Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p20270 Brassica napus HOM05D006701 ORTHO05D041900 9.5e-65 250.0 122 100.0
BolC9t54932H Brassica oleracea HOM05D006701 ORTHO05D041900 2.8e-61 238.4 122 96.7
CARHR050570 Cardamine hirsuta HOM05D006701 ORTHO05D008617 2.1e-24 115.9 105 64.8
A01p30650 Brassica napus HOM05D006701 ORTHO05D008617 2.8e-24 115.5 105 62.9
C01p39050 Brassica napus HOM05D006701 ORTHO05D008617 2.8e-24 115.5 105 62.9
BolC1t03855H Brassica oleracea HOM05D006701 ORTHO05D008617 2.8e-24 115.5 105 62.9
BraA01t03196Z Brassica rapa HOM05D006701 ORTHO05D008617 2.8e-24 115.5 105 62.9
BcaC06g31862 Brassica carinata HOM05D006701 ORTHO05D008617 3.6e-24 115.2 105 61.9
Carub.0002s0330 Capsella rubella HOM05D006701 ORTHO05D008617 3.6e-24 115.2 120 59.2
AT1G61770 Arabidopsis thaliana HOM05D006701 ORTHO05D008617 4.8e-24 114.8 105 63.8
AL2G14340 Arabidopsis lyrata HOM05D006701 ORTHO05D008617 1.1e-23 113.6 105 62.9
BcaB04g20372 Brassica carinata HOM05D006701 ORTHO05D008617 1.1e-23 113.6 105 61.9
Thhalv10023612m.g Eutrema salsugineum HOM05D006701 ORTHO05D008617 1.1e-23 113.6 105 63.8
BcaC02g10536 Brassica carinata HOM05D006701 ORTHO05D008617 1.8e-23 112.8 105 61.0
C04p27740 Brassica napus HOM05D006701 ORTHO05D008617 1.8e-23 112.8 105 61.0
BolC4t24318H Brassica oleracea HOM05D006701 ORTHO05D008617 1.8e-23 112.8 105 61.0
Sp2g02780 Schrenkiella parvula HOM05D006701 ORTHO05D008617 6.9e-23 110.9 105 60.0
Aa31LG2G9070 Aethionema arabicum HOM05D006701 ORTHO05D008617 4.4e-22 108.2 105 60.0
THA.LOC104823519 Tarenaya hassleriana HOM05D006701 ORTHO05D008617 3.9e-18 95.1 105 52.4
Nitab4.5_0002347g0200 Nicotiana tabacum HOM05D006701 ORTHO05D008617 3.6e-16 88.6 120 45.8
Lj2C273G7 Lonicera japonica HOM05D006701 ORTHO05D008617 1.8e-15 86.3 103 50.5
Nitab4.5_0008530g0020 Nicotiana tabacum HOM05D006701 ORTHO05D008617 3.1e-15 85.5 120 45.8
Oeu051225.1 Olea europaea HOM05D006701 ORTHO05D008617 3.1e-15 85.5 105 50.5
vmacro15832 Vaccinium macrocarpon HOM05D006701 ORTHO05D008617 3.1e-15 85.5 104 47.1
Ciclev10016095m.g Citrus clementina HOM05D006701 ORTHO05D008617 2.0e-14 82.8 105 48.6
COL.COLO4_31725 Corchorus olitorius HOM05D006701 ORTHO05D008617 2.0e-14 82.8 105 46.7
Duzib192G0925 Durio zibethinus HOM05D006701 ORTHO05D008617 2.0e-14 82.8 105 46.7
Thecc.06G214000 Theobroma cacao HOM05D006701 ORTHO05D008617 2.0e-14 82.8 105 46.7
ClCG03G004970 Citrullus lanatus HOM05D006701 ORTHO05D008617 2.6e-14 82.4 105 48.6
Hma1.2p1_0729F.1_g209540 Hydrangea macrophylla HOM05D006701 ORTHO05D008617 2.6e-14 82.4 105 46.7
CSS0001351 Camellia sinensis var. sinensis HOM05D006701 ORTHO05D008617 3.4e-14 82.0 105 47.6
CSS0035638 Camellia sinensis var. sinensis HOM05D006701 ORTHO05D008617 3.4e-14 82.0 105 47.6
PSO210G6384 Papaver somniferum HOM05D006701 ORTHO05D008617 3.4e-14 82.0 105 44.8
Atru.BG.301.p Acer truncatum HOM05D006701 ORTHO05D008617 4.5e-14 81.6 105 47.6
Cc02_g11720 Coffea canephora HOM05D006701 ORTHO05D008617 4.5e-14 81.6 105 48.6
MELO3C002482.2 Cucumis melo HOM05D006701 ORTHO05D008617 4.5e-14 81.6 105 47.6
Gohir.A10G015300 Gossypium hirsutum HOM05D006701 ORTHO05D008617 5.8e-14 81.3 103 46.6
