Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.3e-115 419.9 234 100.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.5e-114 416.4 234 99.6
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 7.3e-114 414.1 234 98.7
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 4.0e-112 408.3 234 98.3
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 4.0e-112 408.3 234 98.3
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.3e-107 392.5 236 95.3
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 5.1e-99 364.8 236 88.1
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.2e-97 360.1 237 87.3
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.1e-97 359.4 235 86.4
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.4e-96 356.7 235 84.7
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 5.2e-96 354.8 235 85.5
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 5.6e-90 334.7 236 83.1
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.8e-89 332.4 235 82.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.3e-81 307.0 237 74.7
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.3e-81 307.0 240 75.0
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.8e-75 286.6 238 71.4
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 4.8e-73 278.5 238 68.9
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.1e-72 277.3 238 71.4
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.1e-72 277.3 237 70.9
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.4e-72 276.2 234 70.5
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.9e-72 274.6 239 69.9
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 4.5e-71 271.9 234 66.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.3e-70 270.4 234 66.2
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.2e-70 269.6 237 70.5
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.8e-70 268.9 237 70.0
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.1e-69 267.3 234 66.7
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.9e-69 266.5 240 62.9
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 2.4e-69 266.2 254 65.0
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 9.3e-69 264.2 234 68.4
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.2e-68 263.8 235 68.1
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.6e-68 263.5 243 67.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 2.1e-68 263.1 234 68.8
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 2.7e-68 262.7 233 69.1
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 2.7e-68 262.7 239 67.4
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.8e-67 260.0 235 67.7
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 3.9e-67 258.8 231 68.4
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 5.1e-67 258.5 238 68.1
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 5.1e-67 258.5 238 68.1
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 8.7e-67 257.7 237 62.0
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.1e-66 257.3 240 65.4
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.5e-66 256.1 242 64.9
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.5e-66 256.1 231 68.0
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.5e-66 256.1 234 67.1
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 5.6e-66 255.0 272 61.8
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 9.6e-66 254.2 238 67.2
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 9.6e-66 254.2 236 66.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-65 253.4 183 74.3
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-65 253.4 183 74.3
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 2.1e-65 253.1 231 67.1
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 4.8e-65 251.9 245 60.4
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 6.2e-65 251.5 182 79.7
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 8.1e-65 251.1 239 58.6
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.1e-64 250.8 238 66.0
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.8e-64 250.0 242 66.1
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.3e-64 248.4 229 66.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 9.0e-64 247.7 236 64.0
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 9.0e-64 247.7 239 58.6
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.5e-63 246.9 236 61.0
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 2.0e-63 246.5 197 74.1
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 4.5e-63 245.4 188 76.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.0e-62 244.2 238 64.3
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.3e-62 243.8 182 78.0
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 2.2e-62 243.0 171 80.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 3.8e-62 242.3 238 56.7
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.9e-62 241.9 236 59.3
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 8.4e-62 241.1 230 58.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.4e-61 240.4 238 61.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.9e-61 240.0 239 56.5
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.5e-61 239.6 245 59.6
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.5e-61 239.6 182 75.8
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.2e-61 239.2 245 56.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.2e-61 239.2 236 60.6
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.2e-61 238.8 235 58.7
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 5.5e-61 238.4 192 65.1
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 9.3e-61 237.7 180 76.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 9.3e-61 237.7 235 65.1
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 9.3e-61 237.7 224 68.3
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.7e-60 236.1 224 66.5
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.7e-60 236.1 186 74.2
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 2.7e-60 236.1 225 63.6
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 7.9e-60 234.6 234 61.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.0e-59 234.2 236 57.6
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.0e-59 232.6 196 63.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 3.9e-59 232.3 270 51.5
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 3.9e-59 232.3 183 68.9
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.1e-58 230.7 228 59.6
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 235 62.1
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.9e-58 229.9 235 62.1
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.5e-58 229.6 183 73.2
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.5e-58 229.6 239 58.2
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 5.7e-58 228.4 186 71.5
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.8e-57 226.1 182 65.4
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.8e-57 225.3 252 60.7
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 6.3e-57 224.9 183 66.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 6.9e-56 221.5 248 54.4
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.0e-54 217.6 216 65.3
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.4e-53 213.8 201 61.7
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.5e-53 213.0 195 57.9
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.2e-53 212.6 187 65.8
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 5.5e-53 211.8 252 51.6
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.8e-51 206.8 183 63.9
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 2.4e-48 196.4 141 73.0
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 5.3e-48 195.3 308 43.2
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.0e-47 193.4 168 63.1
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.7e-47 191.4 234 56.0
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.2e-45 186.0 208 51.4
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.2e-44 184.1 235 47.2
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.6e-44 183.7 181 56.4
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.1e-40 167.9 130 77.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.4e-37 160.6 133 63.2
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 4.7e-36 155.6 261 47.1
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.3e-35 153.3 188 50.5
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.3e-34 149.4 125 64.8
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.7e-34 147.9 174 50.0
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.1e-32 144.4 96 76.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.1e-32 142.5 96 75.0
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-31 140.2 92 76.1
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.3e-30 137.5 98 67.3
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.8e-25 119.0 72 79.2
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.4e-24 116.7 199 40.7
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 4.1e-24 115.9 152 48.7
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 2.0e-23 113.6 171 39.8
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 5.9e-23 112.1 236 35.6
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 7.7e-23 111.7 236 35.2
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.2e-22 110.2 79 64.6
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 3.8e-22 109.4 100 54.0
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.1e-21 107.8 257 32.7
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.2e-21 106.3 220 38.6
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 4.2e-21 105.9 97 71.1
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.2e-20 104.4 135 48.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.1e-20 103.6 237 35.0
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.3e-17 91.7 65 73.8
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 9.1e-16 88.2 162 37.7
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 6.5e-14 82.0 130 37.7
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.2e-09 67.0 194 30.4
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.8e-09 66.6 109 40.4
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 3.7e-09 66.2 108 39.8
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 8.3e-09 65.1 51 66.7
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.1e-08 64.7 119 37.8
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.3e-06 57.8 48 58.3
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.6e-06 55.1 55 52.7


User provided reference genes

Program Settings