Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22063 Brassica carinata HOM05D000125 ORTHO05D019507 1.3e-53 212.6 92 100.0
C09p23900 Brassica napus HOM05D000125 ORTHO05D019507 1.3e-53 212.6 92 100.0
BolC9t55315H Brassica oleracea HOM05D000125 ORTHO05D019507 1.6e-53 212.2 91 100.0
BraA09t37524Z Brassica rapa HOM05D000125 ORTHO05D000120 2.9e-50 201.4 91 95.6
BcaB07g31126 Brassica carinata HOM05D000125 ORTHO05D000120 6.3e-45 183.7 91 84.6
AT3G48400 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.3e-21 106.3 87 55.2
Carub.0003s3395 Capsella rubella HOM05D000125 ORTHO05D000120 1.7e-21 105.9 86 55.8
BcaC08g45817 Brassica carinata HOM05D000125 ORTHO05D000120 2.2e-21 105.5 91 54.9
BraA09t36894Z Brassica rapa HOM05D000125 ORTHO05D000120 4.8e-21 104.4 86 54.7
Carub.0002s1198 Capsella rubella HOM05D000125 ORTHO05D000120 1.4e-20 102.8 94 50.0
C03p40980 Brassica napus HOM05D000125 ORTHO05D000120 1.8e-20 102.4 88 53.4
AT3G45840 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.1e-20 101.7 93 54.8
BraA07t29732Z Brassica rapa HOM05D000125 ORTHO05D000120 3.1e-20 101.7 91 52.7
AT5G59920 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 4.1e-20 101.3 91 47.3
A07p20310 Brassica napus HOM05D000125 ORTHO05D000120 4.1e-20 101.3 91 52.7
CARHR110090 Cardamine hirsuta HOM05D000125 ORTHO05D000120 5.4e-20 100.9 72 62.5
BolC3t16379H Brassica oleracea HOM05D000125 ORTHO05D000120 9.1e-20 100.1 91 53.8
BolC3t16361H Brassica oleracea HOM05D000125 ORTHO05D000120 1.6e-19 99.4 75 61.3
Carub.0005s1456 Capsella rubella HOM05D000125 ORTHO05D000120 1.6e-19 99.4 87 51.7
Aa31LG1G12060 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.0e-19 99.0 91 51.6
BolC3t16386H Brassica oleracea HOM05D000125 ORTHO05D000120 2.0e-19 99.0 88 52.3
BolC9t54381H Brassica oleracea HOM05D000125 ORTHO05D000120 4.5e-19 97.8 86 52.3
Aa31sc1332G10 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.0e-18 96.7 86 47.7
BcaC05g29929 Brassica carinata HOM05D000125 ORTHO05D000120 1.3e-18 96.3 75 57.3
BolC3t16389H Brassica oleracea HOM05D000125 ORTHO05D000120 1.3e-18 96.3 75 60.0
BolC5t34920H Brassica oleracea HOM05D000125 ORTHO05D000120 1.3e-18 96.3 75 57.3
AT5G59940 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.7e-18 95.9 91 46.2
Carub.0007s3278 Capsella rubella HOM05D000125 ORTHO05D000120 1.7e-18 95.9 87 50.6
Aa31sc23G370 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.2e-18 95.5 91 50.5
CARHR110100 Cardamine hirsuta HOM05D000125 ORTHO05D000120 2.2e-18 95.5 90 51.1
AL5G25820 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 3.8e-18 94.7 84 50.0
BcaC04g22836 Brassica carinata HOM05D000125 ORTHO05D000120 3.8e-18 94.7 86 51.2
C03p40900 Brassica napus HOM05D000125 ORTHO05D000120 3.8e-18 94.7 72 58.3
C09p14810 Brassica napus HOM05D000125 ORTHO05D000120 3.8e-18 94.7 86 51.2
BolC3t16366H Brassica oleracea HOM05D000125 ORTHO05D000120 3.8e-18 94.7 72 58.3
AT3G46800 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 5.0e-18 94.4 86 51.2
BcaC01g04363 Brassica carinata HOM05D000125 ORTHO05D000120 5.0e-18 94.4 75 60.0
C03p13140 Brassica napus HOM05D000125 ORTHO05D000120 5.0e-18 94.4 81 50.6
BolC3t16358H Brassica oleracea HOM05D000125 ORTHO05D000120 5.0e-18 94.4 72 58.3
BolC3t16374H Brassica oleracea HOM05D000125 ORTHO05D000120 5.0e-18 94.4 72 58.3
