Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p23500 Brassica napus HOM05D002909 ORTHO05D000493 6.7e-79 297.4 158 100.0
BolC9t55271H Brassica oleracea HOM05D002909 ORTHO05D000493 6.9e-76 287.3 151 100.0
BcaC04g22094 Brassica carinata HOM05D002909 ORTHO05D000493 5.0e-74 281.2 189 83.6
BolC9t55266H Brassica oleracea HOM05D002909 ORTHO05D000493 2.2e-61 239.2 183 76.0
A09p18750 Brassica napus HOM05D002909 ORTHO05D000493 4.5e-59 231.5 215 65.1
BraA09t37498Z Brassica rapa HOM05D002909 ORTHO05D000493 4.5e-59 231.5 215 65.1
A09p18730 Brassica napus HOM05D002909 ORTHO05D000493 1.9e-57 226.1 214 63.6
BcaNung03314 Brassica carinata HOM05D002909 ORTHO05D000493 2.2e-50 202.6 218 57.8
BcaB07g31152 Brassica carinata HOM05D002909 ORTHO05D000493 1.2e-48 196.8 223 55.6
Sp2g05870 Schrenkiella parvula HOM05D002909 ORTHO05D000493 1.1e-41 173.7 217 53.0
SpUn0028_0070 Schrenkiella parvula HOM05D002909 ORTHO05D000493 1.1e-41 173.7 217 53.0
BcaC04g22095 Brassica carinata HOM05D004489 ORTHO05D000493 4.7e-40 168.3 114 80.7
C09p23440 Brassica napus HOM05D002909 ORTHO05D000493 1.4e-39 166.8 124 77.4
BcaC09g49523 Brassica carinata HOM05D002909 ORTHO05D000493 8.6e-26 120.9 228 41.7
AL6G12210 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.6e-24 116.7 211 39.8
AT5G02930 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 1.2e-22 110.5 219 38.4
AL6G12200 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 4.7e-16 88.6 216 36.6
AL4G36770 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.4e-15 87.0 181 36.5
Carub.0001s3548 Capsella rubella HOM05D002909 ORTHO05D000493 4.0e-15 85.5 130 44.6
AL380U10020 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 5.2e-15 85.1 180 35.6
AL6G12190 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 5.2e-15 85.1 218 33.9
Carub.0006s0172 Capsella rubella HOM05D002909 ORTHO05D000493 6.8e-15 84.7 219 34.7
C04p23450 Brassica napus HOM05D002909 ORTHO05D000493 8.9e-15 84.3 188 34.0
Carub.0001s3546 Capsella rubella HOM05D002909 ORTHO05D000493 1.2e-14 84.0 122 47.5
Aa31LG1G22020 Aethionema arabicum HOM05D002909 ORTHO05D000493 7.5e-14 81.3 134 44.0
Carub.0006s0171 Capsella rubella HOM05D002909 ORTHO05D000493 9.8e-14 80.9 125 48.0
C05p47960 Brassica napus HOM05D002909 ORTHO05D000493 1.7e-13 80.1 148 39.9
Carub.0001s3547 Capsella rubella HOM05D002909 ORTHO05D000493 1.7e-13 80.1 130 45.4
AL1G67340 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 2.2e-13 79.7 131 42.7
A03p22610 Brassica napus HOM05D000223 ORTHO05D001193 3.7e-13 79.0 118 45.8
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 3.7e-13 79.0 118 45.8
AL6G12050 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 6.4e-13 78.2 223 32.3
AT5G02910 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 8.3e-13 77.8 126 46.8
A05p31390 Brassica napus HOM05D002909 ORTHO05D000493 1.9e-12 76.6 125 43.2
BraA05t21978Z Brassica rapa HOM05D002909 ORTHO05D000493 1.9e-12 76.6 125 43.2
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 2.4e-12 76.3 118 44.9
BcaC05g28665 Brassica carinata HOM05D002909 ORTHO05D000493 3.2e-12 75.9 126 41.3
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 3.2e-12 75.9 118 44.1
BolC5t33510H Brassica oleracea HOM05D002909 ORTHO05D000493 3.2e-12 75.9 126 41.3
CARHR093470 Cardamine hirsuta HOM05D002909 ORTHO05D000493 3.2e-12 75.9 122 43.4
