Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 1.4e-45 186.0 99 100.0
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 9.8e-28 126.7 72 94.4
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 9.8e-28 126.7 72 94.4
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 7.0e-26 120.6 72 93.1
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 1.2e-25 119.8 72 91.7
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 3.5e-25 118.2 85 77.6
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 2.3e-24 115.5 72 87.5
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 5.0e-24 114.4 72 86.1
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 8.6e-24 113.6 72 86.1
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 8.6e-24 113.6 72 86.1
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 4.3e-23 111.3 70 85.7
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 1.6e-22 109.4 75 82.7
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 2.1e-22 109.0 71 85.9
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 6.8e-21 104.0 73 80.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 4.4e-20 101.3 70 81.4
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 1.9e-18 95.9 72 76.4
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 2.4e-18 95.5 49 98.0
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 1.2e-17 93.2 49 93.9
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 2.3e-16 89.0 49 89.8
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 1.5e-15 86.3 49 87.8
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 1.6e-14 82.8 70 67.1
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 2.8e-14 82.0 77 61.0
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 4.7e-14 81.3 71 66.2
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 4.0e-13 78.2 57 70.2
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 5.2e-13 77.8 69 65.2
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.2e-12 76.6 69 65.2
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 1.5e-12 76.3 49 77.6
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 2.6e-12 75.5 70 58.6
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 2.6e-12 75.5 68 63.2
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 3.4e-12 75.1 70 60.0
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 4.4e-12 74.7 68 63.2
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 4.4e-12 74.7 68 63.2
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 4.4e-12 74.7 68 63.2
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 5.8e-12 74.3 49 75.5
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 5.8e-12 74.3 68 64.7
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 5.8e-12 74.3 72 59.7
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 7.5e-12 73.9 80 56.2
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 7.5e-12 73.9 70 58.6
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 7.5e-12 73.9 78 59.0
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 7.5e-12 73.9 69 56.5
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 7.5e-12 73.9 55 67.3
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 9.9e-12 73.6 58 63.8
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 1.3e-11 73.2 71 59.2
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 1.3e-11 73.2 75 56.0
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 1.7e-11 72.8 55 67.3
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 1.7e-11 72.8 58 63.8
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 2.2e-11 72.4 72 56.9
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 2.2e-11 72.4 70 57.1
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 2.9e-11 72.0 66 59.1
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 2.9e-11 72.0 74 60.8
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 3.7e-11 71.6 64 59.4
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 3.7e-11 71.6 64 59.4
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 3.7e-11 71.6 80 55.0
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 3.7e-11 71.6 71 64.8
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 3.7e-11 71.6 58 65.5
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 4.9e-11 71.2 55 63.6
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 4.9e-11 71.2 44 72.7
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 6.4e-11 70.9 74 51.4
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 6.4e-11 70.9 74 52.7
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 6.4e-11 70.9 41 80.5
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 6.4e-11 70.9 64 57.8
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 8.3e-11 70.5 72 52.8
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 8.3e-11 70.5 79 57.0
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 8.3e-11 70.5 79 57.0
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 8.3e-11 70.5 51 72.5
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 8.3e-11 70.5 51 72.5
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 8.3e-11 70.5 57 61.4
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 8.3e-11 70.5 43 76.7
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 1.1e-10 70.1 61 62.3
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 1.1e-10 70.1 56 66.1
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.4e-10 69.7 68 61.8
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.4e-10 69.7 50 66.0
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.4e-10 69.7 74 52.7
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 1.4e-10 69.7 67 56.7
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.4e-10 69.7 50 68.0
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.4e-10 69.7 50 68.0
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 1.4e-10 69.7 50 74.0
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 1.9e-10 69.3 55 60.0
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.9e-10 69.3 55 63.6
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 1.9e-10 69.3 63 61.9
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 2.4e-10 68.9 74 52.7
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 2.4e-10 68.9 72 52.8
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 2.4e-10 68.9 61 60.7
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 2.4e-10 68.9 71 56.3
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 3.2e-10 68.6 55 65.5
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 3.2e-10 68.6 48 66.7
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 3.2e-10 68.6 78 55.1
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 3.2e-10 68.6 60 58.3
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 3.2e-10 68.6 75 50.7
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 5.4e-10 67.8 72 52.8
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 5.4e-10 67.8 77 50.6
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 7.1e-10 67.4 72 54.2
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 7.1e-10 67.4 70 57.1
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.2e-09 66.6 69 50.7
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 1.6e-09 66.2 75 52.0
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 1.6e-09 66.2 68 55.9
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 1.6e-09 66.2 47 61.7
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.6e-09 66.2 55 60.0
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 2.1e-09 65.9 41 75.6
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 2.1e-09 65.9 41 75.6
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 2.1e-09 65.9 71 52.1
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 2.1e-09 65.9 42 71.4
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 3.5e-09 65.1 44 70.5
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 6.0e-09 64.3 53 58.5
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 7.8e-09 63.9 51 64.7
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 1.0e-08 63.5 58 56.9
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 2.3e-08 62.4 42 71.4
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 1.5e-07 59.7 51 56.9
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 2.5e-07 58.9 49 59.2
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 3.3e-07 58.5 35 74.3
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 5.6e-07 57.8 62 53.2
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 2.1e-06 55.8 31 87.1
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.2e-06 54.3 60 48.3
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 8.1e-06 53.9 40 67.5


User provided reference genes

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