Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p23970 Brassica napus HOM05D001764 ORTHO05D039307 6.9e-159 563.9 285 100.0
BcaC04g22059 Brassica carinata HOM05D001764 ORTHO05D039307 2.2e-40 170.2 82 100.0
C04p14810 Brassica napus HOM05D001764 ORTHO05D033192 2.2e-32 143.7 140 57.9
BolC4t23055H Brassica oleracea HOM05D001764 ORTHO05D033192 3.2e-23 113.2 79 72.2
BcaB08g34693 Brassica carinata HOM05D000005 ORTHO05D023687 2.7e-22 110.2 62 87.1
BolC4t23057H Brassica oleracea HOM05D001764 ORTHO05D033192 2.7e-22 110.2 73 75.3
BraA09t36380Z Brassica rapa HOM05D001764 ORTHO05D001946 1.4e-13 81.3 73 60.3
BcaC04g23453 Brassica carinata HOM05D001764 ORTHO05D001946 1.8e-13 80.9 73 60.3
C09p08180 Brassica napus HOM05D001764 ORTHO05D001946 1.8e-13 80.9 73 60.3
BolC9t53730H Brassica oleracea HOM05D001764 ORTHO05D001946 1.8e-13 80.9 73 60.3
Sp2g24600 Schrenkiella parvula HOM05D001764 ORTHO05D001946 2.3e-13 80.5 73 58.9
CARHR275150 Cardamine hirsuta HOM05D001764 ORTHO05D001946 4.0e-13 79.7 97 48.5
AL8G38060 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 1.5e-12 77.8 97 47.4
AT5G61390 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 2.0e-12 77.4 97 47.4
Thhalv10004100m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 4.4e-12 76.3 73 56.2
Carub.0008s2206 Capsella rubella HOM05D001764 ORTHO05D001946 2.8e-11 73.6 97 45.4
THA.LOC104818322 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 4.8e-11 72.8 70 55.7
PSO478G1026 Papaver somniferum HOM05D001764 ORTHO05D001946 2.4e-10 70.5 102 42.2
BcaC06g32411 Brassica carinata HOM05D001764 ORTHO05D001946 3.1e-10 70.1 70 52.9
BcaC06g32500 Brassica carinata HOM05D001764 ORTHO05D001946 3.1e-10 70.1 70 52.9
A10p29410 Brassica napus HOM05D001764 ORTHO05D001946 3.1e-10 70.1 70 52.9
C09p69790 Brassica napus HOM05D001764 ORTHO05D001946 3.1e-10 70.1 70 52.9
BolC9t59723H Brassica oleracea HOM05D001764 ORTHO05D001946 3.1e-10 70.1 70 52.9
BraA10t44985Z Brassica rapa HOM05D001764 ORTHO05D001946 3.1e-10 70.1 70 52.9
Migut.I00208 Erythranthe guttata HOM05D001764 ORTHO05D001946 3.1e-10 70.1 70 55.7
AT5G07710 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 4.1e-10 69.7 138 38.4
Thhalv10013435m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 4.1e-10 69.7 70 52.9
AL6G18080 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 7.0e-10 68.9 138 37.7
Cpa.g.sc111.56 Carica papaya HOM05D001764 ORTHO05D001946 7.0e-10 68.9 70 52.9
Eucgr.B00534 Eucalyptus grandis HOM05D001764 ORTHO05D001946 7.0e-10 68.9 70 54.3
Sp6g35190 Schrenkiella parvula HOM05D001764 ORTHO05D001946 7.0e-10 68.9 70 52.9
Sabra15G0087000 Salix brachista HOM05D001764 ORTHO05D001946 1.2e-09 68.2 70 52.9
CARHR205440 Cardamine hirsuta HOM05D001764 ORTHO05D001946 1.6e-09 67.8 70 51.4
