Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 6.6e-146 520.8 280 100.0
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 8.1e-144 513.8 280 99.6
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 4.9e-133 478.0 280 87.9
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 6.4e-133 477.6 280 90.0
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.5e-129 465.7 294 84.4
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-113 411.8 285 75.4
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-113 411.8 285 75.4
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.9e-99 364.4 320 62.8
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.5e-84 316.2 283 62.2
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 8.2e-80 301.2 294 56.8
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 1.4e-79 300.4 308 55.2
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.1e-76 290.8 326 49.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.4e-63 247.3 273 48.4
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 3.1e-63 246.1 289 48.1
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.1e-60 237.7 280 45.7
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.2e-60 236.1 316 49.1
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 8.0e-59 231.5 294 45.9
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 7.5e-57 224.9 287 44.3
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.2e-56 223.4 300 49.3
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 3.5e-54 216.1 292 49.3
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 4.5e-54 215.7 292 49.3
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.5e-52 210.7 291 42.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 4.9e-48 195.7 303 41.9
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.1e-47 194.5 270 44.8
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-44 183.7 173 52.0
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.9e-44 183.7 173 52.0
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.6e-43 180.6 173 51.4
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 2.1e-43 180.3 175 50.3
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-41 173.7 173 50.3
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.6e-41 173.3 198 46.0
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 5.8e-41 172.2 189 46.0
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 4.9e-40 169.1 198 45.5
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-39 167.5 262 46.9
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.9e-39 167.2 192 45.3
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.9e-39 167.2 192 45.3
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 2.4e-39 166.8 260 47.3
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 2.4e-39 166.8 260 47.3
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 4.1e-39 166.0 196 46.9
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 9.2e-39 164.9 197 46.7
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 9.2e-39 164.9 359 31.8
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 1.2e-38 164.5 360 32.5
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.5e-38 162.9 261 46.4
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 6.0e-38 162.2 190 45.8
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 6.0e-38 162.2 193 46.1
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 7.8e-38 161.8 198 44.4
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.3e-37 161.0 222 40.1
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.7e-37 160.6 197 43.1
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 3.0e-37 159.8 199 45.2
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 3.9e-37 159.5 202 46.0
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 6.6e-37 158.7 310 34.8
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 8.6e-37 158.3 193 47.2
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 8.6e-37 158.3 216 43.5
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.5e-36 156.8 197 42.1
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.5e-36 156.8 322 34.5
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 3.3e-36 156.4 203 44.8
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 3.3e-36 156.4 327 33.6
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.3e-36 156.0 322 33.9
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 5.6e-36 155.6 193 44.6
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 5.6e-36 155.6 200 43.0
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 9.5e-36 154.8 173 45.1
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 9.5e-36 154.8 201 41.8
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-35 154.5 322 34.2
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.6e-35 154.1 194 43.3
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 2.8e-35 153.3 202 44.6
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.8e-35 153.3 190 44.2
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.6e-35 152.9 196 41.3
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.6e-35 152.9 176 47.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 3.6e-35 152.9 189 44.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.2e-35 152.1 197 45.2
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 6.2e-35 152.1 328 32.3
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 2.3e-34 150.2 325 32.3
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 2.3e-34 150.2 324 31.8
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.3e-34 150.2 179 45.3
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 3.1e-34 149.8 193 43.0
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 4.0e-34 149.4 203 42.9
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 5.2e-34 149.1 323 33.1
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 6.8e-34 148.7 198 41.9
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 6.8e-34 148.7 225 40.4
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 8.9e-34 148.3 227 42.3
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.2e-33 147.9 200 42.5
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.2e-33 147.9 351 31.3
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.2e-33 147.9 209 41.6
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.5e-33 147.5 197 40.6
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 2.6e-33 146.7 303 33.3
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 4.4e-33 146.0 192 43.8
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 4.4e-33 146.0 200 42.5
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 5.8e-33 145.6 192 43.8
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 5.8e-33 145.6 321 31.5
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 9.8e-33 144.8 201 40.3
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.8e-33 144.8 197 39.6
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 9.8e-33 144.8 202 41.6
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.7e-32 144.1 179 41.3
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.9e-32 143.3 191 42.4
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 3.7e-32 142.9 207 39.6
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.7e-32 142.9 195 39.0
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 4.9e-32 142.5 321 33.0
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 6.4e-32 142.1 219 40.6
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 6.4e-32 142.1 189 41.8
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.1e-31 141.4 196 40.3
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-31 141.0 195 40.0
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.4e-31 141.0 203 39.9
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-31 140.6 195 39.5
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 3.2e-31 139.8 212 37.7
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.2e-31 139.8 171 44.4
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.4e-31 139.0 226 36.7
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 9.2e-31 138.3 199 38.7
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.6e-30 137.5 260 35.0
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 4.6e-30 136.0 196 41.8
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 7.8e-30 135.2 182 39.0
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.0e-29 134.8 205 38.5
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 3.0e-29 133.3 204 37.7
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 3.9e-29 132.9 190 40.0
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 6.6e-29 132.1 190 40.5
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 6.6e-29 132.1 200 35.0
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-28 131.3 212 37.7
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.5e-28 131.0 195 37.9
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.5e-28 130.2 172 43.0
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 3.3e-28 129.8 175 38.3
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.3e-28 129.8 216 37.0
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 5.6e-28 129.0 180 40.0
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 6.2e-27 125.6 190 35.8
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-26 124.8 162 43.2
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.4e-26 124.4 431 26.2
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.3e-26 123.6 200 36.5
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 8.9e-26 121.7 171 39.8
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 3.4e-25 119.8 289 30.8
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 5.8e-25 119.0 261 28.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 4.9e-24 115.9 217 35.0
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 6.4e-24 115.5 165 40.6
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.9e-23 114.0 182 35.2
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 3.2e-23 113.2 266 31.6
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 7.1e-23 112.1 246 32.9
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.2e-22 111.3 181 38.7
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 1.2e-22 111.3 209 35.4
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 6.0e-22 109.0 209 35.4
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.3e-21 107.8 446 23.1
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.7e-21 107.5 171 39.2
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 8.6e-21 105.1 153 41.2
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 8.6e-21 105.1 153 41.2
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 3.3e-20 103.2 88 53.4
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 3.6e-19 99.8 160 39.4
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 4.0e-18 96.3 74 55.4
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.0e-18 96.3 75 57.3
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 5.2e-18 95.9 122 41.8
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 6.8e-18 95.5 149 37.6
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.5e-17 94.4 325 28.3
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 2.0e-17 94.0 167 37.1
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.6e-17 92.0 90 46.7
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.9e-16 89.4 170 30.6
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.4e-15 87.8 74 52.7
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.2e-14 84.7 139 36.7
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 7.8e-14 82.0 199 28.6
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.0e-13 81.6 136 39.0
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 3.0e-13 80.1 122 38.5
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.6e-11 74.3 137 33.6
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 2.6e-09 67.0 143 33.6
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 1.7e-08 64.3 192 28.1
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.2e-07 59.7 57 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 7.1e-07 58.9 137 29.9
SHI00611 Sapria himalayana HOM05D003860 ORTHO05D004218 3.5e-06 56.6 41 56.1
BolC3t14251H Brassica oleracea HOM05D003860 ORTHO05D004218 4.6e-06 56.2 43 55.8
SEGI_19572 Sequoiadendron giganteum HOM05D001580 ORTHO05D001517 6.0e-06 55.8 167 28.1


User provided reference genes

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