Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 1.6e-191 672.5 337 100.0
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.6e-125 453.4 250 93.2
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 1.1e-99 367.5 295 68.8
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.9e-99 366.7 295 68.8
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 1.9e-91 340.1 332 60.2
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 2.2e-87 326.6 293 63.5
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 4.9e-87 325.5 295 63.1
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.1e-86 324.3 297 62.0
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.4e-86 323.9 293 62.5
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 1.4e-86 323.9 293 62.5
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 5.1e-84 315.5 295 60.7
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 5.1e-84 315.5 295 60.7
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 3.3e-83 312.8 295 60.3
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 6.4e-79 298.5 298 58.4
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 6.6e-76 288.5 299 57.5
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 7.3e-75 285.0 299 57.2
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 1.8e-73 280.4 185 79.5
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.1e-65 254.6 266 58.3
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 6.9e-65 251.9 278 55.4
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 8.7e-60 235.0 232 59.9
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.9e-59 233.8 275 53.1
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 4.5e-56 222.6 232 56.5
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 5.3e-49 199.1 298 41.9
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 6.9e-49 198.7 300 42.0
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 3.4e-48 196.4 298 41.3
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 3.8e-47 193.0 300 42.7
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 6.5e-47 192.2 298 41.3
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.5e-46 190.3 277 43.3
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 3.2e-46 189.9 294 40.8
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 5.5e-46 189.1 294 40.8
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.2e-45 188.0 306 39.9
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 2.1e-45 187.2 303 41.6
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 2.3e-44 183.7 301 40.9
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 3.0e-44 183.3 298 39.6
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.7e-44 181.8 292 39.4
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 8.7e-44 181.8 301 39.2
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.1e-43 181.4 292 39.4
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 1.1e-43 181.4 298 39.6
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 3.7e-42 176.4 298 38.6
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 1.8e-41 174.1 341 35.2
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 2.4e-41 173.7 306 38.2
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 3.1e-41 173.3 269 40.9
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 5.3e-41 172.6 337 37.7
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 3.4e-40 169.9 299 36.8
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.7e-40 168.7 292 38.7
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.0e-39 168.3 299 36.5
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 1.0e-39 168.3 299 36.1
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 1.0e-39 168.3 300 39.3
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.3e-39 167.9 298 36.2
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 2.9e-39 166.8 298 38.3
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.1e-38 164.9 293 38.9
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 1.1e-38 164.9 299 36.8
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 1.1e-38 164.9 293 36.5
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.1e-38 164.9 273 39.9
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.4e-38 164.5 266 39.8
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.4e-38 164.5 301 37.2
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.9e-38 164.1 299 36.5
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 2.5e-38 163.7 297 36.0
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 2.5e-38 163.7 301 35.9
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.5e-38 163.7 291 37.8
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 3.2e-38 163.3 258 40.3
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 5.5e-38 162.5 150 58.0
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.2e-37 161.4 301 37.5
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.6e-37 161.0 306 36.6
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 1.8e-36 157.5 294 35.0
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.9e-36 156.4 143 62.9
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 5.1e-36 156.0 301 37.2
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.1e-35 154.8 276 36.6
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 2.0e-35 154.1 339 34.2
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.5e-35 153.7 298 36.6
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 3.3e-35 153.3 281 38.8
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 3.3e-35 153.3 295 35.9
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 5.7e-35 152.5 296 37.8
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 9.7e-35 151.8 297 35.4
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.7e-34 151.0 253 38.7
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.7e-34 151.0 263 39.9
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 2.8e-34 150.2 247 37.7
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 3.7e-34 149.8 245 38.0
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.1e-33 148.3 154 55.2
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 2.4e-33 147.1 311 34.7
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 2.4e-33 147.1 301 35.5
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 3.1e-33 146.7 290 35.5
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 3.1e-33 146.7 266 38.3
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 5.3e-33 146.0 295 35.6
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 5.3e-33 146.0 295 35.6
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 1.5e-32 144.4 293 37.2
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 1.5e-32 144.4 269 34.9
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.5e-32 144.4 290 34.5
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.5e-32 144.4 272 36.8
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 2.0e-32 144.1 246 39.8
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 2.6e-32 143.7 260 38.8
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 3.4e-32 143.3 299 35.8
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 3.4e-32 143.3 150 55.3
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 5.9e-32 142.5 300 34.7
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 1.7e-31 141.0 266 35.3
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 2.2e-31 140.6 95 78.9
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 2.2e-31 140.6 95 78.9
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.2e-31 140.6 270 36.7
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.8e-31 139.8 300 35.0
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-31 139.8 270 36.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.0e-31 139.4 270 36.7
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 6.5e-31 139.0 281 34.2
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.1e-30 138.3 153 51.0
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 3.2e-30 136.7 328 32.6
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 4.2e-30 136.3 150 52.0
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 6.1e-29 132.5 277 32.5
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.5e-27 127.9 278 31.3
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 3.7e-26 123.2 303 29.7
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.8e-26 122.9 136 51.5
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 4.5e-24 116.3 291 32.6
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 2.2e-23 114.0 354 28.0
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 3.6e-21 106.7 275 32.0
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 4.7e-21 106.3 157 40.8
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 6.7e-20 102.4 155 40.6
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 5.7e-19 99.4 94 58.5
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-18 98.2 184 32.1
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.8e-18 97.1 238 31.5
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 5.3e-17 92.8 365 23.8
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 9.1e-17 92.0 133 41.4
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.7e-15 87.8 109 49.5
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.2e-15 87.4 177 33.9
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 8.5e-15 85.5 153 32.7
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.1e-14 85.1 150 39.3
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.5e-14 84.7 176 31.8
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 4.2e-14 83.2 136 39.0
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 4.2e-14 83.2 187 30.5
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 4.7e-13 79.7 128 35.2
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 6.8e-12 75.9 113 40.7
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 5.7e-11 72.8 159 28.3
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 4.8e-10 69.7 78 47.4
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 8.3e-10 68.9 158 28.5
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 1.1e-09 68.6 71 50.7
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 2.0e-08 64.3 172 32.0
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 1.3e-07 61.6 81 40.7
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 9.5e-06 55.5 62 58.1
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 9.5e-06 55.5 63 52.4


User provided reference genes

Program Settings