Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p27540 Brassica napus HOM05D006462 ORTHO05D008067 8.0e-45 183.3 90 100.0
AL8G14020 Arabidopsis lyrata HOM05D006462 ORTHO05D008067 7.6e-19 97.1 83 63.9
Carub.0008s0300 Capsella rubella HOM05D006462 ORTHO05D008067 1.7e-18 95.9 83 62.7
AT5G45170 Arabidopsis thaliana HOM05D006462 ORTHO05D008067 2.2e-18 95.5 83 62.7
BcaC06g31570 Brassica carinata HOM05D006462 ORTHO05D008067 2.9e-18 95.1 83 62.7
BcaC06g34485 Brassica carinata HOM05D006462 ORTHO05D008067 6.4e-18 94.0 83 61.4
A06p46730 Brassica napus HOM05D006462 ORTHO05D008067 6.4e-18 94.0 83 61.4
C07p27950 Brassica napus HOM05D006462 ORTHO05D008067 6.4e-18 94.0 83 61.4
BolC7t43328H Brassica oleracea HOM05D006462 ORTHO05D008067 6.4e-18 94.0 83 61.4
BraA06t27545Z Brassica rapa HOM05D006462 ORTHO05D008067 6.4e-18 94.0 83 61.4
CARHR177360 Cardamine hirsuta HOM05D006462 ORTHO05D008067 8.4e-18 93.6 83 61.4
Aa31LG9G7960 Aethionema arabicum HOM05D006462 ORTHO05D008067 2.4e-17 92.0 88 58.0
BolC9t55623H Brassica oleracea HOM05D006462 ORTHO05D008067 2.4e-17 92.0 46 89.1
Thhalv10000927m.g Eutrema salsugineum HOM05D006462 ORTHO05D008067 2.4e-17 92.0 83 60.2
Sp2g09990 Schrenkiella parvula HOM05D006462 ORTHO05D008067 4.2e-17 91.3 83 60.2
THA.LOC104812900 Tarenaya hassleriana HOM05D006462 ORTHO05D008067 6.6e-15 84.0 86 54.7
Eucgr.D01035 Eucalyptus grandis HOM05D006462 ORTHO05D008067 3.3e-14 81.6 83 53.0
Cc09_g06660 Coffea canephora HOM05D006462 ORTHO05D008067 1.2e-13 79.7 83 50.6
Dinv10269 Davidia involucrata HOM05D006462 ORTHO05D008067 1.2e-13 79.7 83 49.4
Cfa004797 Carpinus fangiana HOM05D006462 ORTHO05D008067 3.6e-13 78.2 86 51.2
Haze_10391 Corylus avellana HOM05D006462 ORTHO05D008067 3.6e-13 78.2 86 51.2
GSVIVG01001717001 Vitis vinifera HOM05D006462 ORTHO05D008067 1.1e-12 76.6 83 47.0
Sc16g0001760 Simmondsia chinensis HOM05D006462 ORTHO05D008067 1.4e-12 76.3 83 48.2
CANSAT35G0316 Cannabis sativa HOM05D006462 ORTHO05D008067 2.4e-12 75.5 83 49.4
ClCG01G025490 Citrullus lanatus HOM05D006462 ORTHO05D008067 2.4e-12 75.5 83 49.4
CsaV3_6G052750 Cucumis sativus L. HOM05D006462 ORTHO05D008067 2.4e-12 75.5 83 49.4
Aqoxy4G00016 Aquilegia oxysepala HOM05D006462 ORTHO05D008067 3.1e-12 75.1 83 45.8
CSS0006730 Camellia sinensis var. sinensis HOM05D006462 ORTHO05D008067 3.1e-12 75.1 83 48.2
Cpa.g.sc192.4 Carica papaya HOM05D006462 ORTHO05D008067 3.1e-12 75.1 83 50.6
FvH4_3g11870 Fragaria vesca HOM05D006462 ORTHO05D008067 3.1e-12 75.1 83 51.8
FAN25G3296 Fragaria x ananassa HOM05D006462 ORTHO05D008067 3.1e-12 75.1 83 51.8
RcHm_v2.0_Chr5g0019301 Rosa chinensis HOM05D006462 ORTHO05D008067 3.1e-12 75.1 83 51.8
