Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p26290 Brassica napus HOM05D000028 ORTHO05D042595 5.1e-76 287.7 151 100.0
BolC9t55531H Brassica oleracea HOM05D000028 ORTHO05D042595 2.8e-58 228.8 130 94.6
A09p20770 Brassica napus HOM05D000028 ORTHO05D000390 1.8e-33 146.4 157 61.1
BraA09t37681Z Brassica rapa HOM05D000028 ORTHO05D000390 1.8e-33 146.4 157 61.1
BcaB07g30980 Brassica carinata HOM05D000028 ORTHO05D000390 2.4e-33 146.0 143 65.0
BcaB06g27459 Brassica carinata HOM05D000028 ORTHO05D000390 3.0e-28 129.0 157 55.4
BraA04t16971Z Brassica rapa HOM05D000028 ORTHO05D000390 3.9e-28 128.6 157 54.1
A04p13120 Brassica napus HOM05D000028 ORTHO05D000390 8.8e-28 127.5 157 53.5
C04p46870 Brassica napus HOM05D000028 ORTHO05D000390 2.0e-27 126.3 157 54.1
BolC4t26276H Brassica oleracea HOM05D000028 ORTHO05D000390 2.0e-27 126.3 157 54.1
Sp7g01750 Schrenkiella parvula HOM05D000028 ORTHO05D000390 1.3e-26 123.6 158 55.1
Thhalv10027830m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 2.4e-25 119.4 141 56.0
AL7G49770 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 1.0e-23 114.0 157 49.7
AT5G40210 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 7.2e-22 107.8 157 48.4
CARHR261910 Cardamine hirsuta HOM05D000028 ORTHO05D000390 2.1e-21 106.3 141 52.5
Carub.0007s3541 Capsella rubella HOM05D000028 ORTHO05D000390 2.3e-20 102.8 158 46.8
Carub.0007s3542 Capsella rubella HOM05D000028 ORTHO05D000390 3.7e-18 95.5 158 44.9
AL5G17590 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 7.7e-16 87.8 138 43.5
BcaC06g33757 Brassica carinata HOM05D000028 ORTHO05D000390 5.0e-15 85.1 154 40.9
C07p37310 Brassica napus HOM05D000028 ORTHO05D000390 5.0e-15 85.1 154 40.9
BolC7t44239H Brassica oleracea HOM05D000028 ORTHO05D000390 5.0e-15 85.1 154 40.9
Sp2g17060 Schrenkiella parvula HOM05D000028 ORTHO05D000390 6.5e-15 84.7 154 40.3
BcaC04g21874 Brassica carinata HOM05D000028 ORTHO05D000390 8.5e-15 84.3 115 53.9
A06p40680 Brassica napus HOM05D000028 ORTHO05D000390 1.1e-14 84.0 154 40.3
THA.LOC104805405 Tarenaya hassleriana HOM05D000028 ORTHO05D000390 2.5e-14 82.8 139 42.4
Aa31LG9G1480 Aethionema arabicum HOM05D000028 ORTHO05D000390 2.7e-13 79.3 117 47.0
BcaC06g30934 Brassica carinata HOM05D000028 ORTHO05D000390 2.7e-13 79.3 144 41.7
TWI36G0437 Tripterygium wilfordii HOM05D000028 ORTHO05D000390 4.7e-13 78.6 138 42.0
THA.LOC104805403 Tarenaya hassleriana HOM05D000028 ORTHO05D000390 8.0e-13 77.8 154 39.6
Aa31LG9G1450 Aethionema arabicum HOM05D000028 ORTHO05D000390 1.0e-12 77.4 156 39.1
Thhalv10004582m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 1.4e-12 77.0 169 37.3
BraA06t26989Z Brassica rapa HOM05D000028 ORTHO05D000390 4.0e-12 75.5 166 37.3
AL5G17620 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 6.7e-12 74.7 186 34.4
Gohir.A05G360500 Gossypium hirsutum HOM05D000028 ORTHO05D000390 8.8e-12 74.3 137 40.9
THA.LOC104825297 Tarenaya hassleriana HOM05D000028 ORTHO05D000390 8.8e-12 74.3 137 43.8
BcaC03g17501 Brassica carinata HOM05D000028 ORTHO05D000390 1.5e-11 73.6 133 38.3