BcaC05g28664 Brassica carinata HOM05D002909 ORTHO05D000493 4.1e-12 75.5 148 38.5
BolC5t33509H Brassica oleracea HOM05D002909 ORTHO05D000493 4.1e-12 75.5 148 38.5
AT3G28410 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 5.4e-12 75.1 122 41.8
A05p31430 Brassica napus HOM05D002909 ORTHO05D000493 5.4e-12 75.1 135 40.7
C05p47940 Brassica napus HOM05D002909 ORTHO05D000493 5.4e-12 75.1 121 40.5
BraA05t21982Z Brassica rapa HOM05D002909 ORTHO05D000493 5.4e-12 75.1 135 40.7
CARHR210380 Cardamine hirsuta HOM05D002909 ORTHO05D000493 5.4e-12 75.1 200 34.0
C05p47750 Brassica napus HOM05D002909 ORTHO05D000493 7.1e-12 74.7 128 42.2
BraA05t21980Z Brassica rapa HOM05D002909 ORTHO05D000493 7.1e-12 74.7 123 42.3
A05p31650 Brassica napus HOM05D002909 ORTHO05D000493 9.2e-12 74.3 128 40.6
BraA05t21998Z Brassica rapa HOM05D002909 ORTHO05D000493 9.2e-12 74.3 126 40.5
AL6G12380 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.2e-11 73.9 122 40.2
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.2e-11 73.9 118 44.1
A05p31620 Brassica napus HOM05D002909 ORTHO05D000493 1.2e-11 73.9 121 39.7
C05p47700 Brassica napus HOM05D002909 ORTHO05D000493 1.2e-11 73.9 123 42.3
BraA05t21995Z Brassica rapa HOM05D002909 ORTHO05D000493 1.2e-11 73.9 121 39.7
Carub.0001s3549 Capsella rubella HOM05D002909 ORTHO05D000493 1.2e-11 73.9 120 43.3
A05p30760 Brassica napus HOM05D002909 ORTHO05D000493 2.1e-11 73.2 130 41.5
BraA05t21915Z Brassica rapa HOM05D002909 ORTHO05D000493 2.7e-11 72.8 130 41.5
Thhalv10021970m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 2.7e-11 72.8 132 37.9
AL4G21500 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 3.5e-11 72.4 120 43.3
BolC5t33479H Brassica oleracea HOM05D002909 ORTHO05D000493 3.5e-11 72.4 123 42.3
Sp6g39690 Schrenkiella parvula HOM05D002909 ORTHO05D000493 3.5e-11 72.4 121 47.1
AT5G02700 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 4.6e-11 72.0 216 31.0
BcaNung03626 Brassica carinata HOM05D002909 ORTHO05D000493 4.6e-11 72.0 127 41.7
Thhalv10022165m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 4.6e-11 72.0 122 41.0
Carub.0006s0158 Capsella rubella HOM05D002909 ORTHO05D000493 6.0e-11 71.6 221 30.3
BcaB06g25936 Brassica carinata HOM05D002909 ORTHO05D000493 7.8e-11 71.2 129 36.4
AL4G15410 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.0e-10 70.9 153 39.2
C09p73760 Brassica napus HOM05D002909 ORTHO05D000493 1.0e-10 70.9 218 29.8
BolC5t33490H Brassica oleracea HOM05D002909 ORTHO05D000493 1.0e-10 70.9 128 42.2
BolC9t60109H Brassica oleracea HOM05D002909 ORTHO05D000493 1.0e-10 70.9 218 29.8
Thhalv10025165m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 1.0e-10 70.9 219 31.1
C01p03500 Brassica napus HOM05D002909 ORTHO05D000493 1.3e-10 70.5 122 43.4
BolC5t33508H Brassica oleracea HOM05D002909 ORTHO05D000493 1.3e-10 70.5 129 38.8
BraA01t00300Z Brassica rapa HOM05D002909 ORTHO05D000493 1.7e-10 70.1 122 43.4
BraA05t21996Z Brassica rapa HOM05D002909 ORTHO05D000493 1.7e-10 70.1 126 38.9
BraA07t29573Z Brassica rapa HOM05D002909 ORTHO05D000493 1.7e-10 70.1 137 37.2
C05p48010 Brassica napus HOM05D002909 ORTHO05D000493 2.3e-10 69.7 103 44.7
BcaNung00595 Brassica carinata HOM05D002909 ORTHO05D000493 3.0e-10 69.3 122 43.4
BolC1t00339H Brassica oleracea HOM05D002909 ORTHO05D000493 3.0e-10 69.3 122 43.4
Carub.0004s0321 Capsella rubella HOM05D002909 ORTHO05D000493 3.0e-10 69.3 144 39.6
