Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p24450 Brassica napus HOM05D003561 ORTHO05D004351 3.3e-64 248.4 144 100.0
C02p58430 Brassica napus HOM05D003561 ORTHO05D004351 7.8e-58 227.3 143 93.7
BcaC03g17819 Brassica carinata HOM05D003561 ORTHO05D004351 2.8e-55 218.8 151 87.4
BolC9t55360H Brassica oleracea HOM05D003561 ORTHO05D004351 5.2e-46 188.0 200 64.0
BolC2t11906H Brassica oleracea HOM05D003561 ORTHO05D004351 5.8e-45 184.5 200 64.5
BolC3t20255H Brassica oleracea HOM05D003561 ORTHO05D004351 1.7e-41 172.9 200 60.5
C02p15790 Brassica napus HOM05D003561 ORTHO05D004351 3.9e-41 171.8 200 61.5
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.7e-36 156.4 166 56.0
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.7e-36 156.4 166 56.0
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 6.4e-36 154.5 166 55.4
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 6.4e-36 154.5 166 55.4
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 6.4e-36 154.5 166 55.4
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 5.4e-35 151.4 166 53.0
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 3.9e-33 145.2 72 97.2
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 2.6e-29 132.5 166 47.6
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 1.9e-27 126.3 166 46.4
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 2.4e-27 125.9 167 46.7
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 3.0e-25 119.0 166 44.0
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 1.1e-24 117.1 166 43.4
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 2.5e-24 115.9 166 43.4
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 2.1e-23 112.8 165 41.8
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 5.6e-16 88.2 97 46.4
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 2.9e-12 75.9 124 37.1
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 1.6e-10 70.1 67 50.7
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.7e-10 69.3 103 38.8
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.7e-10 69.3 73 47.9
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.7e-10 69.3 73 49.3
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 2.7e-10 69.3 73 47.9
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 4.6e-10 68.6 64 50.0
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 6.0e-10 68.2 97 38.1
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.3e-09 67.0 62 53.2
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 3.9e-09 65.5 103 36.9
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 8.7e-09 64.3 103 36.9
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.5e-08 63.5 73 39.7
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.9e-08 63.2 67 46.3
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.9e-08 63.2 173 28.3
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 3.3e-08 62.4 64 42.2
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 3.3e-08 62.4 67 47.8
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 3.3e-08 62.4 90 40.0
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 3.3e-08 62.4 64 39.1
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 4.3e-08 62.0 69 44.9
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 4.3e-08 62.0 69 44.9
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 4.3e-08 62.0 73 39.7
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 4.3e-08 62.0 73 42.5
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 5.6e-08 61.6 71 43.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 5.6e-08 61.6 64 43.8
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 5.6e-08 61.6 73 41.1
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 7.4e-08 61.2 204 25.5
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.4e-08 61.2 67 43.3
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 7.4e-08 61.2 73 42.5
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 9.6e-08 60.8 64 39.1
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 9.6e-08 60.8 64 39.1
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 9.6e-08 60.8 67 44.8
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 9.6e-08 60.8 73 42.5
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.3e-07 60.5 67 43.3
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.3e-07 60.5 67 43.3
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.3e-07 60.5 67 43.3
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 1.6e-07 60.1 67 43.3
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 2.1e-07 59.7 73 38.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 2.1e-07 59.7 67 43.3
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 2.8e-07 59.3 70 35.7
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.8e-07 59.3 67 43.3
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 3.7e-07 58.9 71 40.8
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 3.7e-07 58.9 71 40.8
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 4.8e-07 58.5 73 42.5
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.8e-07 58.5 73 42.5
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 4.8e-07 58.5 64 42.2
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 6.2e-07 58.2 64 39.1
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 6.2e-07 58.2 73 41.1
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 6.2e-07 58.2 73 39.7
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 8.1e-07 57.8 73 41.1
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 8.1e-07 57.8 67 41.8
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 8.1e-07 57.8 73 41.1
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 8.1e-07 57.8 73 39.7
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 8.1e-07 57.8 73 41.1
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 1.1e-06 57.4 67 44.8
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 1.1e-06 57.4 69 43.5
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 1.1e-06 57.4 71 39.4
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.4e-06 57.0 64 39.1
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 1.4e-06 57.0 64 40.6
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.4e-06 57.0 71 39.4
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 1.8e-06 56.6 58 48.3
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.8e-06 56.6 69 43.5
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.8e-06 56.6 71 39.4
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 3.1e-06 55.8 73 38.4
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 3.1e-06 55.8 73 38.4
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 4.0e-06 55.5 67 40.3
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 5.3e-06 55.1 62 37.1
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 6.9e-06 54.7 147 29.9
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 6.9e-06 54.7 53 45.3


User provided reference genes

Program Settings