Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.7e-190 669.5 404 100.0
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 2.0e-180 636.0 407 95.8
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 2.9e-179 632.1 410 95.1
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.2e-177 626.7 411 94.9
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 1.1e-170 603.6 408 92.2
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 1.0e-168 597.0 409 92.4
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 1.2e-167 593.6 411 91.2
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 3.4e-167 592.0 408 87.5
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 3.4e-167 592.0 410 87.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 4.4e-167 591.7 414 86.5
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.4e-165 586.6 410 88.0
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.8e-165 586.3 412 86.7
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 1.6e-161 573.2 415 83.6
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 6.1e-161 571.2 414 82.6
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.3e-158 563.5 411 81.5
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.4e-157 560.1 419 80.4
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.2e-153 547.0 410 78.8
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.1e-152 543.9 405 80.5
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 7.8e-132 474.6 411 70.1
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 2.1e-113 413.3 277 96.0
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 1.1e-106 391.0 408 56.4
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 1.4e-104 384.0 413 56.9
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 5.3e-104 382.1 409 54.5
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 5.3e-104 382.1 407 55.3
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 2.6e-103 379.8 419 53.5
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 5.8e-103 378.6 406 56.4
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.0e-102 377.9 406 56.4
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.2e-102 376.7 406 55.9
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.8e-102 375.9 409 54.3
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 3.8e-102 375.9 423 54.1
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.5e-101 373.2 409 52.8
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.2e-101 372.5 409 53.8
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 4.2e-101 372.5 418 56.0
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.5e-101 372.1 409 54.8
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.9e-99 365.9 412 52.7
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.5e-98 364.0 410 53.9
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 2.5e-98 363.2 411 55.0
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 5.7e-98 362.1 414 52.2
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 7.4e-98 361.7 413 53.0
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 7.4e-98 361.7 419 53.7
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 7.4e-98 361.7 418 52.6
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 9.7e-98 361.3 404 53.5
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 2.2e-97 360.1 419 52.5
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 2.2e-97 360.1 408 54.7
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 8.2e-97 358.2 406 55.2
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.1e-96 357.8 406 52.7
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-96 357.8 412 52.2
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 1.8e-96 357.1 411 52.6
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.8e-96 357.1 411 51.6
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 1.8e-96 357.1 404 53.2
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.8e-96 357.1 411 53.0
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 2.4e-96 356.7 411 52.8
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 2.0e-95 353.6 404 53.2
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 2.0e-95 353.6 413 53.0
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 3.4e-95 352.8 415 52.3
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.3e-94 350.9 411 52.3
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 2.2e-94 350.1 418 52.2
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.4e-93 347.4 415 56.6
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 1.9e-93 347.1 410 52.0
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 1.9e-93 347.1 407 51.6
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.5e-93 346.7 411 50.1
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 4.2e-93 345.9 404 56.2
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 9.3e-93 344.7 415 50.4
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.2e-92 344.4 418 51.0
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.2e-92 344.4 416 49.3
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.6e-92 344.0 412 51.7
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.1e-92 343.6 412 51.7
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 2.1e-92 343.6 417 54.4
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 2.1e-92 343.6 409 51.6
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 2.1e-92 343.6 448 47.3
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.7e-92 343.2 412 52.2
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.7e-92 343.2 412 51.5
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 1.0e-91 341.3 409 51.6
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.4e-91 340.9 407 52.3
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 1.8e-91 340.5 414 51.7
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.8e-91 340.5 424 49.8
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 6.7e-91 338.6 411 50.1
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 6.7e-91 338.6 412 51.2
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 1.1e-90 337.8 419 49.6
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.5e-90 337.4 405 50.4
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.5e-90 337.4 412 51.0
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 4.3e-90 335.9 413 50.8
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 9.7e-90 334.7 411 50.1
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.8e-89 333.2 419 49.6
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 2.4e-88 330.1 411 50.6
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 4.1e-88 329.3 415 50.1
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 5.3e-88 328.9 412 49.8
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 6.9e-88 328.6 419 49.2
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 1.2e-87 327.8 414 50.7
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.9e-86 323.2 430 49.3
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.1e-85 321.2 408 48.8
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 1.4e-85 320.9 432 48.4
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 4.2e-85 319.3 410 48.8
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 5.5e-85 318.9 399 50.1
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 7.2e-85 318.5 438 48.4
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 2.1e-84 317.0 415 54.2
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.7e-84 316.6 413 49.4
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 4.7e-84 315.8 415 53.5
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 1.8e-83 313.9 410 50.5
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.0e-83 313.2 404 50.0
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 3.9e-83 312.8 414 47.8
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 3.9e-83 312.8 417 51.6
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.1e-80 304.7 398 46.7
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 9.1e-80 301.6 270 61.1
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 3.4e-79 299.7 393 56.2
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 3.6e-76 289.7 405 46.2
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 4.7e-76 289.3 438 42.0
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.1e-74 284.6 419 44.6
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.1e-72 278.1 277 57.0
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 5.0e-70 269.2 409 46.9
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 8.5e-70 268.5 407 42.5
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 3.3e-66 256.5 406 45.6
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 6.5e-62 242.3 272 52.2
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 4.4e-58 229.6 212 75.0
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 3.6e-52 209.9 425 37.6
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.5e-45 188.0 397 35.8
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 3.6e-44 183.3 493 36.7
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 2.7e-39 167.2 241 43.6
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 2.7e-39 167.2 241 43.6
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 2.7e-39 167.2 241 43.6
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 6.0e-39 166.0 294 40.1
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 3.0e-38 163.7 548 30.1
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.9e-37 161.0 142 63.4
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.1e-35 155.2 417 32.4
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 5.2e-35 152.9 146 57.5
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.2e-31 141.7 142 58.5
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.6e-28 131.3 405 32.6
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 1.1e-27 128.6 207 41.5
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.4e-27 128.3 308 34.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 2.9e-17 94.0 374 29.1
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 2.9e-17 94.0 374 29.1
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.5e-13 80.9 108 49.1
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.3e-13 80.5 94 48.9
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 5.8e-10 69.7 38 81.6
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 1.0e-06 58.9 311 26.0
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 8.7e-06 55.8 78 42.3


User provided reference genes

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