BolC2t11525H Brassica oleracea HOM05D000028 ORTHO05D000390 1.5e-11 73.6 133 38.3
Carub.0005s0665 Capsella rubella HOM05D000028 ORTHO05D000390 1.5e-11 73.6 166 34.3
BcaB07g30135 Brassica carinata HOM05D000028 ORTHO05D000390 2.0e-11 73.2 97 45.4
A02p35740 Brassica napus HOM05D000028 ORTHO05D000390 2.0e-11 73.2 97 45.4
C02p54620 Brassica napus HOM05D000028 ORTHO05D000390 2.0e-11 73.2 97 45.4
BraA02t08576Z Brassica rapa HOM05D000028 ORTHO05D000390 2.0e-11 73.2 97 45.4
Aa31LG2G4760 Aethionema arabicum HOM05D000028 ORTHO05D000390 2.6e-11 72.8 97 46.4
Carub.0005s0664 Capsella rubella HOM05D000028 ORTHO05D000390 2.6e-11 72.8 106 48.1
Thhalv10004446m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 3.3e-11 72.4 97 46.4
Sp2g17050 Schrenkiella parvula HOM05D000028 ORTHO05D000390 3.3e-11 72.4 97 46.4
BcaB04g19454 Brassica carinata HOM05D000028 ORTHO05D000390 4.4e-11 72.0 97 45.4
BcaC06g30933 Brassica carinata HOM05D000028 ORTHO05D000390 4.4e-11 72.0 136 40.4
AT3G28100 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 5.7e-11 71.6 99 49.5
C02p54630 Brassica napus HOM05D000028 ORTHO05D000390 5.7e-11 71.6 99 50.5
BolC2t11526H Brassica oleracea HOM05D000028 ORTHO05D000390 5.7e-11 71.6 99 50.5
Cpa.g.sc286.2 Carica papaya HOM05D000028 ORTHO05D000390 5.7e-11 71.6 137 39.4
Gohir.A11G067900 Gossypium hirsutum HOM05D000028 ORTHO05D000390 5.7e-11 71.6 133 39.1
Gohir.D11G071700 Gossypium hirsutum HOM05D000028 ORTHO05D000390 5.7e-11 71.6 133 39.1
Gorai.007G077000 Gossypium raimondii HOM05D000028 ORTHO05D000390 5.7e-11 71.6 133 39.1
AL5G17580 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 7.5e-11 71.2 97 45.4
AT3G28050 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 7.5e-11 71.2 97 45.4
AT3G28130 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 7.5e-11 71.2 166 36.1
Manes.17G123900 Manihot esculenta HOM05D000028 ORTHO05D000390 9.7e-11 70.9 149 36.9
AL5G17610 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 1.3e-10 70.5 99 48.5
Carub.0005s0657 Capsella rubella HOM05D000028 ORTHO05D000390 1.3e-10 70.5 97 45.4
Gorai.012G059900 Gossypium raimondii HOM05D000028 ORTHO05D000390 1.3e-10 70.5 186 33.9
Thecc.04G005300 Theobroma cacao HOM05D000028 ORTHO05D000390 1.7e-10 70.1 166 35.5
PGR142G4415 Punica granatum HOM05D000028 ORTHO05D000390 2.2e-10 69.7 135 38.5
AT3G28080 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 2.8e-10 69.3 97 49.5
BcaC04g23884 Brassica carinata HOM05D000028 ORTHO05D000390 2.8e-10 69.3 97 43.3
CARHR149680 Cardamine hirsuta HOM05D000028 ORTHO05D000390 3.7e-10 68.9 134 38.8
Eucgr.J00139 Eucalyptus grandis HOM05D000028 ORTHO05D000390 3.7e-10 68.9 133 39.1
Manes.15G179000 Manihot esculenta HOM05D000028 ORTHO05D000390 3.7e-10 68.9 154 35.7
Actinidia06036 Actinidia chinensis HOM05D000028 ORTHO05D000390 4.8e-10 68.6 141 38.3
Aa31LG9G1490 Aethionema arabicum HOM05D000028 ORTHO05D000390 4.8e-10 68.6 118 44.9
Duzib147G0374 Durio zibethinus HOM05D000028 ORTHO05D000390 4.8e-10 68.6 135 38.5
Thhalv10004485m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 4.8e-10 68.6 99 49.5
