e-79 299.7 330 49.1
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.7e-79 299.7 336 48.8
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.7e-79 299.7 343 47.2
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 4.6e-79 298.9 336 52.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 4.6e-79 298.9 323 49.8
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.0e-79 298.5 264 55.7
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 7.8e-79 298.1 256 57.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.0e-78 297.7 321 48.9
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.3e-78 296.6 346 47.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.9e-78 295.8 344 47.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 5.1e-78 295.4 340 47.6
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 6.6e-78 295.0 272 54.8
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 8.7e-78 294.7 323 48.0
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 2.5e-77 293.1 326 48.2
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 3.3e-77 292.7 261 55.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.3e-77 292.7 325 48.3
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.3e-76 290.8 336 47.9
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.1e-76 290.0 321 48.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.8e-76 289.7 348 47.1
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.8e-76 289.7 329 48.6
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 3.6e-76 289.3 253 56.9
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.1e-75 287.7 259 54.8
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.4e-75 287.3 254 55.5
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.1e-75 286.2 327 47.1
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.0e-75 285.8 259 54.4
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 5.3e-75 285.4 273 53.1
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 9.0e-75 284.6 370 44.1
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.2e-74 284.3 331 51.4
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.4e-74 282.7 270 53.7
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 4.5e-74 282.3 278 52.2
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 7.6e-74 281.6 335 48.1
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 9.9e-74 281.2 322 45.0
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.7e-73 280.4 271 52.4
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.4e-73 278.5 389 41.9
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 8.4e-73 278.1 251 56.2
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.4e-72 277.3 282 50.7
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 3.2e-72 276.2 254 53.5
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.2e-72 275.8 297 50.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.4e-72 275.4 335 46.6
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.7e-71 273.1 329 44.7
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 7.9e-71 271.6 334 46.7
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.9e-69 266.9 324 46.0
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 5.6e-69 265.4 357 42.9
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.6e-68 263.8 249 53.8
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.7e-68 262.7 338 45.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.1e-67 261.2 271 49.4
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.8e-67 260.4 224 54.9
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.4e-67 260.0 294 49.0
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 5.5e-64 248.8 242 56.2
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 7.1e-64 248.4 310 45.5
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 7.1e-64 248.4 255 49.0
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 4.6e-63 245.7 210 56.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.8e-62 243.8 207 56.5
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.3e-62 243.4 270 46.7
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.3e-62 243.4 354 40.1
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 4.1e-59 232.6 317 40.7
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.5e-56 222.2 386 36.3
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.9e-54 216.1 178 58.4
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.5e-53 214.2 159 61.0
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.3e-52 211.1 261 41.4
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 5.0e-49 199.1 262 40.1
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.5e-45 186.8 228 42.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.1e-43 179.5 167 49.7
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.2e-42 177.9 275 38.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.0e-41 174.9 181 54.1
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 6.5e-41 172.2 174 48.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.5e-40 170.2 315 36.5
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 5.2e-30 136.0 272 33.8
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.7e-30 135.6 150 48.7
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.7e-26 122.1 153 43.1
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 2.8e-20 103.6 121 53.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.7e-20 103.2 152 37.5
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.9e-17 93.6 80 52.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 6.5e-17 92.4 58 72.4
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.2e-16 89.7 119 48.7
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.3e-12 78.2 58 65.5
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.7e-12 76.6 114 37.7
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.1e-11 73.6 52 55.8
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.7e-10 70.5 100 42.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 5.0e-09 66.2 102 34.3


User provided reference genes

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