Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 5.7e-52 207.2 99 100.0
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 5.7e-52 207.2 99 100.0
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 5.7e-52 207.2 99 100.0
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 2.4e-50 201.8 99 97.0
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 3.1e-50 201.4 99 94.9
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 4.1e-50 201.1 99 97.0
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 9.1e-50 199.9 99 96.0
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 4.5e-49 197.6 99 92.9
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 4.5e-49 197.6 99 92.9
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 4.5e-49 197.6 99 92.9
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 4.5e-49 197.6 99 92.9
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 4.4e-44 181.0 99 83.8
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 3.7e-43 177.9 99 84.8
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 5.4e-42 174.1 99 82.8
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 8.6e-40 166.8 97 80.4
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 1.5e-39 166.0 99 81.8
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.5e-39 165.2 96 80.2
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 2.1e-38 162.2 99 78.8
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 2.8e-38 161.8 95 77.9
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 6.1e-38 160.6 97 78.4
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 8.0e-38 160.2 96 77.1
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 1.4e-37 159.5 97 77.3
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.4e-37 159.5 97 76.3
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 2.3e-37 158.7 102 75.5
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 8.8e-37 156.8 97 76.3
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 8.8e-37 156.8 97 76.3
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 1.2e-36 156.4 97 76.3
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 2.0e-36 155.6 97 75.3
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 2.6e-36 155.2 97 76.3
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 4.4e-36 154.5 96 76.0
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.5e-36 153.7 95 75.8
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 7.5e-36 153.7 95 75.8
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 7.5e-36 153.7 96 72.9
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 9.8e-36 153.3 94 74.5
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 1.7e-35 152.5 95 76.8
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 2.2e-35 152.1 97 75.3
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 2.2e-35 152.1 97 75.3
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 2.2e-35 152.1 97 74.2
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 2.8e-35 151.8 98 74.5
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 2.8e-35 151.8 97 73.2
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 3.7e-35 151.4 95 75.8
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 3.7e-35 151.4 96 71.9
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 3.7e-35 151.4 96 71.9
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 6.3e-35 150.6 94 74.5
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 1.1e-34 149.8 96 75.0
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 1.1e-34 149.8 97 73.2
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 74.2
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 74.2
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 2.4e-34 148.7 97 73.2
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 3.1e-34 148.3 99 72.7
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 3.1e-34 148.3 97 73.2
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 5.4e-34 147.5 95 73.7
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 5.4e-34 147.5 97 71.1
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 7.0e-34 147.1 98 69.4
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 9.2e-34 146.7 97 73.2
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 9.2e-34 146.7 97 73.2
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 1.2e-33 146.4 95 71.6
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.6e-33 146.0 96 70.8
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 73.2
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 73.2
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 2.0e-33 145.6 95 71.6
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 2.0e-33 145.6 95 72.6
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 2.7e-33 145.2 95 72.6
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 2.7e-33 145.2 95 72.6
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 2.7e-33 145.2 97 72.2
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.5e-33 144.8 96 69.8
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 3.5e-33 144.8 96 69.8
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 3.5e-33 144.8 100 69.0
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 4.5e-33 144.4 96 69.8
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 4.5e-33 144.4 96 69.8
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 5.9e-33 144.1 97 68.0
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 7.8e-33 143.7 97 71.1
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.8e-33 143.7 95 71.6
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 1.0e-32 143.3 96 69.8
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 1.0e-32 143.3 97 72.2
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 2.9e-32 141.7 97 72.2
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 3.8e-32 141.4 99 64.6
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 3.8e-32 141.4 96 71.9
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 5.0e-32 141.0 97 70.1
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 6.6e-32 140.6 97 68.0
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 8.6e-32 140.2 97 70.1
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.5e-31 139.4 98 67.3
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.5e-31 139.4 97 70.1
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 2.5e-31 138.7 96 70.8
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 2.5e-31 138.7 104 62.5
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 2.8e-30 135.2 90 71.1
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 2.8e-30 135.2 95 68.4
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 4.7e-30 134.4 97 69.1
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 6.1e-30 134.0 97 69.1
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 1.4e-29 132.9 86 70.9
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.8e-29 132.5 98 66.3
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 2.3e-29 132.1 95 64.2
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 5.2e-29 131.0 99 62.6
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.2e-28 129.8 95 64.2
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 1.5e-28 129.4 97 67.0
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 3.4e-28 128.3 92 65.2
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 5.7e-28 127.5 100 63.0
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 7.5e-28 127.1 99 64.6
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.7e-27 125.9 96 62.5
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 6.4e-27 124.0 99 62.6
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 2.4e-26 122.1 85 67.1
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 4.1e-26 121.3 80 71.2
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 5.4e-26 120.9 99 55.6
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.6e-25 119.4 95 60.0
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.0e-25 119.0 100 59.0
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 4.6e-25 117.9 100 60.0
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 4.6e-25 117.9 97 59.8
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.0e-24 116.7 85 67.1
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.0e-24 116.7 85 67.1
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 1.7e-24 115.9 93 62.4
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 3.0e-24 115.2 89 60.7
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 7.3e-23 110.5 92 58.7
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 1.6e-22 109.4 96 54.2
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.8e-22 108.6 92 59.8
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.8e-22 108.6 93 57.0
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 8.0e-22 107.1 78 65.4
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 1.2e-20 103.2 70 70.0
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 5.8e-20 100.9 88 60.2
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 7.5e-20 100.5 87 62.1
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.3e-19 99.8 99 51.5
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 4.6e-17 91.3 97 54.6
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.1e-15 86.7 97 44.3
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 2.6e-12 75.5 86 43.0
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 1.3e-11 73.2 100 40.0
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 3.7e-11 71.6 91 42.9
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 1.9e-10 69.3 88 39.8
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 2.1e-09 65.9 41 70.7
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 3.9e-08 61.6 57 57.9
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 4.3e-07 58.2 101 38.6


User provided reference genes

Program Settings