A01p40800 Brassica napus HOM05D000125 ORTHO05D000120 8.5e-18 93.6 71 59.2
BNapus_Darmor_BZH_scaffold_78p00910 Brassica napus HOM05D000125 ORTHO05D000120 8.5e-18 93.6 71 59.2
Carub.0007s3277 Capsella rubella HOM05D000125 ORTHO05D000120 8.5e-18 93.6 91 47.3
Aa31LG8G10680 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.1e-17 93.2 86 47.7
AT4G01350 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.1e-17 93.2 91 44.0
Carub.0008s2051 Capsella rubella HOM05D000125 ORTHO05D000120 1.1e-17 93.2 92 45.7
AL8G36490 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 1.5e-17 92.8 91 45.1
BcaC05g30186 Brassica carinata HOM05D000125 ORTHO05D000120 1.5e-17 92.8 75 58.7
CARHR110710 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.5e-17 92.8 72 58.3
CARHR273550 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.5e-17 92.8 86 47.7
AT5G37620 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.9e-17 92.4 87 50.6
A03p11390 Brassica napus HOM05D000125 ORTHO05D000120 2.5e-17 92.0 82 50.0
C03p13180 Brassica napus HOM05D000125 ORTHO05D000120 2.5e-17 92.0 81 50.6
BolC3t13779H Brassica oleracea HOM05D000125 ORTHO05D000120 2.5e-17 92.0 81 50.6
BraA03t10453Z Brassica rapa HOM05D000125 ORTHO05D000120 2.5e-17 92.0 82 50.0
BolC5t34921H Brassica oleracea HOM05D000125 ORTHO05D000120 3.2e-17 91.7 72 54.2
Carub.0006s2010 Capsella rubella HOM05D000125 ORTHO05D000120 4.2e-17 91.3 93 49.5
Aa31LG3G15790 Aethionema arabicum HOM05D000125 ORTHO05D000120 5.5e-17 90.9 89 47.2
C03p41000 Brassica napus HOM05D000125 ORTHO05D000120 5.5e-17 90.9 75 58.7
BolC1t05737H Brassica oleracea HOM05D000125 ORTHO05D000120 5.5e-17 90.9 72 58.3
AT5G22355 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 7.2e-17 90.5 93 47.3
Thhalv10002432m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 7.2e-17 90.5 94 50.0
Aa31LG3G5860 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.2e-16 89.7 88 52.3
Thhalv10001923m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.6e-16 89.4 90 46.7
BcaB04g19314 Brassica carinata HOM05D000125 ORTHO05D000120 2.8e-16 88.6 85 49.4
Carub.0002s1199 Capsella rubella HOM05D000125 ORTHO05D000120 2.8e-16 88.6 92 44.6
C03p40880 Brassica napus HOM05D000125 ORTHO05D000120 3.6e-16 88.2 74 55.4
Aa31LG4G15750 Aethionema arabicum HOM05D000125 ORTHO05D000120 4.7e-16 87.8 93 51.6
AT3G46810 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 6.1e-16 87.4 84 47.6
C05p62680 Brassica napus HOM05D000125 ORTHO05D000120 1.0e-15 86.7 73 53.4
AT5G59930 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 1.8e-15 85.9 88 45.5
AT2G04680 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 3.0e-15 85.1 85 50.6
AT2G19660 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 4.0e-15 84.7 69 55.1
CARHR273530 Cardamine hirsuta HOM05D000125 ORTHO05D000120 5.2e-15 84.3 93 45.2
Aa31LG4G15770 Aethionema arabicum HOM05D000125 ORTHO05D000120 6.8e-15 84.0 86 50.0
CARHR273540 Cardamine hirsuta HOM05D000125 ORTHO05D000120 6.8e-15 84.0 87 46.0
Aa31sc23G40 Aethionema arabicum HOM05D000125 ORTHO05D000120 8.8e-15 83.6 93 47.3
Thhalv10002199m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 8.8e-15 83.6 74 52.7
Aa31LG1G12050 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.2e-14 83.2 89 43.8
CARHR191180 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.5e-14 82.8 89 47.2