Atru.chr6.2173 Acer truncatum HOM05D000028 ORTHO05D000390 6.3e-10 68.2 140 39.3
CSS0005234 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 6.3e-10 68.2 141 38.3
CSS0046096 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 6.3e-10 68.2 141 38.3
Migut.H00146 Erythranthe guttata HOM05D000028 ORTHO05D000390 6.3e-10 68.2 159 34.6
BcaB07g30134 Brassica carinata HOM05D000028 ORTHO05D000390 8.2e-10 67.8 99 48.5
Carub.0005s0662 Capsella rubella HOM05D000028 ORTHO05D000390 1.1e-09 67.4 113 45.1
CARHR149700 Cardamine hirsuta HOM05D000028 ORTHO05D000390 1.1e-09 67.4 99 45.5
CiPaw.03G035800 Carya illinoinensis HOM05D000028 ORTHO05D000390 1.1e-09 67.4 154 35.1
Actinidia36070 Actinidia chinensis HOM05D000028 ORTHO05D000390 1.4e-09 67.0 141 38.3
Glyma.08G339700 Glycine max HOM05D000028 ORTHO05D000390 1.4e-09 67.0 163 31.9
Atru.chr6.2174 Acer truncatum HOM05D000028 ORTHO05D000390 1.8e-09 66.6 97 46.4
BraA06t26988Z Brassica rapa HOM05D000028 ORTHO05D000390 1.8e-09 66.6 97 49.5
Carub.0005s0663 Capsella rubella HOM05D000028 ORTHO05D000390 1.8e-09 66.6 95 47.4
Eucgr.I01830 Eucalyptus grandis HOM05D000028 ORTHO05D000390 1.8e-09 66.6 138 36.2
Psat3g172640 Pisum sativum HOM05D000028 ORTHO05D000390 1.8e-09 66.6 97 46.4
TPR.G38836 Trifolium pratense HOM05D000028 ORTHO05D000390 1.8e-09 66.6 138 34.1
Lj1g0000817 Lotus japonicus HOM05D000028 ORTHO05D000390 2.4e-09 66.2 97 46.4
Potri.001G337100 Populus trichocarpa HOM05D000028 ORTHO05D000390 2.4e-09 66.2 143 36.4
QL02p077380 Quercus lobata HOM05D000028 ORTHO05D000390 2.4e-09 66.2 138 37.0
RcHm_v2.0_Chr2g0170701 Rosa chinensis HOM05D000028 ORTHO05D000390 2.4e-09 66.2 157 36.3
THA.LOC104805406 Tarenaya hassleriana HOM05D000028 ORTHO05D000390 2.4e-09 66.2 97 44.3
A02p35770 Brassica napus HOM05D000028 ORTHO05D000390 4.1e-09 65.5 99 47.5
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 4.1e-09 65.5 99 47.5
Haze_14647 Corylus avellana HOM05D000028 ORTHO05D000390 4.1e-09 65.5 141 37.6
Eucgr.J00147 Eucalyptus grandis HOM05D000028 ORTHO05D000390 4.1e-09 65.5 127 37.8
CAN.G206.45 Capsicum annuum HOM05D000028 ORTHO05D000390 5.3e-09 65.1 97 46.4
TPR.G30819 Trifolium pratense HOM05D000028 ORTHO05D000390 5.3e-09 65.1 97 45.4
BcaC06g33756 Brassica carinata HOM05D000028 ORTHO05D000390 7.0e-09 64.7 97 48.5
C09p03810 Brassica napus HOM05D000028 ORTHO05D000390 7.0e-09 64.7 98 42.9
BolC7t44240H Brassica oleracea HOM05D000028 ORTHO05D000390 7.0e-09 64.7 97 48.5
BraA09t35995Z Brassica rapa HOM05D000028 ORTHO05D000390 7.0e-09 64.7 99 42.4
Solyc02g087060.4 Solanum lycopersicum HOM05D000028 ORTHO05D000390 7.0e-09 64.7 97 45.4
Sopen02g031820 Solanum pennellii HOM05D000028 ORTHO05D000390 7.0e-09 64.7 97 45.4
AL5G17600 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 9.1e-09 64.3 113 44.2
Eucgr.J00146 Eucalyptus grandis HOM05D000028 ORTHO05D000390 9.1e-09 64.3 105 41.0
A09p03570 Brassica napus HOM05D000028 ORTHO05D000390 1.2e-08 63.9 99 42.4
Eucgr.J00152 Eucalyptus grandis HOM05D000028 ORTHO05D000390 1.6e-08 63.5 105 40.0