FAN16G0781 Fragaria x ananassa HOM05D006462 ORTHO05D008067 4.0e-12 74.7 83 50.6
QL03p039440 Quercus lobata HOM05D006462 ORTHO05D008067 4.0e-12 74.7 86 50.0
RcHm_v2.0_Chr5g0019331 Rosa chinensis HOM05D006462 ORTHO05D008067 4.0e-12 74.7 83 50.6
TAR627G0872 Trochodendron aralioides HOM05D006462 ORTHO05D008067 4.0e-12 74.7 83 45.8
MELO3C007035.2 Cucumis melo HOM05D006462 ORTHO05D008067 5.3e-12 74.3 83 48.2
FAN21G3298 Fragaria x ananassa HOM05D006462 ORTHO05D008067 5.3e-12 74.3 83 50.6
TWI73G0634 Tripterygium wilfordii HOM05D006462 ORTHO05D008067 5.3e-12 74.3 86 48.8
Atru.chr10.574 Acer truncatum HOM05D006462 ORTHO05D008067 1.2e-11 73.2 83 48.2
Ciclev10015603m.g Citrus clementina HOM05D006462 ORTHO05D008067 1.2e-11 73.2 83 45.8
Gorai.011G050700 Gossypium raimondii HOM05D006462 ORTHO05D008067 1.2e-11 73.2 86 52.3
Hma1.2p1_0365F.1_g136800 Hydrangea macrophylla HOM05D006462 ORTHO05D008067 1.2e-11 73.2 86 50.0
Lalb_Chr15g0088641 Lupinus albus HOM05D006462 ORTHO05D008067 1.2e-11 73.2 83 47.0
Manes.16G054132 Manihot esculenta HOM05D006462 ORTHO05D008067 1.2e-11 73.2 83 49.4
MD10G1238000 Malus domestica HOM05D006462 ORTHO05D008067 1.5e-11 72.8 86 48.8
PGR083G2188 Punica granatum HOM05D006462 ORTHO05D008067 1.5e-11 72.8 83 44.6
CiPaw.09G151400 Carya illinoinensis HOM05D006462 ORTHO05D008067 2.0e-11 72.4 83 47.0
Prupe.4G106200 Prunus persica HOM05D006462 ORTHO05D008067 2.0e-11 72.4 83 48.2
Duzib235G0723 Durio zibethinus HOM05D006462 ORTHO05D008067 2.6e-11 72.0 86 51.2
Nitab4.5_0011847g0020 Nicotiana tabacum HOM05D006462 ORTHO05D008067 2.6e-11 72.0 83 45.8
Glyma.09G021500 Glycine max HOM05D006462 ORTHO05D008067 3.4e-11 71.6 86 46.5
Glyma.15G127800 Glycine max HOM05D006462 ORTHO05D008067 3.4e-11 71.6 86 46.5
Gohir.A10G046300 Gossypium hirsutum HOM05D006462 ORTHO05D008067 3.4e-11 71.6 85 51.8
Gohir.D10G047600 Gossypium hirsutum HOM05D006462 ORTHO05D008067 3.4e-11 71.6 85 51.8
Potri.015G112500 Populus trichocarpa HOM05D006462 ORTHO05D008067 3.4e-11 71.6 86 47.7
Rhsim13G0127700 Rhododendron simsii HOM05D006462 ORTHO05D008067 4.4e-11 71.2 86 44.2
Sabra15G0134200 Salix brachista HOM05D006462 ORTHO05D008067 4.4e-11 71.2 86 48.8
Lj6g0000446 Lotus japonicus HOM05D006462 ORTHO05D008067 5.8e-11 70.9 86 45.3
Nitab4.5_0005250g0020 Nicotiana tabacum HOM05D006462 ORTHO05D008067 5.8e-11 70.9 83 44.6
vmacro03491 Vaccinium macrocarpon HOM05D006462 ORTHO05D008067 7.6e-11 70.5 86 41.9
Phvul.006G130700 Phaseolus vulgaris HOM05D006462 ORTHO05D008067 9.9e-11 70.1 86 46.5
arahy.Tifrunner.gnm1.ann1.2J20F7 Arachis hypogaea HOM05D006462 ORTHO05D008067 1.3e-10 69.7 86 44.2
arahy.Tifrunner.gnm1.ann1.CJL35W Arachis hypogaea HOM05D006462 ORTHO05D008067 1.3e-10 69.7 86 44.2
