Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 7.6e-19 96.3 53 100.0
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 9.9e-19 95.9 52 100.0
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 3.8e-18 94.0 51 100.0
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 4.9e-18 93.6 52 98.1
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 6.4e-18 93.2 52 96.2
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 6.4e-18 93.2 52 96.2
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 6.4e-18 93.2 52 96.2
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 2.4e-17 91.3 52 96.2
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 2.4e-17 91.3 53 98.1
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 4.2e-17 90.5 51 98.0
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.2e-16 89.0 52 90.4
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.2e-16 89.0 52 90.4
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.2e-16 89.0 52 90.4
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 1.6e-16 88.6 52 90.4
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 1.6e-16 88.6 52 90.4
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 1.6e-16 88.6 52 90.4
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 1.6e-16 88.6 52 90.4
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-16 88.2 52 88.5
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 2.1e-16 88.2 52 88.5
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-16 88.2 52 88.5
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 2.7e-16 87.8 52 88.5
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.7e-16 87.8 52 88.5
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 3.5e-16 87.4 52 88.5
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 3.5e-16 87.4 52 88.5
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 3.5e-16 87.4 52 88.5
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.5e-16 87.4 52 88.5
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 3.5e-16 87.4 52 88.5
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 3.5e-16 87.4 52 88.5
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 3.5e-16 87.4 52 88.5
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 4.6e-16 87.0 52 86.5
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 4.6e-16 87.0 52 86.5
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 4.6e-16 87.0 52 86.5
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 4.6e-16 87.0 52 86.5
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 6.0e-16 86.7 52 86.5
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.0e-15 85.9 52 84.6
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.0e-15 85.9 52 84.6
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 1.0e-15 85.9 52 86.5
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 2.3e-15 84.7 52 84.6
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.3e-15 84.7 52 84.6
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.3e-15 84.7 52 84.6
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 2.3e-15 84.7 52 86.5
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 3.0e-15 84.3 52 84.6
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 5.1e-15 83.6 52 82.7
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 5.1e-15 83.6 52 84.6
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 6.7e-15 83.2 52 86.5
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.7e-15 83.2 52 82.7
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 6.7e-15 83.2 52 86.5
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.7e-15 82.8 52 84.6
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 8.7e-15 82.8 52 80.8
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.9e-14 81.6 52 80.8
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.5e-14 81.3 52 84.6
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.5e-14 81.3 52 84.6
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.5e-14 81.3 52 84.6
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 4.3e-14 80.5 52 80.8
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 5.6e-14 80.1 52 82.7
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 5.6e-14 80.1 52 82.7
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 5.6e-14 80.1 52 75.0
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 2.8e-13 77.8 52 82.7
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 2.8e-13 77.8 52 82.7
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 2.8e-13 77.8 52 80.8
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.7e-13 77.4 52 80.8
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 6.2e-13 76.6 44 88.6
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 3.1e-12 74.3 52 76.9
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 1.2e-11 72.4 52 78.8
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 4.5e-11 70.5 52 73.1
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 4.9e-10 67.0 43 76.7
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 2.1e-08 61.6 41 73.2
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 6.0e-08 60.1 41 80.5
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 3.0e-07 57.8 52 69.2


User provided reference genes

Program Settings