CARHR273560 Cardamine hirsuta HOM05D000125 ORTHO05D019507 2.0e-14 82.4 91 41.8
BcaC06g36605 Brassica carinata HOM05D000125 ORTHO05D000120 3.4e-14 81.6 73 52.1
THA.LOC104805437 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 4.4e-14 81.3 89 42.7
Thhalv10012912m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 7.5e-14 80.5 87 42.5
BcaB04g19315 Brassica carinata HOM05D000125 ORTHO05D000120 9.8e-14 80.1 91 45.1
BcaC01g06533 Brassica carinata HOM05D000125 ORTHO05D019507 1.7e-13 79.3 63 55.6
A02p06700 Brassica napus HOM05D000125 ORTHO05D000120 2.2e-13 79.0 88 46.6
C02p12000 Brassica napus HOM05D000125 ORTHO05D000120 2.2e-13 79.0 88 46.6
BraA02t05751Z Brassica rapa HOM05D000125 ORTHO05D000120 2.2e-13 79.0 88 46.6
Carub.0003s1965 Capsella rubella HOM05D000125 ORTHO05D017525 3.7e-13 78.2 73 53.4
Aa31LG4G16000 Aethionema arabicum HOM05D000125 ORTHO05D000120 4.9e-13 77.8 85 45.9
BcaB04g21360 Brassica carinata HOM05D000125 ORTHO05D000120 1.4e-12 76.3 66 53.0
CARHR110110 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.4e-12 76.3 90 44.4
Aa31LG4G15990 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.8e-12 75.9 86 45.3
CARHR175680 Cardamine hirsuta HOM05D000125 ORTHO05D000120 1.8e-12 75.9 66 54.5
C01p09610 Brassica napus HOM05D000125 ORTHO05D000120 5.4e-12 74.3 88 45.5
BcaC01g04364 Brassica carinata HOM05D000125 ORTHO05D000120 7.0e-12 73.9 83 48.2
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 1.2e-11 73.2 88 45.5
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 1.2e-11 73.2 88 45.5
BcaC05g29930 Brassica carinata HOM05D000125 ORTHO05D000120 1.6e-11 72.8 59 52.5
Thhalv10022573m.g Eutrema salsugineum HOM05D000125 ORTHO05D000120 1.6e-11 72.8 87 44.8
BcaB08g37098 Brassica carinata HOM05D000125 ORTHO05D000120 2.0e-11 72.4 91 42.9
A03p33680 Brassica napus HOM05D000125 ORTHO05D000120 2.0e-11 72.4 95 41.1
C01p09470 Brassica napus HOM05D000125 ORTHO05D000120 2.0e-11 72.4 88 45.5
C01p09640 Brassica napus HOM05D000125 ORTHO05D000120 2.0e-11 72.4 91 44.0
AT2G19650 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 2.7e-11 72.0 107 39.3
A03p59160 Brassica napus HOM05D000125 ORTHO05D000120 5.9e-11 70.9 93 43.0
BolC1t00933H Brassica oleracea HOM05D000125 ORTHO05D000120 5.9e-11 70.9 88 45.5
CARHR237640 Cardamine hirsuta HOM05D000125 ORTHO05D019507 5.9e-11 70.9 94 42.6
BcaC09g47790 Brassica carinata HOM05D000125 ORTHO05D000120 7.8e-11 70.5 58 53.4
BcaB04g21358 Brassica carinata HOM05D000125 ORTHO05D000120 1.0e-10 70.1 81 43.2
A04p30780 Brassica napus HOM05D000125 ORTHO05D000120 1.3e-10 69.7 73 49.3
BraA04t18536Z Brassica rapa HOM05D000125 ORTHO05D000120 1.3e-10 69.7 73 49.3
BolC3t16375H Brassica oleracea HOM05D000125 ORTHO05D000120 1.7e-10 69.3 94 38.3
BcaC06g36541 Brassica carinata HOM05D000125 ORTHO05D000120 2.9e-10 68.6 78 44.9
THA.LOC104805963 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 2.9e-10 68.6 86 39.5
C07p03130 Brassica napus HOM05D000125 ORTHO05D017525 1.5e-09 66.2 73 46.6
BolC7t40704H Brassica oleracea HOM05D000125 ORTHO05D017525 1.5e-09 66.2 73 46.6
C07p57230 Brassica napus HOM05D000125 ORTHO05D000120 3.3e-09 65.1 93 41.9
BolC7t46193H Brassica oleracea HOM05D000125 ORTHO05D000120 3.3e-09 65.1 93 41.9
BcaB01g04894 Brassica carinata HOM05D000051 ORTHO05D000015 4.3e-09 64.7 80 45.0
BcaB04g21361 Brassica carinata HOM05D000125 ORTHO05D000120 7.3e-09 63.9 55 58.2