Aa31LG3G18730 Aethionema arabicum HOM05D001764 ORTHO05D001946 2.0e-09 67.4 70 51.4
CANSAT78G1062 Cannabis sativa HOM05D001764 ORTHO05D001946 2.0e-09 67.4 70 52.9
Carub.0006s0667 Capsella rubella HOM05D001764 ORTHO05D001946 2.0e-09 67.4 138 36.2
ECA246G0801 Erigeron canadensis HOM05D001764 ORTHO05D001946 2.0e-09 67.4 70 52.9
HanXRQChr05g0155001 Helianthus annuus HOM05D001764 ORTHO05D001946 2.0e-09 67.4 70 51.4
Glyma.05G025100 Glycine max HOM05D001764 ORTHO05D001946 2.7e-09 67.0 70 52.9
Glyma.17G102100 Glycine max HOM05D001764 ORTHO05D001946 2.7e-09 67.0 70 52.9
Lsat_1_v5_gn_4_109301 Lactuca sativa HOM05D001764 ORTHO05D001946 2.7e-09 67.0 70 51.4
Phvul.003G188500 Phaseolus vulgaris HOM05D001764 ORTHO05D001946 2.7e-09 67.0 70 52.9
VMungo1215G2955 Vigna mungo HOM05D001764 ORTHO05D001946 2.7e-09 67.0 70 52.9
Actinidia37612 Actinidia chinensis HOM05D001764 ORTHO05D001946 3.5e-09 66.6 70 51.4
Aa31LG11G2030 Aethionema arabicum HOM05D001764 ORTHO05D001946 3.5e-09 66.6 70 50.0
CiPaw.12G011800 Carya illinoinensis HOM05D001764 ORTHO05D001946 3.5e-09 66.6 70 51.4
Ciclev10020652m.g Citrus clementina HOM05D001764 ORTHO05D001946 3.5e-09 66.6 70 52.9
Lj4g0015220 Lotus japonicus HOM05D001764 ORTHO05D001946 3.5e-09 66.6 70 51.4
Lsat_1_v5_gn_5_21501 Lactuca sativa HOM05D001764 ORTHO05D001946 4.5e-09 66.2 70 50.0
Manes.06G090000 Manihot esculenta HOM05D001764 ORTHO05D001946 4.5e-09 66.2 70 52.9
SalBow5G2556 Salvia bowleyana HOM05D001764 ORTHO05D001946 4.5e-09 66.2 70 51.4
TAR374G0441 Trochodendron aralioides HOM05D001764 ORTHO05D001946 4.5e-09 66.2 70 51.4
GSVIVG01007971001 Vitis vinifera HOM05D001764 ORTHO05D001946 5.9e-09 65.9 70 51.4
Lj5A108T58 Lonicera japonica HOM05D001764 ORTHO05D001946 7.7e-09 65.5 70 51.4
Manes.14G081400 Manihot esculenta HOM05D001764 ORTHO05D001946 7.7e-09 65.5 70 51.4
Nn3g17322 Nelumbo nucifera HOM05D001764 ORTHO05D001946 7.7e-09 65.5 70 51.4
Nn4g23270 Nelumbo nucifera HOM05D001764 ORTHO05D001946 7.7e-09 65.5 70 50.0
TWI81G0186 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 7.7e-09 65.5 70 50.0
Actinidia19021 Actinidia chinensis HOM05D001764 ORTHO05D001946 1.0e-08 65.1 70 51.4
MSTRG.23004 Avicennia marina HOM05D001764 ORTHO05D001946 1.0e-08 65.1 70 50.0
Dinv10651 Davidia involucrata HOM05D001764 ORTHO05D001946 1.0e-08 65.1 70 51.4
MD14G1204400 Malus domestica HOM05D001764 ORTHO05D001946 1.0e-08 65.1 70 51.4
Oeu052451.1 Olea europaea HOM05D001764 ORTHO05D001946 1.0e-08 65.1 71 49.3
Os10g0407500 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 1.0e-08 65.1 70 50.0
TPR.G9268 Trifolium pratense HOM05D001764 ORTHO05D001946 1.0e-08 65.1 70 51.4
CSS0023502 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 1.3e-08 64.7 70 50.0