Sed0002128 Sechium edule HOM05D000028 ORTHO05D000390 1.6e-08 63.5 97 45.4
CARHR149770 Cardamine hirsuta HOM05D000028 ORTHO05D000390 2.0e-08 63.2 97 46.4
Cfa007454 Carpinus fangiana HOM05D000028 ORTHO05D000390 2.0e-08 63.2 97 44.3
Hma1.2p1_0697F.1_g204890 Hydrangea macrophylla HOM05D000028 ORTHO05D000390 2.0e-08 63.2 141 37.6
Medtr0103s0090 Medicago truncatula HOM05D000028 ORTHO05D000390 2.0e-08 63.2 97 45.4
BolC9t53305H Brassica oleracea HOM05D000028 ORTHO05D000390 2.7e-08 62.8 98 41.8
Lj1g0025711 Lotus japonicus HOM05D000028 ORTHO05D000390 2.7e-08 62.8 162 32.7
Medtr1g014510 Medicago truncatula HOM05D000028 ORTHO05D000390 2.7e-08 62.8 138 34.1
CiPaw.03G036000 Carya illinoinensis HOM05D000028 ORTHO05D000390 3.5e-08 62.4 97 44.3
ClCG09G018780 Citrullus lanatus HOM05D000028 ORTHO05D000390 3.5e-08 62.4 113 40.7
MELO3C021520.2 Cucumis melo HOM05D000028 ORTHO05D000390 3.5e-08 62.4 113 39.8
Dinv35032 Davidia involucrata HOM05D000028 ORTHO05D000390 3.5e-08 62.4 128 35.2
CiPaw.04G023500 Carya illinoinensis HOM05D000028 ORTHO05D000390 4.5e-08 62.0 133 37.6
FvH4_6g50360 Fragaria vesca HOM05D000028 ORTHO05D000390 4.5e-08 62.0 138 37.0
FAN02G4080 Fragaria x ananassa HOM05D000028 ORTHO05D000390 4.5e-08 62.0 138 37.0
RcHm_v2.0_Chr2g0170721 Rosa chinensis HOM05D000028 ORTHO05D000390 4.5e-08 62.0 146 36.3
Psat6g025840 Pisum sativum HOM05D000028 ORTHO05D000390 5.9e-08 61.6 97 39.2
Prupe.3G280700 Prunus persica HOM05D000028 ORTHO05D000390 5.9e-08 61.6 138 38.4
Lsat_1_v5_gn_0_12601 Lactuca sativa HOM05D000028 ORTHO05D000390 7.7e-08 61.2 96 44.8
MD17G1038300 Malus domestica HOM05D000028 ORTHO05D000390 7.7e-08 61.2 140 35.7
CANSAT64G2657 Cannabis sativa HOM05D000028 ORTHO05D000390 1.0e-07 60.8 180 32.2
Ca_03849_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000390 1.0e-07 60.8 113 39.8
Glyma.19G011600 Glycine max HOM05D000028 ORTHO05D000390 1.0e-07 60.8 138 34.8
Lj7A413T40 Lonicera japonica HOM05D000028 ORTHO05D000390 1.0e-07 60.8 141 34.0
Lj7C412T8 Lonicera japonica HOM05D000028 ORTHO05D000390 1.3e-07 60.5 128 37.5
MD09G1036900 Malus domestica HOM05D000028 ORTHO05D000390 1.3e-07 60.5 140 36.4
Phvul.008G152900 Phaseolus vulgaris HOM05D000028 ORTHO05D000390 1.3e-07 60.5 163 35.0
RcHm_v2.0_Chr2g0170741 Rosa chinensis HOM05D000028 ORTHO05D000390 1.3e-07 60.5 138 36.2
PGR142G4350 Punica granatum HOM05D000028 ORTHO05D000390 1.7e-07 60.1 139 36.7
Eucgr.J00144 Eucalyptus grandis HOM05D000028 ORTHO05D000390 2.2e-07 59.7 131 36.6
FvH4_6g50361 Fragaria vesca HOM05D000028 ORTHO05D000390 2.2e-07 59.7 143 37.1
Lalb_Chr10g0097041 Lupinus albus HOM05D000028 ORTHO05D000390 2.2e-07 59.7 138 31.2
Cc07_g02470 Coffea canephora HOM05D000028 ORTHO05D000390 2.9e-07 59.3 101 46.5
CsaV3_5G037350 Cucumis sativus L. HOM05D000028 ORTHO05D000390 2.9e-07 59.3 113 39.8
FAN05G3616 Fragaria x ananassa HOM05D000028 ORTHO05D000390 2.9e-07 59.3 97 43.3
GSVIVG01032511001 Vitis vinifera HOM05D000028 ORTHO05D000390 2.9e-07 59.3 97 43.3
Medtr6g007740 Medicago truncatula HOM05D000028 ORTHO05D000390 5.0e-07 58.5 113 39.8