Potri.004G022600 Populus trichocarpa HOM05D006701 ORTHO05D008617 5.8e-14 81.3 105 47.6
MSTRG.15965 Avicennia marina HOM05D006701 ORTHO05D008617 7.6e-14 80.9 103 48.5
CAN.G569.42 Capsicum annuum HOM05D006701 ORTHO05D008617 7.6e-14 80.9 120 43.3
Gohir.D10G015300 Gossypium hirsutum HOM05D006701 ORTHO05D008617 7.6e-14 80.9 103 46.6
Gorai.011G016900 Gossypium raimondii HOM05D006701 ORTHO05D008617 7.6e-14 80.9 103 46.6
Cpa.g.sc198.8 Carica papaya HOM05D006701 ORTHO05D008617 1.3e-13 80.1 105 47.6
PSO832G2398 Papaver somniferum HOM05D006701 ORTHO05D008617 1.3e-13 80.1 105 43.8
TAR627G0975 Trochodendron aralioides HOM05D006701 ORTHO05D008617 1.3e-13 80.1 103 43.7
Duzib235G0297 Durio zibethinus HOM05D006701 ORTHO05D008617 1.7e-13 79.7 105 46.7
Prupe.4G026200 Prunus persica HOM05D006701 ORTHO05D008617 1.7e-13 79.7 105 45.7
Solyc02g080130.4 Solanum lycopersicum HOM05D006701 ORTHO05D008617 1.7e-13 79.7 105 44.8
Sopen02g024840 Solanum pennellii HOM05D006701 ORTHO05D008617 1.7e-13 79.7 105 44.8
CsaV3_1G011040 Cucumis sativus L. HOM05D006701 ORTHO05D008617 2.2e-13 79.3 105 45.7
CANSAT64G1674 Cannabis sativa HOM05D006701 ORTHO05D008617 2.9e-13 79.0 105 45.7
PGSC0003DMG400002069 Solanum tuberosum HOM05D006701 ORTHO05D008617 3.8e-13 78.6 105 43.8
PGR004G1213 Punica granatum HOM05D006701 ORTHO05D008617 4.9e-13 78.2 103 45.6
Sabra04G0012400 Salix brachista HOM05D006701 ORTHO05D008617 6.4e-13 77.8 120 42.5
Sed0002887 Sechium edule HOM05D006701 ORTHO05D008617 8.4e-13 77.4 105 44.8
CiPaw.09G086900 Carya illinoinensis HOM05D006701 ORTHO05D008617 1.1e-12 77.0 105 43.8
DCAR_004192 Daucus carota HOM05D006701 ORTHO05D008617 1.1e-12 77.0 105 41.9
Glyma.10G252200 Glycine max HOM05D006701 ORTHO05D008617 1.9e-12 76.3 105 44.8
GSVIVG01012629001 Vitis vinifera HOM05D006701 ORTHO05D008617 1.9e-12 76.3 96 46.9
Hund21379 Selenicereus undatus HOM05D006701 ORTHO05D008617 2.4e-12 75.9 103 44.7
FvH4_3g02660 Fragaria vesca HOM05D006701 ORTHO05D008617 4.2e-12 75.1 105 41.9
Phvul.007G052100 Phaseolus vulgaris HOM05D006701 ORTHO05D008617 4.2e-12 75.1 107 42.1
Peaxi162Scf00082g10216 Petunia axillaris HOM05D006701 ORTHO05D008617 5.4e-12 74.7 105 43.8
HanXRQChr01g0002541 Helianthus annuus HOM05D006701 ORTHO05D008617 7.1e-12 74.3 103 46.6
Sed0012738 Sechium edule HOM05D006701 ORTHO05D008617 7.1e-12 74.3 103 45.6
VMungo0720G1489 Vigna mungo HOM05D006701 ORTHO05D008617 7.1e-12 74.3 109 41.3
Migut.M01280 Erythranthe guttata HOM05D006701 ORTHO05D008617 9.3e-12 73.9 105 41.0
FAN21G1084 Fragaria x ananassa HOM05D006701 ORTHO05D008617 9.3e-12 73.9 105 41.9
MD05G1341100 Malus domestica HOM05D006701 ORTHO05D008617 9.3e-12 73.9 105 43.8
QL05p075154 Quercus lobata HOM05D006701 ORTHO05D008617 9.3e-12 73.9 105 43.8
QL93p0073_0728 Quercus lobata HOM05D006701 ORTHO05D008617 9.3e-12 73.9 105 43.8
Manes.16G012400 Manihot esculenta HOM05D006701 ORTHO05D008617 1.2e-11 73.6 105 41.0
RcHm_v2.0_Chr5g0003981 Rosa chinensis HOM05D006701 ORTHO05D008617 1.2e-11 73.6 105 41.9
VMungo0465G0001 Vigna mungo HOM05D006701 ORTHO05D008617 1.2e-11 73.6 109 41.3
MD10G1314600 Malus domestica HOM05D006701 ORTHO05D008617 2.1e-11 72.8 105 42.9