THA.LOC104799077 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 1.6e-08 62.8 88 40.9
THA.LOC104802926 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 1.6e-08 62.8 73 45.2
Aa31sc652G60 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.1e-08 62.4 90 44.4
Aa31sc652G70 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.1e-08 62.4 90 44.4
CARHR261780 Cardamine hirsuta HOM05D000125 ORTHO05D000120 3.6e-08 61.6 78 46.2
BolC4t23103H Brassica oleracea HOM05D000125 ORTHO05D000120 6.1e-08 60.8 88 45.5
BcaB04g21359 Brassica carinata HOM05D000125 ORTHO05D000120 1.8e-07 59.3 58 50.0
BolC2t07299H Brassica oleracea HOM05D000125 ORTHO05D000120 2.3e-07 58.9 58 50.0
Sp5g15690 Schrenkiella parvula HOM05D000125 ORTHO05D000120 2.3e-07 58.9 91 37.4
AT5G40320 Arabidopsis thaliana HOM05D000125 ORTHO05D000120 4.0e-07 58.2 75 42.7
C05p62670 Brassica napus HOM05D000125 ORTHO05D019756 4.0e-07 58.2 41 56.1
BraA07t27874Z Brassica rapa HOM05D000125 ORTHO05D019756 4.0e-07 58.2 65 46.2
AL7G49650 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 5.2e-07 57.8 78 44.9
Aa31sc23G10 Aethionema arabicum HOM05D000125 ORTHO05D019507 6.8e-07 57.4 57 45.6
Carub.0007s3532 Capsella rubella HOM05D000125 ORTHO05D000120 8.9e-07 57.0 78 46.2
THA.LOC104803117 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 1.2e-06 56.6 79 44.3
THA.LOC104820137 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 1.2e-06 56.6 79 40.5
Aa31sc23G30 Aethionema arabicum HOM05D000125 ORTHO05D000120 1.5e-06 56.2 37 59.5
BcaC07g39845 Brassica carinata HOM05D000125 ORTHO05D000120 1.5e-06 56.2 92 37.0
BraA03t14976Z Brassica rapa HOM05D000125 ORTHO05D000120 2.0e-06 55.8 70 42.9
COL.COLO4_29484 Corchorus olitorius HOM05D000125 ORTHO05D000120 2.0e-06 55.8 79 43.0
Duzib212G0494 Durio zibethinus HOM05D000125 ORTHO05D000120 2.0e-06 55.8 85 37.6
Aa31LG9G1310 Aethionema arabicum HOM05D000125 ORTHO05D000120 2.6e-06 55.5 72 47.2
BcaC02g11458 Brassica carinata HOM05D000125 ORTHO05D000120 2.6e-06 55.5 88 43.2
C04p15320 Brassica napus HOM05D000125 ORTHO05D000120 2.6e-06 55.5 88 43.2
C07p37170 Brassica napus HOM05D000125 ORTHO05D000120 3.4e-06 55.1 61 45.9
BolC7t44227H Brassica oleracea HOM05D000125 ORTHO05D000120 3.4e-06 55.1 61 45.9
THA.LOC104813860 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 3.4e-06 55.1 96 41.7
BolC4t23105H Brassica oleracea HOM05D000125 ORTHO05D000120 4.4e-06 54.7 88 42.0
Thecc.05G165600 Theobroma cacao HOM05D000125 ORTHO05D000120 4.4e-06 54.7 91 35.2
BcaB02g10594 Brassica carinata HOM05D000125 ORTHO05D000120 5.7e-06 54.3 89 41.6
C07p02220 Brassica napus HOM05D049256 ORTHO05D040465 5.7e-06 54.3 69 43.5
BolC3t16363H Brassica oleracea HOM05D000125 ORTHO05D000120 5.7e-06 54.3 77 37.7
BolC7t40631H Brassica oleracea HOM05D049256 ORTHO05D040465 5.7e-06 54.3 69 43.5
THA.LOC104820136 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 5.7e-06 54.3 64 43.8
C04p15280 Brassica napus HOM05D000125 ORTHO05D000120 9.8e-06 53.5 89 40.4
BolC4t23100H Brassica oleracea HOM05D000125 ORTHO05D000120 9.8e-06 53.5 89 40.4
BraA03t14975Z Brassica rapa HOM05D000125 ORTHO05D000120 9.8e-06 53.5 70 42.9
THA.LOC104819099 Tarenaya hassleriana HOM05D000125 ORTHO05D000120 9.8e-06 53.5 69 40.6


User provided reference genes

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