Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 2.6e-225 785.0 395 100.0
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 2.6e-220 768.5 395 97.7
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 2.6e-220 768.5 395 97.7
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 5.3e-218 760.8 395 97.2
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.3e-216 756.1 395 96.7
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.0e-208 729.9 398 94.5
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.0e-205 718.4 390 91.8
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 2.8e-203 711.8 407 89.4
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 9.5e-199 696.8 405 87.7
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.2e-195 685.6 405 86.2
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.8e-194 682.6 401 85.8
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.6e-193 679.5 385 89.4
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.2e-186 655.2 403 80.1
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 2.3e-181 639.0 401 81.8
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.2e-180 636.7 407 81.8
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 6.6e-176 620.9 423 77.1
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 2.1e-174 615.9 401 77.8
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.1e-173 613.6 395 78.0
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.4e-173 612.5 397 76.6
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.1e-173 612.1 395 77.5
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.5e-172 609.8 395 77.0
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 4.4e-172 608.2 347 85.0
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 5.8e-172 607.8 380 77.9
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 2.2e-171 605.9 356 82.3
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 2.9e-171 605.5 394 76.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.4e-170 602.4 352 82.7
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 7.1e-170 600.9 421 73.2
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 7.1e-170 600.9 402 73.6
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 9.2e-170 600.5 402 73.1
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.2e-169 600.1 397 75.6
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.2e-169 600.1 356 80.3
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.6e-169 599.7 354 81.9
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 3.9e-168 595.1 385 75.3
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 6.6e-168 594.3 404 72.5
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 6.6e-168 594.3 390 74.9
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 8.7e-168 594.0 387 75.5
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 5.6e-167 591.3 394 73.9
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 9.6e-167 590.5 314 92.4
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.6e-166 589.7 390 73.6
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.1e-166 589.3 337 84.9
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 2.1e-166 589.3 400 73.5
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 6.2e-166 587.8 386 75.1
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 8.1e-166 587.4 390 74.1
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.1e-165 587.0 398 73.1
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 2.4e-165 585.9 391 74.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 2.4e-165 585.9 406 71.9
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 6.9e-165 584.3 399 72.4
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 4.4e-164 581.6 356 77.5
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 5.8e-164 581.3 403 71.7
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.7e-163 579.7 396 72.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.9e-163 578.9 350 79.1
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.9e-162 576.2 350 78.9
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.9e-162 576.2 393 72.3
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 2.4e-162 575.9 356 78.4
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 2.4e-162 575.9 369 73.7
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 4.2e-162 575.1 409 70.7
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.1e-161 572.8 400 70.8
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.7e-161 572.4 410 69.3
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.3e-160 570.1 350 76.9
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.3e-160 570.1 348 79.0
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.7e-160 569.7 392 71.4
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 3.0e-160 568.9 402 71.6
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 6.6e-160 567.8 368 76.1
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.1e-159 567.0 349 76.5
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.1e-159 567.0 353 78.2
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.5e-159 566.6 395 72.4
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 2.5e-159 565.8 369 72.9
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 3.3e-159 565.5 370 73.2
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.3e-158 563.5 350 76.6
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.3e-158 563.5 349 76.8
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.6e-158 563.1 369 74.5
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 2.8e-158 562.4 376 73.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 3.6e-158 562.0 389 70.7
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.6e-158 562.0 390 72.6
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 4.8e-158 561.6 401 70.8
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.1e-157 560.5 339 79.6
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.1e-157 560.5 356 75.6
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 1.8e-157 559.7 404 70.5
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.8e-157 559.7 392 71.2
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.8e-157 559.7 406 70.7
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 2.4e-157 559.3 408 70.1
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-157 558.5 380 72.9
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 5.3e-157 558.1 405 69.4
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 2.0e-156 556.2 392 69.4
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.0e-156 556.2 403 69.5
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 3.4e-156 555.4 405 68.9
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.4e-154 550.1 343 77.0
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.9e-154 549.7 351 76.9
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 2.4e-154 549.3 396 69.9
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 9.3e-154 547.4 395 69.9
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.7e-153 545.8 375 72.0
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 5.1e-152 541.6 347 77.5
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 6.7e-152 541.2 327 79.2
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.5e-151 540.0 354 74.9
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 2.8e-150 535.8 395 67.8
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.8e-150 535.0 438 63.5
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.6e-148 529.3 346 74.3
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 4.5e-148 528.5 344 75.0
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 2.2e-147 526.2 353 72.5
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.2e-147 526.2 373 68.6
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 2.9e-147 525.8 314 79.9
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.4e-146 523.5 406 67.2
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.9e-146 523.1 389 67.6
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.2e-145 520.4 382 69.1
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 6.7e-144 514.6 352 70.5
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.9e-143 513.1 419 64.7
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 3.3e-143 512.3 348 71.6
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 7.4e-143 511.1 356 71.6
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.8e-141 506.5 370 67.8
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 9.0e-141 504.2 356 70.5
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 9.0e-141 504.2 461 59.0
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 5.8e-140 501.5 344 69.8
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 4.9e-139 498.4 308 82.8
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.5e-135 486.1 573 48.3
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 6.9e-133 478.0 393 64.6
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 1.0e-131 474.2 374 63.4
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.0e-128 464.2 292 77.7
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.9e-127 459.9 346 65.0
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.5e-111 407.1 364 59.9
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.3e-72 276.9 194 72.7
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 2.1e-68 263.8 147 81.6
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 1.7e-67 260.8 373 43.2
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 7.8e-60 235.3 214 55.1
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 3.3e-58 229.9 301 47.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 7.6e-55 218.8 190 63.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 6.4e-54 215.7 180 61.1
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 7.8e-44 182.2 112 79.5
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 9.3e-37 158.7 112 70.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.1e-33 147.5 194 45.4
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 9.0e-32 142.1 352 29.0
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 4.3e-26 123.2 84 69.0
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 8.2e-25 119.0 79 68.4
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 6.1e-20 102.8 53 90.6
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.7e-09 68.2 95 43.2
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.7e-09 68.2 45 68.9
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.4e-08 64.3 69 44.9


User provided reference genes

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