Nn1g07026 Nelumbo nucifera HOM05D006701 ORTHO05D008617 2.1e-11 72.8 99 43.4
Lsat_1_v5_gn_1_127621 Lactuca sativa HOM05D006701 ORTHO05D008617 3.5e-11 72.0 105 47.6
HPP92_016091 Vanilla planifolia HOM05D006701 ORTHO05D008617 3.5e-11 72.0 105 38.1
Glyma.20G141300 Glycine max HOM05D006701 ORTHO05D008617 6.0e-11 71.2 105 42.9
TWI63G0425 Tripterygium wilfordii HOM05D006701 ORTHO05D008617 6.0e-11 71.2 104 43.3
Rhsim02G0112100 Rhododendron simsii HOM05D006701 ORTHO05D008617 7.9e-11 70.9 100 47.0
Lj5g0019737 Lotus japonicus HOM05D006701 ORTHO05D008617 1.0e-10 70.5 105 43.8
arahy.Tifrunner.gnm1.ann1.UR5FKI Arachis hypogaea HOM05D006701 ORTHO05D008617 2.3e-10 69.3 109 40.4
ECA248G0757 Erigeron canadensis HOM05D006701 ORTHO05D008617 2.3e-10 69.3 105 42.9
Lalb_Chr21g0307831 Lupinus albus HOM05D006701 ORTHO05D008617 2.3e-10 69.3 107 40.2
Os12g0258200 Oryza sativa ssp. japonica HOM05D006701 ORTHO05D008617 2.3e-10 69.3 105 38.1
Eucgr.D00243 Eucalyptus grandis HOM05D006701 ORTHO05D008617 3.0e-10 68.9 94 41.5
Lalb_Chr02g0144601 Lupinus albus HOM05D006701 ORTHO05D008617 3.0e-10 68.9 105 40.0
CDE06G0720 Ceratophyllum demersum HOM05D006701 ORTHO05D008617 3.9e-10 68.6 105 37.1
ATR0109G013 Amborella trichopoda HOM05D006701 ORTHO05D008617 8.7e-10 67.4 103 41.7
EL10Ac8g19893 Beta vulgaris HOM05D006701 ORTHO05D008617 1.1e-09 67.0 102 40.2
unitig_37.g12143 Utricularia gibba HOM05D006701 ORTHO05D008617 1.5e-09 66.6 105 38.1
arahy.Tifrunner.gnm1.ann1.BJ0GJS Arachis hypogaea HOM05D006701 ORTHO05D008617 2.5e-09 65.9 105 40.0
MBI02_g10102_MAGBIO Magnolia biondii HOM05D006701 ORTHO05D008617 2.5e-09 65.9 103 36.9
Haze_06735 Corylus avellana HOM05D006701 ORTHO05D008617 4.3e-09 65.1 107 37.4
Haze_06739 Corylus avellana HOM05D006701 ORTHO05D008617 4.3e-09 65.1 107 37.4
Sc05g0008880 Simmondsia chinensis HOM05D006701 ORTHO05D008617 7.4e-09 64.3 65 49.2
Aqoxy1G03688 Aquilegia oxysepala HOM05D006701 ORTHO05D008617 9.6e-09 63.9 105 37.1
Atru.chr10.2147 Acer truncatum HOM05D006701 ORTHO05D008617 2.8e-08 62.4 65 52.3
Psat6g210280 Pisum sativum HOM05D006701 ORTHO05D008617 3.7e-08 62.0 106 38.7
Ah.09g235330 Amaranthus hybridus HOM05D006701 ORTHO05D008617 6.2e-08 61.2 109 40.4
AUR62012642 Chenopodium quinoa HOM05D006701 ORTHO05D008617 8.1e-08 60.8 80 45.0
Ca_10984_v3 Cicer arietinum L. HOM05D006701 ORTHO05D008617 8.1e-08 60.8 118 34.7
Ca_11004_v3 Cicer arietinum L. HOM05D006701 ORTHO05D008617 8.1e-08 60.8 118 34.7
AUR62022013 Chenopodium quinoa HOM05D006701 ORTHO05D008617 2.4e-07 59.3 80 43.8
Mapoly0055s0055 Marchantia polymorpha HOM05D006701 ORTHO05D008617 3.1e-07 58.9 102 37.3
TAR629G3520 Trochodendron aralioides HOM05D006701 ORTHO05D008617 3.1e-07 58.9 51 60.8
Pp3c15_12260 Physcomitrium patens HOM05D006701 ORTHO05D008617 5.3e-07 58.2 100 37.0
TPR.G5504 Trifolium pratense HOM05D006701 ORTHO05D008617 9.0e-07 57.4 106 36.8
Medtr1g105540 Medicago truncatula HOM05D006701 ORTHO05D008617 1.5e-06 56.6 106 36.8
Actinidia11837 Actinidia chinensis HOM05D006701 ORTHO05D008617 5.8e-06 54.7 93 38.7


User provided reference genes

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