ClCG06G016030 Citrullus lanatus HOM05D001764 ORTHO05D001946 1.3e-08 64.7 65 55.4
Ciclev10019755m.g Citrus clementina HOM05D001764 ORTHO05D001946 1.3e-08 64.7 70 51.4
MD06G1197200 Malus domestica HOM05D001764 ORTHO05D001946 1.3e-08 64.7 70 50.0
MD14G1204300 Malus domestica HOM05D001764 ORTHO05D001946 1.3e-08 64.7 70 51.4
vmacro16525 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 1.3e-08 64.7 70 50.0
Cc04_g15180 Coffea canephora HOM05D001764 ORTHO05D001946 1.7e-08 64.3 70 51.4
Lsat_1_v5_gn_4_109181 Lactuca sativa HOM05D001764 ORTHO05D001946 1.7e-08 64.3 70 48.6
unitig_62.g23551 Utricularia gibba HOM05D001764 ORTHO05D001946 1.7e-08 64.3 79 48.1
CsaV3_1G002520 Cucumis sativus L. HOM05D001764 ORTHO05D001946 2.2e-08 63.9 70 51.4
Dinv38741 Davidia involucrata HOM05D001764 ORTHO05D001946 2.2e-08 63.9 70 50.0
Oeu047277.1 Olea europaea HOM05D001764 ORTHO05D001946 2.2e-08 63.9 67 52.2
vmacro17569 Vaccinium macrocarpon HOM05D001764 ORTHO05D001946 2.2e-08 63.9 71 52.1
QL93p0356_0066 Quercus lobata HOM05D001764 ORTHO05D001946 2.9e-08 63.5 70 50.0
Hund02627 Selenicereus undatus HOM05D001764 ORTHO05D001946 2.9e-08 63.5 70 48.6
SGA_v2.0_scaffold25G10935 Striga asiatica HOM05D001764 ORTHO05D001946 2.9e-08 63.5 70 50.0
TPR.G35116 Trifolium pratense HOM05D001764 ORTHO05D001946 2.9e-08 63.5 70 50.0
Carub.0002s2116 Capsella rubella HOM05D001764 ORTHO05D001946 3.8e-08 63.2 70 47.1
HanXRQChr08g0236671 Helianthus annuus HOM05D001764 ORTHO05D001946 3.8e-08 63.2 70 45.7
Lalb_Chr13g0303091 Lupinus albus HOM05D001764 ORTHO05D001946 3.8e-08 63.2 70 48.6
Rhsim08G0152300 Rhododendron simsii HOM05D001764 ORTHO05D001946 3.8e-08 63.2 41 70.7
THA.LOC104812092 Tarenaya hassleriana HOM05D001764 ORTHO05D001946 3.8e-08 63.2 70 48.6
Atru.chr9.148 Acer truncatum HOM05D001764 ORTHO05D001946 6.5e-08 62.4 41 68.3
AL2G34240 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 6.5e-08 62.4 70 48.6
AT1G74390 Arabidopsis thaliana HOM05D001764 ORTHO05D001946 6.5e-08 62.4 70 48.6
Thhalv10018430m.g Eutrema salsugineum HOM05D001764 ORTHO05D001946 6.5e-08 62.4 70 47.1
Prupe.5G197500 Prunus persica HOM05D001764 ORTHO05D001946 6.5e-08 62.4 70 48.6
Prupe.5G197600 Prunus persica HOM05D001764 ORTHO05D001946 8.5e-08 62.0 70 48.6
Sc04g0002830 Simmondsia chinensis HOM05D001764 ORTHO05D001946 8.5e-08 62.0 41 65.9
C06p48550 Brassica napus HOM05D001764 ORTHO05D001946 1.1e-07 61.6 79 43.0
Lalb_Chr07g0178161 Lupinus albus HOM05D001764 ORTHO05D001946 1.1e-07 61.6 70 48.6
Rhsim12G0154300 Rhododendron simsii HOM05D001764 ORTHO05D001946 1.1e-07 61.6 70 48.6
Gohir.A12G179400 Gossypium hirsutum HOM05D001764 ORTHO05D001946 1.5e-07 61.2 70 45.7
PGR083G1358 Punica granatum HOM05D001764 ORTHO05D001946 1.5e-07 61.2 70 47.1