A07p18610 Brassica napus HOM05D002909 ORTHO05D000493 3.9e-10 68.9 123 39.0
BcaC06g32019 Brassica carinata HOM05D002909 ORTHO05D000493 5.1e-10 68.6 115 41.7
CARHR135220 Cardamine hirsuta HOM05D002909 ORTHO05D000493 5.1e-10 68.6 117 42.7
CARHR210400 Cardamine hirsuta HOM05D002909 ORTHO05D000493 5.1e-10 68.6 214 31.8
C09p73670 Brassica napus HOM05D002909 ORTHO05D000493 6.6e-10 68.2 120 42.5
C09p73750 Brassica napus HOM05D002909 ORTHO05D000493 6.6e-10 68.2 121 45.5
BolC9t60097H Brassica oleracea HOM05D002909 ORTHO05D000493 6.6e-10 68.2 120 42.5
Carub.0002s0692 Capsella rubella HOM05D002909 ORTHO05D000493 6.6e-10 68.2 118 41.5
Thhalv10027555m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 6.6e-10 68.2 132 36.4
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 8.6e-10 67.8 123 38.2
A05p30770 Brassica napus HOM05D002909 ORTHO05D000493 8.6e-10 67.8 125 39.2
AL3G31320 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.1e-09 67.4 121 40.5
AL3G41860 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 1.1e-09 67.4 115 42.6
BcaNung04729 Brassica carinata HOM05D002909 ORTHO05D000493 1.1e-09 67.4 121 45.5
A10p32850 Brassica napus HOM05D002909 ORTHO05D000493 1.1e-09 67.4 121 45.5
BolC9t60108H Brassica oleracea HOM05D002909 ORTHO05D000493 1.1e-09 67.4 121 45.5
BraA10t45322Z Brassica rapa HOM05D002909 ORTHO05D000493 1.1e-09 67.4 121 45.5
AT3G03360 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 1.5e-09 67.0 126 40.5
BcaC02g10939 Brassica carinata HOM05D002909 ORTHO05D000493 1.5e-09 67.0 120 40.0
BcaB01g05867 Brassica carinata HOM05D002909 ORTHO05D000493 1.9e-09 66.6 223 31.8
C04p23470 Brassica napus HOM05D002909 ORTHO05D000493 1.9e-09 66.6 128 38.3
AL6G12220 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 2.5e-09 66.2 125 40.8
BolC4t23850H Brassica oleracea HOM05D002909 ORTHO05D000493 2.5e-09 66.2 128 36.7
BcaB02g09042 Brassica carinata HOM05D002909 ORTHO05D000493 3.3e-09 65.9 199 31.7
A03p04020 Brassica napus HOM05D002909 ORTHO05D000493 3.3e-09 65.9 235 29.8
A04p07840 Brassica napus HOM05D002909 ORTHO05D000493 3.3e-09 65.9 190 33.7
BraA04t16472Z Brassica rapa HOM05D002909 ORTHO05D000493 3.3e-09 65.9 190 33.7
Carub.0002s0507 Capsella rubella HOM05D002909 ORTHO05D000493 3.3e-09 65.9 212 31.1
Carub.0006s0173 Capsella rubella HOM05D002909 ORTHO05D000493 3.3e-09 65.9 126 41.3
CARHR210420 Cardamine hirsuta HOM05D002909 ORTHO05D000493 3.3e-09 65.9 224 29.5
CARHR093450 Cardamine hirsuta HOM05D002909 ORTHO05D000493 5.6e-09 65.1 93 46.2
CARHR117790 Cardamine hirsuta HOM05D002909 ORTHO05D000493 5.6e-09 65.1 106 41.5
AL1G55004 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 7.3e-09 64.7 132 37.9
BraA03t09745Z Brassica rapa HOM05D002909 ORTHO05D000493 7.3e-09 64.7 235 29.4
BcaC02g12135 Brassica carinata HOM05D002909 ORTHO05D000493 9.5e-09 64.3 211 29.4
BcaC06g32021 Brassica carinata HOM05D002909 ORTHO05D000493 9.5e-09 64.3 121 43.8
C09p73770 Brassica napus HOM05D002909 ORTHO05D000493 9.5e-09 64.3 115 40.0
BolC9t60110H Brassica oleracea HOM05D002909 ORTHO05D000493 9.5e-09 64.3 115 40.0
CARHR210560 Cardamine hirsuta HOM05D002909 ORTHO05D000493 9.5e-09 64.3 223 30.0
BcaC06g32031 Brassica carinata HOM05D002909 ORTHO05D000493 1.2e-08 63.9 225 29.3
C03p01260 Brassica napus HOM05D002909 ORTHO05D000493 1.6e-08 63.5 156 34.0
