Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p19910 Brassica napus HOM05D015966 ORTHO05D019956 3.3e-56 221.5 113 100.0
BolC9t54896H Brassica oleracea HOM05D015966 ORTHO05D019956 1.8e-49 199.1 113 92.9
C06p17560 Brassica napus HOM05D015966 ORTHO05D019956 2.6e-48 195.3 113 91.2
BolC6t36950H Brassica oleracea HOM05D015966 ORTHO05D019956 2.6e-48 195.3 113 91.2
C03p66290 Brassica napus HOM05D015966 ORTHO05D019956 2.4e-46 188.7 113 89.4
BolC3t18901H Brassica oleracea HOM05D015966 ORTHO05D019956 2.4e-46 188.7 113 89.4
BcaC04g22383 Brassica carinata HOM05D015966 ORTHO05D019956 7.7e-37 157.1 93 90.3
BcaC08g44329 Brassica carinata HOM05D031856 ORTHO05D000065 2.7e-29 132.1 71 97.2
Sp3g15220 Schrenkiella parvula HOM05D001728 ORTHO05D004174 5.4e-22 107.8 78 74.4
BcaC09g48652 Brassica carinata HOM05D001728 ORTHO05D004174 3.5e-21 105.1 74 78.4
BolC1t04696H Brassica oleracea HOM05D001728 ORTHO05D004174 3.5e-21 105.1 74 78.4
C01p47260 Brassica napus HOM05D001728 ORTHO05D004174 1.0e-20 103.6 74 77.0
A01p37320 Brassica napus HOM05D001728 ORTHO05D004174 1.7e-20 102.8 78 73.1
BraA01t03790Z Brassica rapa HOM05D001728 ORTHO05D004174 1.7e-20 102.8 78 73.1
Thhalv10021196m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 1.7e-20 102.8 78 73.1
BcaB05g22858 Brassica carinata HOM05D015966 ORTHO05D092322 3.0e-20 102.1 71 76.1
CARHR092250 Cardamine hirsuta HOM05D001728 ORTHO05D004174 5.6e-19 97.8 79 72.2
AL3G29980 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 1.8e-17 92.8 78 65.4
AT3G17000 Arabidopsis thaliana HOM05D001728 ORTHO05D004174 4.0e-17 91.7 69 66.7
Carub.0003s1675 Capsella rubella HOM05D001728 ORTHO05D004174 1.2e-13 80.1 75 65.3
Thhalv10025677m.g Eutrema salsugineum HOM05D001728 ORTHO05D004174 2.5e-11 72.4 71 59.2
Aa31LG8G4040 Aethionema arabicum HOM05D001728 ORTHO05D004174 3.3e-11 72.0 79 49.4
THA.LOC104820301 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 9.5e-11 70.5 76 56.6
Potri.008G106300 Populus trichocarpa HOM05D001728 ORTHO05D004174 2.1e-10 69.3 77 54.5
BcaNung00213 Brassica carinata HOM05D001728 ORTHO05D004174 4.7e-10 68.2 82 54.9
Ciclev10005518m.g Citrus clementina HOM05D001728 ORTHO05D004174 6.2e-10 67.8 75 52.0
Sabra08G0080000 Salix brachista HOM05D001728 ORTHO05D004174 8.1e-10 67.4 68 58.8
Sp7g14760 Schrenkiella parvula HOM05D001728 ORTHO05D004174 1.4e-09 66.6 61 62.3
C05p49430 Brassica napus HOM05D056811 ORTHO05D042642 1.8e-09 66.2 47 70.2
BolC5t33689H Brassica oleracea HOM05D056811 ORTHO05D042642 1.8e-09 66.2 47 70.2
Cpa.g.sc9.71 Carica papaya HOM05D001728 ORTHO05D004174 1.8e-09 66.2 76 51.3
Potri.010G143900 Populus trichocarpa HOM05D001728 ORTHO05D004174 1.8e-09 66.2 68 54.4
AL7G38800 Arabidopsis lyrata HOM05D001728 ORTHO05D004174 2.3e-09 65.9 51 68.6
CSS0020178 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 3.1e-09 65.5 77 53.2
Atru.chr4.3016 Acer truncatum HOM05D001728 ORTHO05D004174 4.0e-09 65.1 75 50.7
Manes.03G203400 Manihot esculenta HOM05D001728 ORTHO05D004174 5.2e-09 64.7 61 52.5