RcHm_v2.0_Chr7g0181981 Rosa chinensis HOM05D001764 ORTHO05D001946 1.5e-07 61.2 71 47.9
Sp5g29550 Schrenkiella parvula HOM05D001764 ORTHO05D001946 1.5e-07 61.2 70 45.7
AL2G17300 Arabidopsis lyrata HOM05D001764 ORTHO05D001946 1.9e-07 60.8 67 50.7
Ca_21809_v3 Cicer arietinum L. HOM05D001764 ORTHO05D001946 1.9e-07 60.8 70 45.7
Ciclev10019899m.g Citrus clementina HOM05D001764 ORTHO05D001946 1.9e-07 60.8 65 49.2
Haze_07296 Corylus avellana HOM05D001764 ORTHO05D001946 1.9e-07 60.8 70 48.6
DCAR_016575 Daucus carota HOM05D001764 ORTHO05D001946 1.9e-07 60.8 94 42.6
QL10p017630 Quercus lobata HOM05D001764 ORTHO05D001946 1.9e-07 60.8 70 47.1
MELO3C017188.2 Cucumis melo HOM05D001764 ORTHO05D001946 2.5e-07 60.5 65 52.3
Gohir.A11G031900 Gossypium hirsutum HOM05D001764 ORTHO05D001946 2.5e-07 60.5 70 47.1
Lj5A108T59 Lonicera japonica HOM05D001764 ORTHO05D001946 2.5e-07 60.5 46 67.4
Os10g0407400 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 3.2e-07 60.1 67 44.8
arahy.Tifrunner.gnm1.ann1.W39VMW Arachis hypogaea HOM05D001764 ORTHO05D001946 4.2e-07 59.7 70 47.1
arahy.Tifrunner.gnm1.ann1.YU35ML Arachis hypogaea HOM05D001764 ORTHO05D001946 4.2e-07 59.7 70 47.1
CSS0024491 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 4.2e-07 59.7 40 65.0
AUR62008448 Chenopodium quinoa HOM05D001764 ORTHO05D001946 4.2e-07 59.7 41 63.4
Medtr4g108870 Medicago truncatula HOM05D001764 ORTHO05D001946 4.2e-07 59.7 70 47.1
Sopen03g034760 Solanum pennellii HOM05D001764 ORTHO05D001946 4.2e-07 59.7 70 48.6
Actinidia04870 Actinidia chinensis HOM05D001764 ORTHO05D001946 5.5e-07 59.3 41 65.9
BcaC08g47002 Brassica carinata HOM05D001764 ORTHO05D001946 5.5e-07 59.3 67 47.8
FvH4_5g14590 Fragaria vesca HOM05D001764 ORTHO05D001946 5.5e-07 59.3 70 47.1
FAN18G3859 Fragaria x ananassa HOM05D001764 ORTHO05D001946 5.5e-07 59.3 70 47.1
Gohir.D12G182000 Gossypium hirsutum HOM05D001764 ORTHO05D001946 5.5e-07 59.3 70 44.3
Gorai.008G195300 Gossypium raimondii HOM05D001764 ORTHO05D001946 5.5e-07 59.3 70 44.3
Nitab4.5_0001997g0090 Nicotiana tabacum HOM05D001764 ORTHO05D001946 5.5e-07 59.3 70 47.1
Aqoxy3G00479 Aquilegia oxysepala HOM05D001764 ORTHO05D001946 7.2e-07 58.9 70 44.3
Cfa018912 Carpinus fangiana HOM05D001764 ORTHO05D001946 7.2e-07 58.9 41 65.9
CiPaw.11G047000 Carya illinoinensis HOM05D001764 ORTHO05D001946 7.2e-07 58.9 70 48.6
Gohir.D11G035266 Gossypium hirsutum HOM05D001764 ORTHO05D001946 7.2e-07 58.9 41 65.9
ATR0564G211 Amborella trichopoda HOM05D001764 ORTHO05D001946 9.4e-07 58.5 70 47.1
CARHR067650 Cardamine hirsuta HOM05D001764 ORTHO05D001946 9.4e-07 58.5 70 45.7
Sed0016998 Sechium edule HOM05D001764 ORTHO05D001946 9.4e-07 58.5 70 45.7
PGSC0003DMG400019519 Solanum tuberosum HOM05D001764 ORTHO05D001946 9.4e-07 58.5 70 47.1
