Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 1.5e-178 629.4 309 100.0
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 1.5e-178 629.4 309 100.0
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 1.5e-178 629.4 309 100.0
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 2.1e-161 572.4 283 98.9
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 9.5e-138 493.8 285 86.3
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 8.1e-137 490.7 277 88.8
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 7.3e-130 467.6 287 82.2
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 2.1e-124 449.5 284 80.3
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 4.6e-124 448.4 291 79.7
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 9.6e-122 440.7 286 79.7
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 4.2e-117 425.2 293 73.4
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 1.2e-116 423.7 299 72.9
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 4.0e-112 408.7 294 74.1
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 1.1e-96 357.5 239 74.1
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 1.2e-95 354.0 277 65.0
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 2.0e-95 353.2 273 66.3
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 5.8e-95 351.7 278 65.1
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 5.0e-94 348.6 273 65.6
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 1.4e-93 347.1 272 65.1
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 1.6e-92 343.6 289 57.8
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 2.1e-92 343.2 276 64.1
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 2.1e-92 343.2 256 66.8
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 2.7e-92 342.8 268 66.4
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 6.1e-92 341.7 276 61.6
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 1.0e-91 340.9 273 61.9
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 1.3e-91 340.5 268 65.3
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 2.3e-91 339.7 235 72.3
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 2.3e-91 339.7 220 74.5
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 3.0e-91 339.3 288 61.1
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 5.1e-91 338.6 307 59.9
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 8.7e-91 337.8 274 63.1
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 1.5e-90 337.0 285 61.1
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 3.3e-90 335.9 265 64.9
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 3.3e-90 335.9 275 62.9
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 4.3e-90 335.5 282 61.0
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 5.7e-90 335.1 187 81.8
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 7.4e-90 334.7 256 65.2
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 1.6e-89 333.6 230 71.3
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 1.1e-88 330.9 279 59.9
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 1.1e-88 330.9 191 81.2
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 2.4e-88 329.7 271 62.7
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 4.1e-88 328.9 273 60.8
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 5.3e-88 328.6 194 77.3
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 5.3e-88 328.6 211 72.5
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 5.3e-88 328.6 211 72.5
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 1.2e-87 327.4 309 57.9
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 2.0e-87 326.6 192 77.1
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 2.0e-87 326.6 278 59.0
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 4.5e-87 325.5 218 72.0
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 5.9e-87 325.1 281 61.2
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 7.7e-87 324.7 194 77.8
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 7.7e-87 324.7 271 61.3
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 7.7e-87 324.7 273 62.3
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 2.5e-85 319.7 282 59.6
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 3.2e-85 319.3 215 71.6
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 4.2e-85 318.9 207 72.0
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 7.2e-85 318.2 187 79.1
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 9.4e-85 317.8 286 58.4
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 9.4e-85 317.8 187 78.1
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 9.4e-85 317.8 187 77.5
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 2.7e-84 316.2 210 71.0
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 3.6e-84 315.8 315 56.2
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 6.1e-84 315.1 278 60.8
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.0e-83 314.3 270 58.5
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 2.3e-83 313.2 182 79.7
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 6.7e-83 311.6 186 78.5
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 1.1e-82 310.8 184 78.3
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 1.1e-82 310.8 183 79.8
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 1.5e-82 310.5 188 78.7
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 1.5e-82 310.5 207 72.0
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 3.3e-82 309.3 184 77.7
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 7.4e-82 308.1 194 71.6
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 3.7e-81 305.8 188 77.1
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 8.2e-81 304.7 197 73.1
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 1.5e-79 300.4 203 67.5
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.9e-77 293.5 199 67.8
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 5.5e-77 292.0 171 78.4
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.4e-75 287.3 242 60.7
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 5.1e-75 285.4 263 57.0
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 2.6e-74 283.1 166 78.9
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 1.7e-73 280.4 246 59.3
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 7.0e-72 275.0 165 77.6
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 1.0e-70 271.2 161 78.9
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 1.1e-69 267.7 156 78.2
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 4.2e-69 265.8 218 61.5
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 6.1e-68 261.9 156 78.2
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 1.0e-67 261.2 210 60.0
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 2.6e-66 256.5 179 69.3
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 7.0e-64 248.4 286 50.3
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 3.8e-62 242.7 180 65.6
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 6.5e-62 241.9 148 77.0
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 9.4e-61 238.0 157 72.6
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 3.4e-58 229.6 166 65.7
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 9.8e-58 228.0 231 49.4
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 2.4e-56 223.4 208 52.4
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 3.1e-56 223.0 184 56.0
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 3.5e-55 219.5 198 53.5
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 3.6e-52 209.5 143 71.3
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 8.0e-52 208.4 152 63.8
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 2.0e-50 203.8 188 58.5
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 7.0e-48 195.3 176 58.5
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 7.0e-48 195.3 186 48.4
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 3.8e-46 189.5 138 65.9
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 2.8e-44 183.3 172 55.8
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 2.6e-42 176.8 197 48.7
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 8.3e-41 171.8 244 40.2
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.4e-40 171.0 280 38.2
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 6.6e-38 162.2 112 68.8
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 3.6e-36 156.4 218 43.1
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 4.7e-36 156.0 98 72.4
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 1.8e-35 154.1 168 48.2
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 2.0e-34 150.6 176 44.9
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 5.1e-22 109.4 76 69.7
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 5.2e-11 72.8 42 76.2
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 2.7e-07 60.5 59 45.8
CSS0026826 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 3.0e-06 57.0 50 52.0


User provided reference genes

Program Settings