Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 0.0e+00 1699.5 962 100.0
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 0.0e+00 1650.6 973 96.8
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 0.0e+00 1644.4 973 96.7
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 0.0e+00 1531.2 971 89.9
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 0.0e+00 1510.7 981 88.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 0.0e+00 1136.7 975 72.7
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.0e-226 790.0 983 55.4
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.2e-162 578.2 1125 45.9
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 2.1e-143 514.2 980 42.6
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.1e-130 471.1 988 41.3
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.3e-129 468.4 984 41.1
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.3e-129 468.4 984 41.1
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.8e-105 388.3 1154 35.6
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 2.8e-103 380.9 1186 36.3
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.7e-97 359.4 1111 35.4
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.0e-81 309.3 1046 33.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.7e-63 248.8 1043 30.1
A07p05110 Brassica napus HOM05D008497 ORTHO05D003355 1.2e-37 162.9 593 33.9
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.3e-31 142.9 1009 26.8
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.6e-29 136.0 91 67.0
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.0e-28 133.3 90 66.7
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.0e-28 133.3 90 66.7
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.1e-28 131.0 1211 25.5
BcaC04g22710 Brassica carinata HOM05D008497 ORTHO05D027096 1.9e-22 112.5 116 60.3
BolC9t54519H Brassica oleracea HOM05D008497 ORTHO05D027096 1.9e-22 112.5 116 60.3
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.1e-19 103.2 351 32.5
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.3e-19 101.7 99 49.5
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.3e-19 101.3 192 35.9
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 8.9e-17 93.6 89 48.3
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.4e-16 91.7 96 51.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.4e-16 91.3 109 45.0
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 5.8e-16 90.9 114 46.5
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 9.9e-16 90.1 100 45.0
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 9.9e-16 90.1 159 39.6
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 1.3e-15 89.7 177 35.6
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.2e-15 89.0 89 50.6
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.9e-15 88.6 152 36.2
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.9e-15 88.6 90 48.9
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.8e-15 88.2 102 46.1
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 4.9e-15 87.8 460 24.8
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 8.4e-15 87.0 98 42.9
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 8.4e-15 87.0 102 42.2
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-14 86.7 90 46.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.1e-14 86.7 89 48.3
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.1e-14 86.7 101 42.6
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 1.1e-14 86.7 118 45.8
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.4e-14 86.3 99 46.5
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.9e-14 85.9 96 42.7
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.4e-14 85.5 89 48.3
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 3.2e-14 85.1 100 44.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.2e-14 85.1 99 46.5
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 3.2e-14 85.1 333 28.2
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.2e-14 84.7 150 35.3
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 5.4e-14 84.3 98 42.9
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 7.1e-14 84.0 99 43.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-13 83.2 220 34.5
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.6e-13 82.8 174 36.2
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.6e-13 82.8 133 37.6
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.1e-13 82.4 177 36.7
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.1e-13 82.4 99 42.4
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.1e-13 82.4 92 47.8
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.1e-13 82.4 99 41.4
BcaC06g31928 Brassica carinata HOM05D008497 ORTHO05D003355 4.6e-13 81.3 94 51.1
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.0e-13 80.9 92 45.7
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.0e-12 80.1 208 33.2
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.3e-12 79.7 220 30.9
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.7e-12 79.3 149 38.3
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 2.3e-12 79.0 240 30.4
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.0e-12 78.6 99 41.4
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 3.0e-12 78.6 89 46.1
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.9e-12 78.2 241 32.0
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 5.1e-12 77.8 89 44.9
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 5.1e-12 77.8 91 41.8
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 5.1e-12 77.8 94 42.6
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 8.7e-12 77.0 261 29.5
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.1e-11 76.6 100 38.0
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.9e-11 75.9 207 33.3
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.9e-11 75.9 90 42.2
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.3e-11 75.1 106 38.7
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 3.3e-11 75.1 88 42.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 3.3e-11 75.1 297 26.9
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 4.3e-11 74.7 96 38.5
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 4.3e-11 74.7 88 40.9
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.3e-11 74.7 115 40.0
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.3e-11 74.7 245 31.8
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.6e-11 74.3 286 28.0
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 9.6e-11 73.6 88 46.6
C09p16040 Brassica napus HOM05D008497 ORTHO05D027096 1.3e-10 73.2 69 60.9
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.6e-10 72.8 514 24.5
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 2.8e-10 72.0 284 27.8
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.2e-10 70.9 363 26.4
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 8.1e-10 70.5 205 30.7
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.1e-09 70.1 497 23.5
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.1e-09 70.1 306 25.5
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.1e-09 70.1 213 28.6
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.1e-09 70.1 88 50.0
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.4e-09 69.7 88 42.0
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.8e-09 69.3 88 44.3
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 2.4e-09 68.9 88 42.0
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 3.1e-09 68.6 340 26.8
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.1e-09 68.6 153 32.7
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 4.0e-09 68.2 134 32.1
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 4.0e-09 68.2 88 39.8
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.0e-09 68.2 88 42.0
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.0e-09 68.2 88 42.0
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 4.0e-09 68.2 109 37.6
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.0e-09 68.2 89 39.3
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 9.0e-09 67.0 94 37.2
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.5e-08 66.2 128 32.0
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.5e-08 66.2 463 22.5
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.0e-08 65.9 284 26.1
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.6e-08 65.5 111 35.1
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.6e-08 65.5 178 33.1
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.6e-08 65.5 77 42.9
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 2.6e-08 65.5 75 44.0
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.4e-08 65.1 223 27.4
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.4e-08 65.1 77 44.2
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 3.4e-08 65.1 77 44.2
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.8e-08 64.3 213 31.0
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 5.8e-08 64.3 88 37.5
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 5.8e-08 64.3 90 42.2
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 7.6e-08 63.9 311 26.7
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 7.6e-08 63.9 88 36.4
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 9.9e-08 63.5 101 35.6
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.7e-07 62.8 220 27.3
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.2e-07 62.4 259 28.6
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 8.4e-07 60.5 110 36.4
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 8.4e-07 60.5 87 34.5
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.4e-07 60.5 93 38.7
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.1e-06 60.1 88 38.6
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.1e-06 60.1 99 36.4
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.4e-06 59.7 491 24.2
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 1.9e-06 59.3 161 26.7
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 2.4e-06 58.9 187 29.9
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.4e-06 58.9 259 28.2
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.4e-06 58.9 93 38.7
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 3.2e-06 58.5 91 37.4
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.2e-06 58.2 101 33.7
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 7.1e-06 57.4 135 30.4
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 7.1e-06 57.4 86 37.2
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 9.3e-06 57.0 63 46.0
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 9.3e-06 57.0 93 35.5


User provided reference genes

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