Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 0.0e+00 1588.9 859 100.0
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 0.0e+00 1571.2 870 98.4
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 0.0e+00 1562.4 859 98.1
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 0.0e+00 1448.0 862 90.4
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 0.0e+00 1437.6 873 89.2
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 0.0e+00 1211.4 881 79.8
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 1.1e-273 946.8 927 63.2
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 3.3e-265 918.7 921 62.2
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.3e-256 890.2 917 61.8
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 5.2e-250 868.2 908 58.7
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 4.9e-216 755.4 972 52.9
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.3e-160 571.2 1041 41.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 5.0e-160 569.3 1037 39.9
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 3.4e-100 370.5 995 33.5
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.8e-93 348.2 984 31.3
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 1.7e-91 341.7 971 31.9
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.7e-89 334.3 977 32.0
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.7e-89 334.3 970 31.6
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 2.3e-88 331.3 960 31.9
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 8.1e-86 322.8 893 33.6
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 3.1e-85 320.9 1069 30.1
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 6.8e-85 319.7 1014 31.0
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 6.4e-83 313.2 1070 30.0
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 8.4e-83 312.8 1071 29.8
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.1e-82 312.4 1049 28.7
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.1e-81 308.1 1080 28.7
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.3e-80 305.4 817 32.6
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 1.7e-80 305.1 918 30.3
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 3.9e-80 303.9 821 32.4
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.5e-79 301.2 699 33.3
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.8e-77 295.0 1084 28.5
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 7.6e-76 289.7 684 34.4
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 7.6e-76 289.7 670 34.0
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 1.4e-74 285.4 997 28.7
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.2e-74 284.3 1000 28.9
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 7.1e-74 283.1 910 29.0
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 9.3e-74 282.7 527 36.4
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 4.6e-73 280.4 835 29.2
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 4.6e-73 280.4 850 29.6
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 6.6e-72 276.6 1005 29.1
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.5e-71 275.4 1019 28.0
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 2.1e-70 271.6 848 30.0
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 2.8e-70 271.2 893 29.6
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 2.8e-70 271.2 1011 28.7
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 3.6e-70 270.8 975 28.7
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.8e-70 270.4 1022 27.5
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.4e-69 268.9 540 36.1
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 1.8e-69 268.5 680 33.4
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 3.1e-69 267.7 836 28.8
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 2.6e-68 264.6 894 30.3
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 3.4e-68 264.2 1018 28.9
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.8e-68 263.5 1003 27.5
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 3.8e-67 260.8 967 29.1
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 4.9e-67 260.4 756 31.0
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 6.4e-67 260.0 953 28.4
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 8.4e-67 259.6 1024 28.0
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 2.4e-66 258.1 868 28.2
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.2e-65 255.8 895 28.7
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 1.3e-64 252.3 528 32.8
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 1.8e-64 251.9 963 29.3
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.3e-63 247.7 1045 28.1
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 4.3e-63 247.3 949 28.1
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.3e-62 245.7 1045 28.0
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.3e-62 245.7 555 32.3
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 2.8e-62 244.6 516 33.3
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 6.2e-62 243.4 541 32.7
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 8.1e-62 243.0 526 34.2
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 9.0e-61 239.6 604 29.3
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.0e-60 238.4 747 27.6
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 2.6e-60 238.0 922 28.4
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.4e-60 237.7 602 29.7
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 5.8e-60 236.9 866 29.1
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.2e-59 235.0 847 28.5
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 5.5e-58 230.3 967 27.5
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 9.3e-58 229.6 647 30.3
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 2.1e-57 228.4 683 28.8
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 6.0e-57 226.9 323 40.6
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 7.9e-57 226.5 526 32.5
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.0e-56 226.1 519 32.4
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.8e-56 225.3 733 27.7
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 2.3e-56 224.9 323 40.2
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 3.0e-56 224.6 651 32.9
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 3.9e-56 224.2 728 27.2
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.5e-55 222.2 890 28.3
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 1.9e-55 221.9 519 32.6
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 5.7e-55 220.3 620 30.0
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 7.4e-55 219.9 855 27.8
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 3.7e-54 217.6 710 29.4
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.4e-53 215.7 927 27.1
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.8e-53 215.3 537 30.7
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 4.1e-53 214.2 888 26.9
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 4.6e-49 200.7 909 25.4
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 5.7e-47 193.7 874 27.1
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 8.2e-46 189.9 323 38.1
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 7.7e-44 183.3 326 35.9
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 2.2e-43 181.8 176 50.6
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 2.2e-43 181.8 906 26.6
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 8.5e-43 179.9 323 35.3
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.1e-39 169.5 247 37.2
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 1.1e-37 162.9 558 26.0
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 2.1e-33 148.7 513 26.7
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.6e-31 141.7 200 37.0
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.2e-30 138.7 210 36.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 4.8e-30 137.5 178 41.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 1.3e-27 129.4 690 27.5
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 8.0e-25 120.2 241 31.5
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 2.2e-22 112.1 228 29.4
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 1.1e-18 99.8 191 32.5
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.8e-16 92.4 226 28.8
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.3e-14 86.3 395 28.1
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 1.7e-14 85.9 266 32.0
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 5.4e-13 80.9 80 51.2
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.0e-11 76.6 245 28.6


User provided reference genes

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