Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.0e-174 614.8 336 100.0
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.0e-174 614.8 336 100.0
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 4.5e-173 611.3 336 99.4
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 7.7e-149 530.8 338 89.6
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 6.3e-143 511.1 340 86.2
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-134 482.6 342 83.0
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 3.7e-111 405.6 358 69.8
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 9.2e-94 347.8 349 64.5
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.5e-93 345.9 358 62.8
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 9.5e-91 337.8 345 62.0
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-89 333.2 346 63.6
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 5.2e-89 332.0 341 61.3
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 8.9e-89 331.3 341 61.3
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-88 329.7 341 61.0
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 2.2e-87 326.6 341 62.8
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 3.7e-87 325.9 344 62.2
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 3.3e-83 312.8 356 58.7
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 8.1e-82 308.1 356 58.1
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.3e-75 286.2 348 59.2
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 7.3e-75 285.0 342 57.3
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 8.9e-73 278.1 353 56.9
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 4.3e-67 259.2 280 60.0
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 6.9e-65 251.9 350 53.7
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 6.4e-63 245.4 264 60.6
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 6.0e-45 185.7 385 43.9
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-43 180.6 379 43.8
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 4.3e-43 179.5 380 43.4
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 4.3e-43 179.5 398 41.5
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 5.7e-43 179.1 399 41.1
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 1.6e-42 177.6 423 40.0
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-41 174.5 376 42.6
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 5.3e-41 172.6 370 42.4
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 5.3e-41 172.6 418 39.0
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 7.6e-40 168.7 415 40.2
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 7.6e-40 168.7 415 40.2
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 7.6e-40 168.7 377 41.9
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-39 168.3 413 39.0
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 3.8e-39 166.4 362 41.7
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 3.8e-39 166.4 362 41.7
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-38 164.9 408 40.4
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.4e-38 164.5 419 38.4
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-38 164.1 365 41.9
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.9e-38 164.1 387 39.3
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-38 164.1 365 41.9
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.5e-38 163.7 398 37.9
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 7.1e-38 162.2 436 37.4
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.3e-36 157.1 418 37.6
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 2.5e-35 153.7 446 36.8
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.3e-35 153.3 415 38.1
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.3e-31 141.4 406 37.4
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 6.1e-29 132.5 433 35.1
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.5e-19 101.3 251 33.9
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 5.7e-19 99.4 193 37.3
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.3e-18 98.2 178 39.9
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 7.0e-17 92.4 377 30.5
BolC7t43237H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-16 91.7 66 69.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.2e-16 91.7 334 30.8
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.5e-16 91.3 382 29.3
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 5.9e-16 89.4 334 29.9
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 2.2e-15 87.4 191 36.1
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 8.5e-15 85.5 192 37.0
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 8.5e-15 85.5 200 35.0
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 8.5e-15 85.5 173 37.0
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 1.1e-14 85.1 447 28.4
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.5e-14 84.7 327 30.3
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 3.2e-14 83.6 191 36.1
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 4.2e-14 83.2 219 33.3
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.2e-14 83.2 425 28.9
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 5.5e-14 82.8 425 28.0
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 7.2e-14 82.4 177 37.9
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 9.4e-14 82.0 195 35.9
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.2e-13 81.6 419 27.0
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.2e-13 81.6 177 36.7
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.2e-13 81.6 225 35.6
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.6e-13 81.3 192 36.5
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.7e-13 80.5 410 30.2
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.6e-13 80.1 182 39.6
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 3.6e-13 80.1 359 27.3
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 3.6e-13 80.1 421 26.4
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 3.6e-13 80.1 286 29.7
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 3.6e-13 80.1 366 27.9
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 4.7e-13 79.7 191 36.1
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 8.0e-13 79.0 391 29.9
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 8.0e-13 79.0 183 35.5
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.0e-12 78.6 358 29.3
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 2.3e-12 77.4 342 30.4
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 2.3e-12 77.4 166 36.7
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 3.0e-12 77.0 197 33.5
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 6.7e-12 75.9 193 33.7
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 8.8e-12 75.5 208 32.7
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.5e-11 74.7 195 34.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 1.5e-11 74.7 279 31.5
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.0e-11 74.3 248 29.8
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.6e-11 73.9 215 33.0
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 2.6e-11 73.9 421 25.7
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 2.6e-11 73.9 189 34.4
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.3e-11 73.6 191 36.1
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 4.4e-11 73.2 230 29.6
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 4.4e-11 73.2 190 33.7
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 5.7e-11 72.8 53 64.2
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.7e-11 72.8 170 37.1
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 5.7e-11 72.8 182 33.0
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 7.4e-11 72.4 357 26.9
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.7e-10 71.2 365 27.9
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 2.2e-10 70.9 385 27.8
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.8e-10 70.5 246 26.0
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 3.7e-10 70.1 433 27.3
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 6.3e-10 69.3 80 46.2
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 6.3e-10 69.3 57 61.4
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 8.2e-10 68.9 326 28.8
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 8.2e-10 68.9 81 50.6
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.8e-09 67.8 200 32.0
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.4e-09 67.4 188 33.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 3.1e-09 67.0 407 28.0
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.0e-09 65.9 172 32.6
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 7.0e-09 65.9 361 26.3
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.2e-08 65.1 200 29.5
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 2.0e-08 64.3 191 32.5
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.0e-08 64.3 200 32.0
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 2.0e-08 64.3 397 27.7
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 2.0e-08 64.3 387 27.6
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 2.6e-08 63.9 80 42.5
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 2.6e-08 63.9 182 32.4
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 3.5e-08 63.5 172 32.0
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 3.5e-08 63.5 380 26.1
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 5.9e-08 62.8 376 28.2
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 5.9e-08 62.8 154 33.8
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.0e-07 62.0 392 27.3
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.7e-07 61.2 172 32.6
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.7e-07 61.2 62 54.8
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 2.9e-07 60.5 61 50.8
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.8e-07 60.1 339 27.7
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.1e-06 58.5 307 27.4
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 1.5e-06 58.2 183 30.6
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 1.5e-06 58.2 190 28.9
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.9e-06 57.8 57 52.6
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 2.5e-06 57.4 205 31.7
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 2.5e-06 57.4 372 28.5
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 5.5e-06 56.2 345 23.8
C07p27070 Brassica napus HOM05D004305 ORTHO05D005159 9.4e-06 55.5 56 57.1


User provided reference genes

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