Sabra10G0111100 Salix brachista HOM05D001728 ORTHO05D004174 5.2e-09 64.7 68 54.4
Hund11964 Selenicereus undatus HOM05D001728 ORTHO05D004174 6.8e-09 64.3 65 47.7
CARHR222630 Cardamine hirsuta HOM05D001728 ORTHO05D004174 1.5e-08 63.2 65 56.9
Prupe.1G119000 Prunus persica HOM05D001728 ORTHO05D004174 1.5e-08 63.2 75 45.3
THA.LOC104818887 Tarenaya hassleriana HOM05D001728 ORTHO05D004174 1.5e-08 63.2 69 49.3
A01p21340 Brassica napus HOM05D001728 ORTHO05D004174 2.0e-08 62.8 82 51.2
BraA01t02040Z Brassica rapa HOM05D001728 ORTHO05D004174 2.0e-08 62.8 82 51.2
Aa31LG10G5870 Aethionema arabicum HOM05D001728 ORTHO05D004174 2.6e-08 62.4 74 54.1
BcaC09g50319 Brassica carinata HOM05D001728 ORTHO05D004174 3.4e-08 62.0 82 51.2
C01p26690 Brassica napus HOM05D001728 ORTHO05D004174 3.4e-08 62.0 82 51.2
HanXRQChr05g0148261 Helianthus annuus HOM05D001728 ORTHO05D004174 3.4e-08 62.0 69 50.7
HanXRQChr15g0466661 Helianthus annuus HOM05D001728 ORTHO05D004174 3.4e-08 62.0 43 67.4
Manes.15G005200 Manihot esculenta HOM05D001728 ORTHO05D004174 3.4e-08 62.0 76 44.7
PSO170G6117 Papaver somniferum HOM05D001728 ORTHO05D004174 3.4e-08 62.0 65 49.2
PSO357G0012 Papaver somniferum HOM05D001728 ORTHO05D004174 3.4e-08 62.0 65 49.2
RcHm_v2.0_Chr4g0424811 Rosa chinensis HOM05D001728 ORTHO05D004174 7.5e-08 60.8 78 48.7
MD16G1155400 Malus domestica HOM05D001728 ORTHO05D004174 9.9e-08 60.5 75 44.0
Rhsim02G0004600 Rhododendron simsii HOM05D001728 ORTHO05D004174 9.9e-08 60.5 75 44.0
BcaB08g36357 Brassica carinata HOM05D015966 ORTHO05D000065 1.3e-07 60.1 40 75.0
BolC1t02610H Brassica oleracea HOM05D001728 ORTHO05D004174 1.3e-07 60.1 82 50.0
Carub.0007s2527 Capsella rubella HOM05D001728 ORTHO05D004174 1.3e-07 60.1 71 53.5
ECA246G2493 Erigeron canadensis HOM05D001728 ORTHO05D004174 1.3e-07 60.1 67 50.7
Gohir.D10G178500 Gossypium hirsutum HOM05D001728 ORTHO05D004174 1.3e-07 60.1 68 48.5
Thecc.04G299100 Theobroma cacao HOM05D001728 ORTHO05D004174 1.3e-07 60.1 75 48.0
Gohir.A10G171400 Gossypium hirsutum HOM05D001728 ORTHO05D004174 1.7e-07 59.7 68 48.5
ClCG05G006510 Citrullus lanatus HOM05D001728 ORTHO05D004174 2.2e-07 59.3 73 41.1
TWI53G1778 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 2.9e-07 58.9 71 43.7
GSVIVG01035008001 Vitis vinifera HOM05D001728 ORTHO05D004174 2.9e-07 58.9 75 45.3
CSS0047464 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 3.7e-07 58.5 68 47.1
Gohir.A09G234900 Gossypium hirsutum HOM05D001728 ORTHO05D004174 3.7e-07 58.5 56 57.1
Hund03118 Selenicereus undatus HOM05D001728 ORTHO05D004174 3.7e-07 58.5 65 43.1
Cfa015326 Carpinus fangiana HOM05D001728 ORTHO05D004174 4.9e-07 58.2 62 48.4
CiPaw.02G075700 Carya illinoinensis HOM05D001728 ORTHO05D004174 4.9e-07 58.2 52 51.9
Lj3A830T25 Lonicera japonica HOM05D001728 ORTHO05D004174 6.4e-07 57.8 52 57.7
MD13G1155700 Malus domestica HOM05D001728 ORTHO05D004174 6.4e-07 57.8 75 41.3
Sed0012381 Sechium edule HOM05D001728 ORTHO05D004174 6.4e-07 57.8 74 44.6
