Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 4.6e-255 884.0 430 100.0
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 4.6e-255 884.0 430 100.0
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 7.3e-253 876.7 430 99.1
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.2e-252 875.9 430 99.1
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 5.4e-240 833.9 431 95.4
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.4e-219 765.4 431 88.4
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 3.8e-217 758.1 423 88.2
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 6.4e-217 757.3 423 87.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 8.4e-217 756.9 423 87.2
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 3.2e-216 755.0 419 88.1
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 4.5e-210 734.6 436 83.5
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.3e-206 723.0 426 83.8
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 2.0e-186 656.0 428 75.5
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.2e-184 648.7 417 75.1
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.2e-184 647.5 408 75.5
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 9.4e-184 647.1 414 75.6
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.6e-183 646.4 417 74.3
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.6e-183 646.4 403 76.4
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 3.6e-183 645.2 403 76.2
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 6.7e-182 641.0 400 77.0
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.4e-181 637.5 402 75.6
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 9.7e-181 637.1 414 74.9
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.3e-180 636.7 402 75.6
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.2e-180 636.0 429 72.7
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.2e-180 636.0 402 75.4
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.1e-179 633.6 427 73.3
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 2.4e-179 632.5 398 76.4
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.0e-178 629.4 402 75.1
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.6e-178 629.0 434 70.3
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 4.5e-178 628.2 341 89.7
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.5e-178 628.2 425 70.8
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.0e-177 627.1 419 72.3
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.7e-177 626.3 425 70.4
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.7e-177 626.3 428 71.3
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 3.8e-177 625.2 419 72.1
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 6.5e-177 624.4 415 72.5
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 8.5e-177 624.0 417 72.9
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 8.5e-177 624.0 417 71.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.4e-176 623.2 429 70.6
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 7.2e-176 620.9 387 76.5
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 9.4e-176 620.5 425 70.1
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.2e-175 620.2 425 70.4
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 8.0e-175 617.5 409 73.6
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.8e-174 616.3 402 73.4
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.8e-174 616.3 417 71.2
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.3e-174 615.9 439 68.6
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 2.3e-174 615.9 430 69.5
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 8.8e-174 614.0 437 68.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 9.7e-173 610.5 393 74.6
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.7e-172 609.8 387 74.7
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 2.2e-172 609.4 416 70.2
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.7e-172 608.6 403 73.2
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 6.3e-172 607.8 399 72.9
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.1e-171 605.1 419 70.9
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 2.0e-170 602.8 417 71.0
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.5e-170 602.1 417 70.3
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 4.5e-170 601.7 408 71.6
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 4.5e-170 601.7 422 68.0
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.7e-169 599.7 404 71.0
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 5.0e-169 598.2 393 72.3
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 5.0e-169 598.2 393 72.3
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.1e-168 597.0 418 69.4
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.5e-168 595.9 416 70.0
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 3.2e-168 595.5 393 71.5
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 3.2e-168 595.5 392 73.0
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 9.4e-168 594.0 396 72.5
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.4e-166 590.1 432 67.8
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.3e-166 589.3 413 68.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.3e-166 589.3 410 69.5
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.2e-165 587.0 406 70.4
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.5e-165 586.6 432 67.6
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.0e-165 586.3 417 68.8
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 3.3e-165 585.5 425 68.2
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.3e-164 583.6 391 71.9
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 2.8e-164 582.4 388 70.4
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.8e-163 579.7 412 69.9
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 4.1e-163 578.6 417 67.6
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 5.3e-163 578.2 425 66.1
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 7.0e-163 577.8 412 69.7
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.6e-162 576.6 401 68.6
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.0e-161 573.9 432 65.5
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.1e-160 570.5 414 67.9
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.5e-160 570.1 435 64.4
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.9e-160 569.7 385 70.4
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 4.2e-160 568.5 403 67.7
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.2e-159 567.0 381 71.9
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 3.6e-159 565.5 477 61.0
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 2.3e-158 562.8 409 67.2
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 6.8e-158 561.2 450 63.6
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.7e-156 555.4 376 69.4
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.1e-155 552.4 410 65.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.0e-154 549.7 423 61.7
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.9e-152 543.1 340 75.6
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 2.6e-149 532.7 380 68.2
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.2e-148 529.6 410 63.2
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 3.1e-147 525.8 354 69.8
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.6e-146 523.5 382 67.5
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 7.8e-146 521.2 428 59.3
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 5.0e-145 518.5 436 60.3
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 2.9e-140 502.7 402 60.9
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 7.8e-138 494.6 411 58.9
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 3.9e-137 492.3 387 62.3
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 8.0e-135 484.6 339 69.6
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 7.5e-133 478.0 419 57.5
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 4.9e-132 475.3 396 57.6
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.2e-130 470.7 318 68.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.0e-129 467.6 388 58.5
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.7e-129 466.8 399 57.4
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.0e-129 466.1 318 67.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 5.1e-129 465.3 286 75.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.3e-128 461.5 318 67.0
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.8e-126 456.8 299 72.2
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 4.4e-125 452.2 449 54.3
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.7e-121 440.3 279 75.3
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.2e-119 434.1 236 91.1
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 8.1e-111 404.8 251 76.1
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 5.8e-109 398.7 253 75.1
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 6.2e-103 378.6 328 56.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 4.0e-102 375.9 324 54.3
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 1.6e-95 354.0 178 95.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.8e-94 350.5 403 45.9
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.6e-93 346.7 172 100.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.3e-89 334.3 204 73.0
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.8e-89 334.0 279 57.7
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.6e-74 283.1 320 42.8
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.4e-70 271.2 191 64.4
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 2.2e-68 263.8 227 57.3
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 4.7e-66 256.1 252 49.2
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.9e-66 255.4 209 57.4
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.1e-54 218.4 155 70.3
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-42 178.3 115 67.0
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 6.3e-39 166.0 123 55.3
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 4.5e-37 159.8 140 50.0
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 3.3e-35 153.7 152 57.9
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 2.6e-32 144.1 176 44.3
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 4.1e-30 136.7 158 50.6
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 9.2e-30 135.6 413 26.2
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.7e-28 131.3 110 57.3
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.3e-25 120.9 294 29.9
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 4.6e-21 106.7 80 63.8
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.0e-20 105.5 63 71.4
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 9.8e-16 89.0 58 69.0
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.6e-13 81.6 51 70.6
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 1.9e-11 74.7 81 53.1
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 1.9e-11 74.7 81 53.1
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.1e-10 69.3 54 59.3


User provided reference genes

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