C04p14830 Brassica napus HOM05D001764 ORTHO05D097624 1.2e-06 58.2 26 96.2
AUR62021642 Chenopodium quinoa HOM05D001764 ORTHO05D001946 1.2e-06 58.2 41 61.0
Os10g0426300 Oryza sativa ssp. japonica HOM05D001764 ORTHO05D001946 1.2e-06 58.2 67 43.3
QL10p017602 Quercus lobata HOM05D001764 ORTHO05D001946 1.2e-06 58.2 65 49.2
Solyc03g115780.2 Solanum lycopersicum HOM05D001764 ORTHO05D001946 1.2e-06 58.2 70 47.1
CSS0024538 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 1.6e-06 57.8 67 47.8
CSS0038271 Camellia sinensis var. sinensis HOM05D001764 ORTHO05D001946 1.6e-06 57.8 67 47.8
Duzib068G0120 Durio zibethinus HOM05D001764 ORTHO05D001946 1.6e-06 57.8 70 44.3
Duzib205G0803 Durio zibethinus HOM05D001764 ORTHO05D001946 1.6e-06 57.8 70 44.3
Lj9A466T76 Lonicera japonica HOM05D001764 ORTHO05D001946 1.6e-06 57.8 67 49.3
Hund13499 Selenicereus undatus HOM05D001764 ORTHO05D001946 1.6e-06 57.8 92 39.1
Cfa018913 Carpinus fangiana HOM05D001764 ORTHO05D001946 2.1e-06 57.4 41 63.4
Sed0004706 Sechium edule HOM05D001764 ORTHO05D001946 2.1e-06 57.4 70 45.7
SGA_v2.0_scaffold313G48336 Striga asiatica HOM05D001764 ORTHO05D001946 2.7e-06 57.0 70 44.3
A07p40200 Brassica napus HOM05D001764 ORTHO05D001946 3.6e-06 56.6 67 44.8
CAN.G479.64 Capsicum annuum HOM05D001764 ORTHO05D001946 3.6e-06 56.6 70 45.7
Peaxi162Scf00106g00421 Petunia axillaris HOM05D001764 ORTHO05D001946 3.6e-06 56.6 70 45.7
Hund09819 Selenicereus undatus HOM05D001764 ORTHO05D001946 3.6e-06 56.6 65 46.2
PGSC0003DMG400021936 Solanum tuberosum HOM05D001764 ORTHO05D001946 3.6e-06 56.6 70 44.3
TWI60G1593 Tripterygium wilfordii HOM05D001764 ORTHO05D001946 3.6e-06 56.6 70 44.3
Aa31LG4G4640 Aethionema arabicum HOM05D001764 ORTHO05D001946 4.7e-06 56.2 70 45.7
EL10Ac5g11062 Beta vulgaris HOM05D001764 ORTHO05D001946 4.7e-06 56.2 70 42.9
EL10Ac6g15071 Beta vulgaris HOM05D001764 ORTHO05D001946 4.7e-06 56.2 70 42.9
MBI02_g14225_MAGBIO Magnolia biondii HOM05D001764 ORTHO05D001946 4.7e-06 56.2 41 63.4
HPP92_006010 Vanilla planifolia HOM05D001764 ORTHO05D001946 4.7e-06 56.2 70 41.4
Ah.02g113720 Amaranthus hybridus HOM05D001764 ORTHO05D001946 6.1e-06 55.8 41 61.0
MD14G1204100 Malus domestica HOM05D001764 ORTHO05D001946 6.1e-06 55.8 70 47.1
Nitab4.5_0005900g0080 Nicotiana tabacum HOM05D001764 ORTHO05D001946 6.1e-06 55.8 70 45.7
RcHm_v2.0_Chr7g0181951 Rosa chinensis HOM05D001764 ORTHO05D001946 6.1e-06 55.8 41 61.0
CDE09G0781 Ceratophyllum demersum HOM05D001764 ORTHO05D001946 8.0e-06 55.5 70 41.4
Sc16g0005460 Simmondsia chinensis HOM05D001764 ORTHO05D001946 8.0e-06 55.5 70 42.9
Sopen12g016340 Solanum pennellii HOM05D001764 ORTHO05D001946 8.0e-06 55.5 70 44.3


User provided reference genes

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