Hma1.2p1_0013F.1_g008660 Hydrangea macrophylla HOM05D001728 ORTHO05D004174 8.3e-07 57.4 66 45.5
MBI19_g07231_MAGBIO Magnolia biondii HOM05D001728 ORTHO05D004174 8.3e-07 57.4 66 45.5
CsaV3_3G015120 Cucumis sativus L. HOM05D001728 ORTHO05D004174 1.4e-06 56.6 42 61.9
FAN07G1735 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.4e-06 56.6 62 56.5
Gohir.D09G235700 Gossypium hirsutum HOM05D001728 ORTHO05D004174 1.4e-06 56.6 56 55.4
Gorai.006G258700 Gossypium raimondii HOM05D001728 ORTHO05D004174 1.4e-06 56.6 56 55.4
FvH4_4g19560 Fragaria vesca HOM05D001728 ORTHO05D004174 1.9e-06 56.2 64 53.1
FAN12G2115 Fragaria x ananassa HOM05D001728 ORTHO05D004174 1.9e-06 56.2 64 53.1
Gorai.011G199600 Gossypium raimondii HOM05D001728 ORTHO05D004174 1.9e-06 56.2 60 55.0
vmacro15187 Vaccinium macrocarpon HOM05D001728 ORTHO05D004174 1.9e-06 56.2 75 41.3
Actinidia13363 Actinidia chinensis HOM05D001728 ORTHO05D004174 2.4e-06 55.8 76 46.1
MELO3C006710.2 Cucumis melo HOM05D001728 ORTHO05D004174 2.4e-06 55.8 66 42.4
Duzib052G1178 Durio zibethinus HOM05D001728 ORTHO05D004174 2.4e-06 55.8 43 65.1
Duzib151G0474 Durio zibethinus HOM05D001728 ORTHO05D004174 2.4e-06 55.8 59 54.2
Eucgr.A00356 Eucalyptus grandis HOM05D001728 ORTHO05D004174 2.4e-06 55.8 43 62.8
Nitab4.5_0002150g0220 Nicotiana tabacum HOM05D001728 ORTHO05D004174 2.4e-06 55.8 60 46.7
TWI73G0756 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 2.4e-06 55.8 63 44.4
Haze_01289 Corylus avellana HOM05D001728 ORTHO05D004174 3.2e-06 55.5 62 45.2
Nn3g21703 Nelumbo nucifera HOM05D001728 ORTHO05D004174 3.2e-06 55.5 68 45.6
Nitab4.5_0013613g0010 Nicotiana tabacum HOM05D001728 ORTHO05D004174 3.2e-06 55.5 47 55.3
Actinidia14261 Actinidia chinensis HOM05D001728 ORTHO05D004174 4.1e-06 55.1 77 45.5
CiPaw.01G139100 Carya illinoinensis HOM05D001728 ORTHO05D004174 4.1e-06 55.1 59 50.8
Sc19g0003160 Simmondsia chinensis HOM05D001728 ORTHO05D004174 4.1e-06 55.1 47 61.7
Aqoxy2G02747 Aquilegia oxysepala HOM05D001728 ORTHO05D004174 5.4e-06 54.7 65 50.8
CSS0014848 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004174 5.4e-06 54.7 57 47.4
Duzib212G0357 Durio zibethinus HOM05D001728 ORTHO05D004174 5.4e-06 54.7 81 45.7
Lsat_1_v5_gn_1_41000 Lactuca sativa HOM05D001728 ORTHO05D004174 5.4e-06 54.7 33 69.7
Lj6C689T11 Lonicera japonica HOM05D001728 ORTHO05D004174 5.4e-06 54.7 74 45.9
SGA_v2.0_scaffold18G08401 Striga asiatica HOM05D001728 ORTHO05D004174 5.4e-06 54.7 45 57.8
TWI09G0044 Tripterygium wilfordii HOM05D001728 ORTHO05D004174 5.4e-06 54.7 66 43.9
Dinv44292 Davidia involucrata HOM05D001728 ORTHO05D004174 7.1e-06 54.3 63 46.0
Sed0009760 Sechium edule HOM05D001728 ORTHO05D004174 7.1e-06 54.3 78 37.2
CANSAT78G2180 Cannabis sativa HOM05D001728 ORTHO05D004174 9.2e-06 53.9 32 71.9
Peaxi162Scf00017g00816 Petunia axillaris HOM05D001728 ORTHO05D004174 9.2e-06 53.9 47 53.2


User provided reference genes

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