Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 2.1e-125 452.6 268 94.8
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 2.1e-125 452.6 268 100.0
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 2.1e-125 452.6 268 100.0
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 9.2e-121 437.2 268 97.8
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 9.2e-121 437.2 268 97.8
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 1.6e-101 373.2 269 88.1
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 4.7e-93 345.1 272 80.9
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 1.2e-88 330.5 284 71.5
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 2.1e-80 303.1 270 73.0
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 1.8e-79 300.1 270 64.4
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 4.3e-78 295.4 270 71.9
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 1.3e-69 267.3 270 64.8
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 3.4e-67 259.2 283 61.5
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 6.7e-39 165.2 275 48.7
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 2.0e-38 163.7 276 50.4
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 3.1e-36 156.4 298 38.3
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.2e-35 154.5 271 41.3
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 1.2e-35 154.5 279 41.9
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 2.0e-35 153.7 204 45.6
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 2.0e-35 153.7 271 41.0
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 2.6e-35 153.3 298 41.6
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.6e-35 153.3 286 40.2
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 3.5e-35 152.9 339 38.6
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 4.5e-35 152.5 338 36.4
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 1.7e-34 150.6 350 40.6
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.7e-34 150.6 304 42.4
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 8.5e-34 148.3 306 40.5
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 8.5e-34 148.3 341 39.0
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 1.1e-33 147.9 345 40.0
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 2.5e-33 146.7 307 39.7
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 3.2e-33 146.4 359 37.9
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 4.2e-33 146.0 271 42.8
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 5.5e-33 145.6 273 37.0
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 7.2e-33 145.2 281 42.3
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.6e-32 144.1 300 39.7
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 2.1e-32 143.7 219 47.0
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 2.7e-32 143.3 326 41.4
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 2.7e-32 143.3 327 38.8
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 2.7e-32 143.3 289 40.8
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 2.7e-32 143.3 289 40.8
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 6.1e-32 142.1 315 34.3
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 8.0e-32 141.7 289 41.2
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 1.8e-31 140.6 313 39.3
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 4.0e-31 139.4 308 39.0
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 4.0e-31 139.4 334 38.9
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 4.0e-31 139.4 201 51.7
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 2.6e-30 136.7 266 42.5
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 3.4e-30 136.3 290 34.5
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 5.7e-30 135.6 327 33.0
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 1.3e-29 134.4 298 38.9
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 2.8e-29 133.3 296 37.2
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 2.8e-29 133.3 269 39.8
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 4.8e-29 132.5 252 44.0
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 6.3e-29 132.1 197 51.8
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 8.3e-29 131.7 269 39.4
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 8.3e-29 131.7 323 36.2
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 2.4e-28 130.2 362 36.5
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 2.4e-28 130.2 241 44.4
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 3.1e-28 129.8 236 42.8
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 7.0e-28 128.6 345 37.1
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 7.0e-28 128.6 301 33.2
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 2.0e-27 127.1 328 36.3
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 3.5e-27 126.3 340 38.2
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 3.5e-27 126.3 242 43.0
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 5.9e-27 125.6 258 41.9
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 1.7e-26 124.0 265 41.1
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 2.2e-26 123.6 201 38.8
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 2.2e-26 123.6 201 38.8
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 2.9e-26 123.2 239 42.3
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 5.0e-26 122.5 242 42.1
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 8.5e-26 121.7 332 36.1
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 1.5e-25 120.9 302 38.1
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 1.9e-25 120.6 286 37.8
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 1.9e-25 120.6 310 36.5
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 3.6e-24 116.3 332 30.7
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 8.0e-24 115.2 361 32.7
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 8.8e-23 111.7 290 37.2
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 2.8e-21 106.7 253 39.9
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 1.8e-20 104.0 282 36.9
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 1.6e-19 100.9 300 35.3
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 2.9e-18 96.7 298 32.6
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 6.6e-18 95.5 204 41.2
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 3.3e-17 93.2 276 35.5
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 5.5e-17 92.4 286 29.4
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 1.2e-16 91.3 125 47.2
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 2.8e-16 90.1 283 33.9
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 8.0e-16 88.6 241 36.5
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 1.4e-15 87.8 271 33.9
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 2.3e-15 87.0 243 36.6
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 1.5e-14 84.3 241 36.9
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.4e-12 77.8 51 68.6
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 9.2e-12 75.1 231 28.6
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 2.7e-11 73.6 233 25.3
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 2.9e-10 70.1 72 54.2
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.9e-09 67.4 245 27.8
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 2.1e-08 63.9 231 31.2
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.5e-06 57.8 134 42.5
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 2.6e-06 57.0 281 28.8
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 2.6e-06 57.0 213 31.5


User provided reference genes

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