Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 1.6e-115 419.5 221 100.0
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 4.0e-114 414.8 221 99.1
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 9.9e-113 410.2 222 98.6
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 1.6e-110 402.9 220 96.4
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 7.9e-110 400.6 220 95.5
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 1.2e-105 386.7 224 91.5
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 6.0e-102 374.4 224 88.4
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 1.2e-97 360.1 225 86.7
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 2.4e-90 335.9 228 79.8
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 2.5e-84 315.8 231 76.2
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 3.3e-84 315.5 229 77.7
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 9.7e-84 313.9 229 77.3
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 1.5e-81 306.6 227 74.4
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 6.3e-75 284.6 234 69.7
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 8.8e-61 237.7 193 66.3
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 2.8e-59 232.6 196 64.8
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 4.1e-58 228.8 192 63.0
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 1.2e-57 227.3 194 61.9
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.3e-56 223.8 217 55.8
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 5.5e-55 218.4 219 56.6
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 7.2e-55 218.0 220 56.4
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 7.2e-55 218.0 206 59.7
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 9.4e-55 217.6 194 60.3
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 3.6e-54 215.7 191 59.7
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 4.7e-54 215.3 222 55.0
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 6.1e-54 214.9 211 55.5
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 8.0e-54 214.5 191 60.2
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 1.0e-53 214.2 195 59.5
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 1.4e-53 213.8 204 56.4
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.8e-53 213.4 220 55.9
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 2.3e-53 213.0 192 59.9
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 3.0e-53 212.6 194 57.2
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 3.0e-53 212.6 193 60.1
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 3.0e-53 212.6 191 59.2
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 5.2e-53 211.8 219 54.3
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 8.8e-53 211.1 221 53.8
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 1.2e-52 210.7 197 59.9
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.2e-52 210.7 222 54.5
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.5e-52 210.3 207 55.6
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 1.5e-52 210.3 193 60.1
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 2.0e-52 209.9 213 52.6
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 2.0e-52 209.9 194 61.9
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.0e-52 209.9 232 53.4
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 2.0e-52 209.9 216 54.2
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 3.4e-52 209.1 194 58.8
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 3.4e-52 209.1 194 58.8
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 4.4e-52 208.8 216 53.7
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 5.7e-52 208.4 210 54.8
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 5.7e-52 208.4 193 59.6
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 7.5e-52 208.0 192 58.9
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 7.5e-52 208.0 190 56.8
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 9.8e-52 207.6 221 50.7
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 2.2e-51 206.5 197 58.4
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 4.8e-51 205.3 216 55.6
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 6.3e-51 204.9 223 52.5
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 8.3e-51 204.5 193 56.0
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 1.1e-50 204.1 241 51.9
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 1.1e-50 204.1 220 55.5
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 4.1e-50 202.2 169 63.3
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 5.4e-50 201.8 163 62.0
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 9.1e-50 201.1 187 57.8
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 9.1e-50 201.1 191 56.0
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 1.2e-49 200.7 191 56.0
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 1.6e-49 200.3 203 53.2
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 5.9e-49 198.4 228 51.8
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 5.9e-49 198.4 191 55.0
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 1.7e-48 196.8 217 52.1
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 8.5e-48 194.5 178 60.7
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 2.5e-47 193.0 215 50.7
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 2.1e-46 189.9 194 52.6
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 2.7e-46 189.5 161 61.5
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 3.6e-46 189.1 204 51.0
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 3.6e-46 189.1 183 57.9
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 4.7e-46 188.7 204 50.5
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 8.0e-46 188.0 188 57.4
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 1.4e-45 187.2 262 47.3
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 1.8e-45 186.8 167 58.1
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 3.0e-45 186.0 197 53.3
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.4e-42 177.2 165 58.2
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 1.6e-41 173.7 174 52.9
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 2.9e-40 169.5 223 44.4
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 5.0e-40 168.7 210 47.1
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 2.1e-38 163.3 218 44.5
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.0e-37 161.0 185 50.3
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 3.0e-37 159.5 143 62.9
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 3.0e-37 159.5 184 50.0
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 4.0e-37 159.1 141 61.0
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 6.8e-37 158.3 195 46.2
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 7.0e-34 148.3 196 43.9
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.0e-32 144.4 198 46.5
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 5.0e-32 142.1 190 45.8
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.9e-31 140.2 219 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 9.5e-31 137.9 171 43.3
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 9.5e-31 137.9 121 57.0
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 1.4e-29 134.0 202 42.6
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 3.1e-29 132.9 134 52.2
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 7.8e-25 118.2 135 48.9
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 4.7e-22 109.0 103 55.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.8e-21 107.1 88 62.5
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 2.9e-19 99.8 118 48.3
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 8.3e-19 98.2 236 32.6
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 7.1e-18 95.1 88 55.7
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.7e-16 90.5 73 58.9
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 3.3e-15 86.3 109 45.0
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 9.2e-10 68.2 89 46.1
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 4.7e-06 55.8 47 57.4


User provided reference genes

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