Aa31LG9G1460 Aethionema arabicum HOM05D000028 ORTHO05D000390 6.5e-07 58.2 79 51.9
Aqoxy3G00940 Aquilegia oxysepala HOM05D000028 ORTHO05D000390 8.5e-07 57.8 85 45.9
Glyma.13G071300 Glycine max HOM05D000028 ORTHO05D000390 8.5e-07 57.8 138 33.3
arahy.Tifrunner.gnm1.ann1.90R2HL Arachis hypogaea HOM05D000028 ORTHO05D000390 1.1e-06 57.4 97 41.2
arahy.Tifrunner.gnm1.ann1.KB76RH Arachis hypogaea HOM05D000028 ORTHO05D000390 1.1e-06 57.4 97 41.2
BcaB06g27464 Brassica carinata HOM05D000028 ORTHO05D000390 1.1e-06 57.4 95 38.9
CANSAT64G0809 Cannabis sativa HOM05D000028 ORTHO05D000390 1.1e-06 57.4 113 37.2
CANSAT64G1488 Cannabis sativa HOM05D000028 ORTHO05D000390 1.1e-06 57.4 113 37.2
FAN05G1500 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.1e-06 57.4 143 36.4
RcHm_v2.0_Chr2g0170751 Rosa chinensis HOM05D000028 ORTHO05D000390 1.1e-06 57.4 105 40.0
SalBow1G0461 Salvia bowleyana HOM05D000028 ORTHO05D000390 1.1e-06 57.4 151 31.1
VMungo1383G0512 Vigna mungo HOM05D000028 ORTHO05D000390 1.9e-06 56.6 137 33.6
BcaB06g27752 Brassica carinata HOM05D000028 ORTHO05D000390 2.5e-06 56.2 103 38.8
Dinv33515 Davidia involucrata HOM05D000028 ORTHO05D000390 2.5e-06 56.2 97 37.1
Glyma.11G176302 Glycine max HOM05D000028 ORTHO05D000390 2.5e-06 56.2 140 32.1
HanXRQChr17g0547991 Helianthus annuus HOM05D000028 ORTHO05D000390 2.5e-06 56.2 135 35.6
Psat0s3306g0080 Pisum sativum HOM05D000028 ORTHO05D000390 2.5e-06 56.2 116 36.2
VMungo0464G2040 Vigna mungo HOM05D000028 ORTHO05D000390 2.5e-06 56.2 123 36.6
Cfa007453 Carpinus fangiana HOM05D000028 ORTHO05D000390 3.2e-06 55.8 99 39.4
Lj2g0009429 Lotus japonicus HOM05D000028 ORTHO05D000390 3.2e-06 55.8 113 37.2
Duzib187G0806 Durio zibethinus HOM05D000028 ORTHO05D000390 4.2e-06 55.5 138 31.9
ECA246G1073 Erigeron canadensis HOM05D000028 ORTHO05D000390 4.2e-06 55.5 96 42.7
Lalb_Chr10g0092651 Lupinus albus HOM05D000028 ORTHO05D000390 4.2e-06 55.5 139 32.4
Oeu018694.1 Olea europaea HOM05D000028 ORTHO05D000390 4.2e-06 55.5 153 32.0
arahy.Tifrunner.gnm1.ann1.VXG4LQ Arachis hypogaea HOM05D000028 ORTHO05D000390 5.5e-06 55.1 145 31.7
ECA246G0347 Erigeron canadensis HOM05D000028 ORTHO05D000390 5.5e-06 55.1 114 36.0
Glyma.01G077700 Glycine max HOM05D000028 ORTHO05D000390 5.5e-06 55.1 139 33.1
Lalb_Chr05g0226991 Lupinus albus HOM05D000028 ORTHO05D000390 7.2e-06 54.7 104 37.5
Medtr6g007747 Medicago truncatula HOM05D000028 ORTHO05D000390 7.2e-06 54.7 113 38.9
SGA_v2.0_scaffold205G41715 Striga asiatica HOM05D000028 ORTHO05D000390 7.2e-06 54.7 167 29.9
arahy.Tifrunner.gnm1.ann1.BW4FX3 Arachis hypogaea HOM05D000028 ORTHO05D000390 9.4e-06 54.3 119 34.5
Ca_25913_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000390 9.4e-06 54.3 124 34.7
HanXRQChr17g0548171 Helianthus annuus HOM05D000028 ORTHO05D000390 9.4e-06 54.3 122 33.6
PGR142G2605 Punica granatum HOM05D000028 ORTHO05D000390 9.4e-06 54.3 135 32.6
QL02p077283 Quercus lobata HOM05D000028 ORTHO05D000390 9.4e-06 54.3 113 35.4


User provided reference genes

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