Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 5.4e-75 284.3 146 100.0
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 3.5e-74 281.6 146 98.6
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 3.5e-74 281.6 146 98.6
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 3.5e-74 281.6 146 98.6
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 3.5e-74 281.6 146 98.6
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 2.5e-72 275.4 146 97.9
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.2e-71 273.1 146 96.6
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 6.4e-68 260.8 137 97.1
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 1.2e-61 240.0 147 87.8
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 2.2e-60 235.7 139 89.9
BolC9t56919H Brassica oleracea HOM05D001070 ORTHO05D002096 9.3e-59 230.3 139 88.5
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 2.4e-54 215.7 137 84.7
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 2.2e-44 182.6 93 98.9
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 2.9e-44 182.2 93 98.9
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-44 181.4 96 95.8
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-44 181.4 96 95.8
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 4.9e-44 181.4 97 94.8
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.6e-42 174.9 165 66.7
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.6e-42 174.9 165 66.7
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.6e-42 174.9 165 66.7
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.6e-42 174.9 165 66.7
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.6e-42 174.9 165 66.7
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.6e-42 174.9 165 66.7
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.3e-41 172.6 125 76.0
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 3.9e-41 171.8 170 65.9
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 3.1e-38 162.2 169 62.7
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.5e-37 158.3 124 74.2
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.5e-37 158.3 124 74.2
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 3.8e-36 155.2 124 72.6
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-35 152.9 155 64.5
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 3.2e-35 152.1 142 64.8
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 1.0e-33 147.1 142 64.1
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.7e-32 141.4 168 58.3
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 9.7e-32 140.6 168 55.4
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.7e-32 140.6 146 59.6
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.7e-31 139.8 116 70.7
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 6.3e-31 137.9 162 56.2
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 1.8e-30 136.3 160 55.0
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 2.4e-30 136.0 148 57.4
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 2.4e-30 136.0 148 57.4
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 5.3e-30 134.8 86 83.7
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 6.9e-30 134.4 96 74.0
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 6.9e-30 134.4 96 74.0
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.1e-30 134.0 134 61.9
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 1.5e-29 133.3 73 90.4
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 1.5e-29 133.3 73 90.4
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 1.5e-29 133.3 73 90.4
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 1.5e-29 133.3 73 90.4
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 1.5e-29 133.3 73 90.4
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 1.5e-29 133.3 73 90.4
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.5e-29 133.3 166 54.8
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.5e-29 133.3 166 54.8
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-29 132.9 182 52.2
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-29 132.9 182 52.2
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.0e-29 132.9 182 52.2
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-29 132.9 182 52.2
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-29 132.9 182 52.2
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-29 132.9 182 52.2
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.0e-29 132.9 182 52.2
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.4e-29 132.1 133 63.9
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.5e-29 131.7 134 61.9
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-28 129.0 139 59.7
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 5.0e-28 128.3 168 53.6
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.1e-27 127.1 136 58.1
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.1e-27 127.1 136 58.1
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 1.9e-27 126.3 63 100.0
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.5e-27 125.9 140 59.3
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 7.2e-27 124.4 65 95.4
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 7.2e-27 124.4 65 95.4
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 7.2e-27 124.4 84 82.1
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.0e-25 120.6 81 77.8
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.0e-25 120.6 73 84.9
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.0e-25 120.6 73 84.9
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.7e-24 114.0 68 85.3
RcHm_v2.0_Chr4g0392791 Rosa chinensis HOM05D001070 ORTHO05D002096 2.8e-23 112.5 117 59.8
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 4.8e-23 111.7 129 55.8
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 4.8e-23 111.7 129 55.8
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 4.8e-23 111.7 129 55.8
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 1.4e-22 110.2 101 62.4
