Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 0.0e+00 1566.6 815 100.0
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 0.0e+00 1540.0 815 98.7
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 0.0e+00 1529.2 816 97.8
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 0.0e+00 1521.5 817 97.6
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 0.0e+00 1505.0 826 96.4
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 0.0e+00 1287.3 826 83.4
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 0.0e+00 1122.5 849 74.4
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.7e-293 1011.9 858 68.3
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 7.0e-281 970.7 868 68.0
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 9.2e-265 917.1 862 65.7
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 1.7e-255 886.3 852 64.0
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 8.1e-253 877.5 854 62.9
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 2.1e-168 597.0 888 47.2
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 5.7e-166 589.0 1045 42.6
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.3e-101 375.2 890 35.7
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 7.9e-99 365.9 1039 33.0
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 3.7e-96 357.1 1092 31.3
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 7.7e-94 349.4 1088 31.1
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.2e-93 347.8 1090 31.7
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 4.2e-92 343.6 1097 29.6
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 7.2e-92 342.8 959 33.3
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 2.1e-91 341.3 1084 31.2
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 6.1e-91 339.7 1089 31.8
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 7.9e-91 339.3 1092 30.4
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 1.1e-89 335.5 1090 29.9
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 2.0e-89 334.7 971 33.3
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 5.7e-89 333.2 1095 30.4
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.8e-88 330.9 1086 30.8
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.2e-88 329.3 1088 30.5
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 8.2e-88 329.3 1090 30.7
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 1.4e-87 328.6 1087 30.7
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.8e-87 328.2 1085 30.4
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 3.4e-86 323.9 1015 30.6
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 7.7e-86 322.8 1095 30.7
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 1.7e-85 321.6 1020 31.0
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 1.9e-84 318.2 973 31.0
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 2.5e-84 317.8 1033 31.1
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 4.2e-84 317.0 1097 28.5
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 9.7e-81 305.8 980 30.3
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 6.3e-80 303.1 966 30.3
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.1e-79 302.4 1079 29.4
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.4e-79 302.0 990 29.8
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.1e-79 300.8 1068 29.6
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 7.0e-79 299.7 1061 29.6
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 2.0e-78 298.1 1011 30.6
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 1.9e-76 291.6 958 31.7
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.6e-75 288.5 1019 29.3
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.0e-74 285.8 1030 29.1
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 1.1e-73 282.3 1017 29.6
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.3e-73 280.8 880 31.4
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 3.3e-73 280.8 883 30.7
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 3.3e-73 280.8 1039 29.5
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 9.7e-73 279.3 1059 30.4
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.7e-72 278.5 1030 29.4
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.8e-71 275.0 1052 28.8
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.8e-71 275.0 1019 29.4
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 3.1e-71 274.2 1096 27.6
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.1e-71 274.2 995 30.2
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 3.1e-71 274.2 1039 29.5
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 9.1e-71 272.7 1066 28.4
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 9.1e-71 272.7 1075 29.7
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.2e-70 272.3 1097 28.3
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 2.0e-70 271.6 1071 27.6
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 5.9e-70 270.0 934 29.4
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 5.9e-70 270.0 1067 28.6
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 1.7e-69 268.5 1099 27.0
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 8.5e-69 266.2 909 30.6
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.1e-68 265.8 1065 28.6
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.9e-68 265.0 1022 29.5
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 3.2e-68 264.2 1026 29.1
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 4.2e-68 263.8 919 31.7
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 7.2e-68 263.1 1101 27.0
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 7.2e-68 263.1 1069 28.0
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 4.7e-67 260.4 1020 28.3
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 4.0e-66 257.3 1062 28.8
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 6.3e-64 250.0 1029 27.8
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 2.4e-63 248.1 878 29.7
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.6e-62 245.4 1024 29.8
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.7e-62 244.6 1047 26.7
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 4.5e-62 243.8 1088 27.6
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.7e-61 241.9 884 30.7
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 3.2e-60 237.7 1050 26.2
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 2.1e-59 235.0 1006 26.6
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 3.7e-56 224.2 968 25.5
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 2.4e-55 221.5 1075 26.3
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 2.7e-54 218.0 998 26.5
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 7.7e-54 216.5 894 27.5
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 2.3e-53 214.9 1054 26.7
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 3.8e-53 214.2 910 26.5
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 6.6e-53 213.4 1015 27.1
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 1.9e-52 211.8 231 50.2
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 4.3e-52 210.7 830 26.5
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.2e-49 202.6 938 28.7
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 7.5e-49 199.9 820 28.5
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 4.3e-44 184.1 1037 25.7
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 3.6e-43 181.0 194 50.0
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.4e-42 179.1 894 28.0
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.9e-40 171.4 451 34.4
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 6.4e-40 170.2 586 30.5
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.2e-38 166.0 732 28.1
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 1.1e-34 152.9 118 61.0
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 4.0e-34 151.0 616 27.9
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.1e-31 142.9 144 54.2
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 5.4e-31 140.6 366 35.2
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.2e-30 139.4 490 31.0
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.2e-25 122.9 534 27.3
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 6.4e-24 117.1 626 24.6
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.8e-18 99.0 1007 20.4
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 3.1e-18 98.2 375 30.4
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 3.1e-18 98.2 956 21.9
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 4.4e-17 94.4 944 22.7
C04p25240 Brassica napus HOM05D006788 ORTHO05D008265 7.6e-17 93.6 174 42.0
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.9e-16 91.7 180 31.1
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 3.5e-14 84.7 172 29.7
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.9e-13 81.3 178 32.6
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 8.7e-13 80.1 166 30.1
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.5e-12 79.3 781 22.9
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.5e-12 79.3 189 29.6
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 3.6e-11 74.7 405 23.2
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 6.2e-11 73.9 166 30.1
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.1e-10 73.2 171 29.8
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.8e-10 72.4 172 33.7
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.0e-10 71.2 869 22.7
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-09 69.7 710 24.5
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.0e-09 68.9 718 23.4
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.3e-08 66.2 221 31.7
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 2.9e-08 65.1 710 21.0
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 6.4e-08 63.9 165 29.1
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 8.4e-08 63.5 475 24.0
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 1.1e-07 63.2 851 20.8
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 1.4e-07 62.8 772 20.9
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.2e-07 61.6 174 28.7
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 3.2e-07 61.6 760 21.2
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-06 59.7 444 22.1
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.6e-06 59.3 464 21.6
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 7.9e-06 57.0 183 26.8


User provided reference genes

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