CAN.G675.12 Capsicum annuum HOM05D006462 ORTHO05D008067 1.7e-10 69.3 86 45.3
Hma1.2p1_0365F.1_g136810 Hydrangea macrophylla HOM05D006462 ORTHO05D008067 1.7e-10 69.3 85 48.2
COL.COLO4_30938 Corchorus olitorius HOM05D006462 ORTHO05D008067 2.2e-10 68.9 83 48.2
Solyc02g069410.4 Solanum lycopersicum HOM05D006462 ORTHO05D008067 2.9e-10 68.6 83 42.2
Sopen02g018560 Solanum pennellii HOM05D006462 ORTHO05D008067 2.9e-10 68.6 83 42.2
PGSC0003DMG400021145 Solanum tuberosum HOM05D006462 ORTHO05D008067 2.9e-10 68.6 83 42.2
MD10G1237500 Malus domestica HOM05D006462 ORTHO05D008067 3.8e-10 68.2 82 46.3
MSTRG.14813 Avicennia marina HOM05D006462 ORTHO05D008067 4.9e-10 67.8 83 43.4
Ca_00797_v3 Cicer arietinum L. HOM05D006462 ORTHO05D008067 4.9e-10 67.8 86 43.0
Lsat_1_v5_gn_8_117040 Lactuca sativa HOM05D006462 ORTHO05D008067 4.9e-10 67.8 83 44.6
SGA_v2.0_scaffold51G18669 Striga asiatica HOM05D006462 ORTHO05D008067 6.4e-10 67.4 83 43.4
ECA232G4418 Erigeron canadensis HOM05D006462 ORTHO05D008067 1.1e-09 66.6 83 43.4
MD10G1237600 Malus domestica HOM05D006462 ORTHO05D008067 1.1e-09 66.6 85 48.2
VMungo0540G1781 Vigna mungo HOM05D006462 ORTHO05D008067 1.4e-09 66.2 86 43.0
MBI18_g37401_MAGBIO Magnolia biondii HOM05D006462 ORTHO05D008067 1.9e-09 65.9 83 42.2
PSO675G5440 Papaver somniferum HOM05D006462 ORTHO05D008067 1.9e-09 65.9 83 42.2
Zm00001eb032640 Zea mays HOM05D006462 ORTHO05D008067 1.9e-09 65.9 83 42.2
PSO675G4077 Papaver somniferum HOM05D006462 ORTHO05D008067 2.4e-09 65.5 83 42.2
HPP92_012287 Vanilla planifolia HOM05D006462 ORTHO05D008067 3.2e-09 65.1 86 43.0
ATR0763G016 Amborella trichopoda HOM05D006462 ORTHO05D008067 4.2e-09 64.7 83 38.6
EL10Ac8g19520 Beta vulgaris HOM05D006462 ORTHO05D008067 5.4e-09 64.3 83 43.4
Migut.H01302 Erythranthe guttata HOM05D006462 ORTHO05D008067 5.4e-09 64.3 83 42.2
Thecc.06G136400 Theobroma cacao HOM05D006462 ORTHO05D008067 7.1e-09 63.9 82 46.3
Psat1g169320 Pisum sativum HOM05D006462 ORTHO05D008067 1.2e-08 63.2 86 41.9
TPR.G26539 Trifolium pratense HOM05D006462 ORTHO05D008067 1.2e-08 63.2 86 41.9
Nn7g38003 Nelumbo nucifera HOM05D006462 ORTHO05D008067 1.6e-08 62.8 83 38.6
Medtr2g029350 Medicago truncatula HOM05D006462 ORTHO05D008067 2.1e-08 62.4 86 41.9
Os12g0630700 Oryza sativa ssp. japonica HOM05D006462 ORTHO05D008067 3.5e-08 61.6 83 41.0
HanXRQChr04g0115281 Helianthus annuus HOM05D006462 ORTHO05D008067 2.3e-07 58.9 83 38.6
unitig_21.g20206 Utricularia gibba HOM05D006462 ORTHO05D008067 2.3e-07 58.9 83 41.0
SalBow7G1415 Salvia bowleyana HOM05D006462 ORTHO05D008067 8.7e-07 57.0 103 34.0


User provided reference genes

Program Settings