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 3.1e-22 109.0 169 49.7
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 9.1e-22 107.5 68 82.4
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 9.1e-22 107.5 105 63.8
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-21 106.7 81 72.8
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-21 106.3 111 58.6
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 2.6e-21 105.9 149 50.3
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 2.2e-20 102.8 132 55.3
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 2.9e-20 102.4 120 58.3
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.0e-20 101.7 116 55.2
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 1.1e-19 100.5 144 51.4
CAN.G965.9 Capsicum annuum HOM05D001070 ORTHO05D002096 7.2e-19 97.8 124 54.0
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 2.7e-18 95.9 66 80.3
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.6e-18 95.5 152 52.0
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 1.4e-17 93.6 66 72.7
Oeu010690.1 Olea europaea HOM05D001070 ORTHO05D002096 3.9e-17 92.0 119 52.9
BolC9t56811H Brassica oleracea HOM05D001070 ORTHO05D002096 3.3e-16 89.0 79 69.6
BraSC59t46532Z Brassica rapa HOM05D001070 ORTHO05D002096 2.8e-15 85.9 67 71.6
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 6.3e-15 84.7 41 100.0
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.8e-14 83.2 59 71.2
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-14 82.4 69 66.7
HanXRQChr00c0379g0574331 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-14 82.4 69 66.7
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 3.1e-14 82.4 69 66.7
HanXRQChr11g0321221 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-14 82.4 69 66.7
HanXRQChr11g0333751 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-14 82.4 69 66.7
HanXRQChr15g0465401 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-14 82.4 69 66.7
HanXRQChr15g0465511 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-14 82.4 69 66.7
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-14 82.4 69 66.7
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 3.1e-14 82.4 69 66.7
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 3.1e-14 82.4 69 66.7
Oeu022558.1 Olea europaea HOM05D001070 ORTHO05D002096 3.1e-14 82.4 136 47.1
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 7.0e-14 81.3 49 89.8
BolSC49t61149H Brassica oleracea HOM05D001070 ORTHO05D002096 9.1e-14 80.9 59 76.3
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 9.1e-14 80.9 69 65.2
Solyc11g044680.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.6e-13 80.1 144 44.4
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 3.5e-13 79.0 56 76.8
MBI01_g06564_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D002096 5.9e-13 78.2 100 55.0
Peaxi162Scf00130g00416 Petunia axillaris HOM05D001070 ORTHO05D002096 5.9e-13 78.2 102 53.9
Peaxi162Scf00536g00047 Petunia axillaris HOM05D001070 ORTHO05D002096 5.9e-13 78.2 102 53.9
TAR626G0349 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.0e-12 77.4 116 50.0
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 1.7e-12 76.6 125 46.4
BolC2t10604H Brassica oleracea HOM05D001070 ORTHO05D002096 2.2e-12 76.3 58 72.4
Peaxi162Scf00338g00618 Petunia axillaris HOM05D001070 ORTHO05D002096 2.2e-12 76.3 114 50.0
Sed0002593 Sechium edule HOM05D001070 ORTHO05D002096 2.2e-12 76.3 113 52.2
Sed0025207 Sechium edule HOM05D001070 ORTHO05D002096 2.2e-12 76.3 113 52.2
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 2.9e-12 75.9 107 43.9
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 5.0e-12 75.1 62 59.7
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.5e-12 74.3 100 54.0
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 1.1e-11 73.9 112 50.0
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 1.5e-11 73.6 72 61.1
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-11 72.8 36 97.2
TAR624G0722 Trochodendron aralioides HOM05D001070 ORTHO05D002096 2.5e-11 72.8 113 50.4
CAN.G1045.8 Capsicum annuum HOM05D001070 ORTHO05D002096 3.2e-11 72.4 174 39.1
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 3.2e-11 72.4 112 49.1
Solyc00g500040.1 Solanum lycopersicum HOM05D001070 ORTHO05D013014 4.2e-11 72.0 127 46.5
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 1.2e-10 70.5 70 61.4
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 4.7e-10 68.6 139 37.4
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 1.0e-09 67.4 168 35.1
Nitab4.5_0002628g0020 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.8e-09 66.6 113 47.8
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 2.3e-09 66.2 106 48.1
Hund22091 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-09 66.2 100 42.0
HanXRQChr00c0703g0576891 Helianthus annuus HOM05D001070 ORTHO05D002096 3.0e-09 65.9 60 63.3
Solyc02g011860.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.0e-09 65.9 83 53.0
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.7e-09 64.7 39 87.2
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 1.2e-08 63.9 89 43.8
Gohir.1Z050666 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-08 62.4 50 64.0
Sed0000142 Sechium edule HOM05D001070 ORTHO05D002096 4.4e-08 62.0 116 45.7
Sed0025623 Sechium edule HOM05D001070 ORTHO05D002096 4.4e-08 62.0 116 45.7
Nitab4.5_0000705g0080 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.7e-08 60.8 57 61.4
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 4.8e-07 58.5 106 37.7
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 6.3e-07 58.2 96 46.9
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.1e-06 57.4 66 51.5
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 3.1e-06 55.8 101 47.5
Oeu023335.1 Olea europaea HOM05D001070 ORTHO05D002096 4.1e-06 55.5 51 60.8
Sed0020782 Sechium edule HOM05D001070 ORTHO05D002096 4.1e-06 55.5 53 64.2


User provided reference genes

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