BolC3t12685H Brassica oleracea HOM05D002909 ORTHO05D000493 1.6e-08 63.5 156 34.0
A03p00970 Brassica napus HOM05D002909 ORTHO05D000493 2.1e-08 63.2 128 42.2
C05p48020 Brassica napus HOM05D002909 ORTHO05D000493 2.1e-08 63.2 95 46.3
Carub.0006s0055 Capsella rubella HOM05D002909 ORTHO05D000493 2.1e-08 63.2 183 35.0
BcaC05g28642 Brassica carinata HOM05D002909 ORTHO05D000493 2.8e-08 62.8 174 33.3
A05p31610 Brassica napus HOM05D002909 ORTHO05D000493 2.8e-08 62.8 108 38.9
C05p46680 Brassica napus HOM05D002909 ORTHO05D000493 2.8e-08 62.8 117 38.5
BolC4t22344H Brassica oleracea HOM05D002909 ORTHO05D000493 2.8e-08 62.8 211 28.4
Thhalv10026908m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 2.8e-08 62.8 206 30.1
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.6e-08 62.4 95 43.2
BolC6t38534H Brassica oleracea HOM05D002909 ORTHO05D000493 3.6e-08 62.4 109 39.4
Thhalv10027265m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 3.6e-08 62.4 124 41.1
BcaC02g12137 Brassica carinata HOM05D002909 ORTHO05D000493 4.7e-08 62.0 125 38.4
AL1G15160 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 6.2e-08 61.6 207 29.5
BcaC05g28646 Brassica carinata HOM05D002909 ORTHO05D000493 6.2e-08 61.6 103 42.7
BcaC06g32020 Brassica carinata HOM05D002909 ORTHO05D000493 6.2e-08 61.6 116 41.4
BcaNung03627 Brassica carinata HOM05D002909 ORTHO05D000493 8.1e-08 61.2 162 35.2
BolC4t25729H Brassica oleracea HOM05D002909 ORTHO05D000493 8.1e-08 61.2 198 30.3
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.1e-07 60.8 123 35.8
BcaB03g15699 Brassica carinata HOM05D002909 ORTHO05D000493 1.1e-07 60.8 125 37.6
BcaC06g32033 Brassica carinata HOM05D002909 ORTHO05D000493 1.1e-07 60.8 93 38.7
C09p73900 Brassica napus HOM05D002909 ORTHO05D000493 1.1e-07 60.8 213 29.1
AT1G57690 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 1.4e-07 60.5 128 39.1
CARHR210540 Cardamine hirsuta HOM05D002909 ORTHO05D000493 1.4e-07 60.5 197 29.9
A07p29890 Brassica napus HOM05D002909 ORTHO05D000493 1.8e-07 60.1 125 37.6
C09p31710 Brassica napus HOM05D002909 ORTHO05D000493 1.8e-07 60.1 190 30.5
C09p31760 Brassica napus HOM05D002909 ORTHO05D000493 1.8e-07 60.1 190 30.5
BraA03t09479Z Brassica rapa HOM05D002909 ORTHO05D000493 1.8e-07 60.1 128 41.4
AL6G44930 Arabidopsis lyrata HOM05D002909 ORTHO05D000493 2.3e-07 59.7 212 27.8
C04p41470 Brassica napus HOM05D002909 ORTHO05D000493 2.3e-07 59.7 198 30.3
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 3.1e-07 59.3 101 41.6
BcaC05g28567 Brassica carinata HOM05D002909 ORTHO05D000493 4.0e-07 58.9 79 44.3
Thhalv10013441m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 6.8e-07 58.2 139 36.7
BcaB01g05865 Brassica carinata HOM05D002909 ORTHO05D000493 8.9e-07 57.8 121 40.5
Carub.0002s0506 Capsella rubella HOM05D002909 ORTHO05D000493 1.5e-06 57.0 125 36.0
BraA05t21919Z Brassica rapa HOM05D002909 ORTHO05D000493 2.0e-06 56.6 73 45.2
BolC5t33396H Brassica oleracea HOM05D002909 ORTHO05D000493 2.6e-06 56.2 73 45.2
AL4G38580 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 7.6e-06 54.7 163 31.3
AT1G49610 Arabidopsis thaliana HOM05D002909 ORTHO05D000493 9.9e-06 54.3 134 32.1
BolC9t56026H Brassica oleracea HOM05D002909 ORTHO05D000493 9.9e-06 54.3 155 30.3
BolC9t56033H Brassica oleracea HOM05D002909 ORTHO05D000493 9.9e-06 54.3 155 30.3


User provided reference genes

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