Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p18240 Brassica napus HOM05D009862 ORTHO05D033657 4.9e-82 307.8 156 100.0
BolC2t11493H Brassica oleracea HOM05D009862 ORTHO05D018588 9.2e-81 303.5 156 98.7
C03p78740 Brassica napus HOM05D009862 ORTHO05D018588 2.7e-80 302.0 156 98.7
A05p05690 Brassica napus HOM05D009862 ORTHO05D018588 5.6e-78 294.3 156 95.5
A05p19230 Brassica napus HOM05D009862 ORTHO05D018588 5.6e-78 294.3 156 95.5
C09p21100 Brassica napus HOM05D009862 ORTHO05D018588 6.2e-77 290.8 156 94.2
BraA07t28641Z Brassica rapa HOM05D009862 ORTHO05D033657 3.4e-75 285.0 156 94.9
BraA05t20174Z Brassica rapa HOM05D009862 ORTHO05D018588 7.6e-75 283.9 156 94.9
A09p17710 Brassica napus HOM05D009862 ORTHO05D018588 3.8e-74 281.6 156 93.6
BcaC01g00346 Brassica carinata HOM05D009862 ORTHO05D018588 8.4e-74 280.4 198 76.8
BolC3t21354H Brassica oleracea HOM05D009862 ORTHO05D033657 1.4e-65 253.1 156 84.6
A05p12350 Brassica napus HOM05D009862 ORTHO05D016026 1.9e-41 172.9 88 97.7
BraA08t34631Z Brassica rapa HOM05D007004 ORTHO05D009040 3.1e-20 102.4 87 72.4
BcaC01g01680 Brassica carinata HOM05D007004 ORTHO05D009040 5.9e-19 98.2 87 70.1
C03p73090 Brassica napus HOM05D007004 ORTHO05D009040 5.9e-19 98.2 87 67.8
BolC3t19604H Brassica oleracea HOM05D007004 ORTHO05D009040 5.9e-19 98.2 87 70.1
A08p26860 Brassica napus HOM05D007004 ORTHO05D009040 7.7e-19 97.8 86 69.8
Sp1g22950 Schrenkiella parvula HOM05D007004 ORTHO05D009040 1.7e-18 96.7 55 87.3
BcaB03g12035 Brassica carinata HOM05D007004 ORTHO05D009040 2.2e-18 96.3 56 92.9
Thhalv10008135m.g Eutrema salsugineum HOM05D007004 ORTHO05D009040 3.8e-18 95.5 55 85.5
CARHR026230 Cardamine hirsuta HOM05D007004 ORTHO05D009040 2.7e-16 89.4 55 78.2
CARHR026200 Cardamine hirsuta HOM05D009862 ORTHO05D009040 1.0e-15 87.4 55 74.5
AT1G25290 Arabidopsis thaliana HOM05D007004 ORTHO05D009040 1.8e-15 86.7 55 74.5
Carub.0001s2526 Capsella rubella HOM05D007004 ORTHO05D009040 8.8e-15 84.3 55 76.4
A04p21840 Brassica napus HOM05D009862 ORTHO05D021984 2.6e-14 82.8 86 58.1
A03p03900 Brassica napus HOM05D009862 ORTHO05D021984 4.4e-14 82.0 86 57.0
A08p17330 Brassica napus HOM05D009862 ORTHO05D021984 4.4e-14 82.0 86 57.0
BolC1t04023H Brassica oleracea HOM05D009862 ORTHO05D021984 4.4e-14 82.0 86 57.0
BraA08t33693Z Brassica rapa HOM05D009862 ORTHO05D021984 4.4e-14 82.0 86 57.0
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 7.4e-14 81.3 89 53.9
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 1.3e-13 80.5 88 53.4
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-13 80.1 88 53.4
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 1.7e-13 80.1 89 52.8
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 2.2e-13 79.7 89 52.8
BolC1t05451H Brassica oleracea HOM05D009862 ORTHO05D021984 2.2e-13 79.7 86 57.0
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 2.2e-13 79.7 89 52.8
BcaC01g03013 Brassica carinata HOM05D003553 ORTHO05D039244 2.8e-13 79.3 93 49.5
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-12 77.4 88 51.1
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 1.1e-12 77.4 89 51.7
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 1.4e-12 77.0 89 50.6
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 1.4e-12 77.0 89 50.6
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 1.4e-12 77.0 89 50.6
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 1.4e-12 77.0 89 50.6
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.4e-12 77.0 88 51.1
AL1G40060 Arabidopsis lyrata HOM05D007004 ORTHO05D009040 3.1e-12 75.9 55 72.7
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 4.1e-12 75.5 88 51.1
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 5.3e-12 75.1 89 50.6
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 7.0e-12 74.7 88 48.9
Aa31LG7G9200 Aethionema arabicum HOM05D007004 ORTHO05D009040 9.1e-12 74.3 55 67.3
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 2.0e-11 73.2 86 50.0
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 3.5e-11 72.4 89 49.4
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 3.5e-11 72.4 89 49.4
THA.LOC104808114 Tarenaya hassleriana HOM05D007004 ORTHO05D009040 3.5e-11 72.4 55 65.5
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.9e-10 69.3 86 47.7
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 1.1e-09 67.4 88 47.7
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 1.1e-09 67.4 86 47.7
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.5e-09 67.0 88 44.3
Duzib132G0688 Durio zibethinus HOM05D007004 ORTHO05D009040 1.9e-09 66.6 73 45.2
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 3.2e-09 65.9 87 46.0
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 4.2e-09 65.5 88 44.3
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 4.2e-09 65.5 88 44.3
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 4.2e-09 65.5 88 44.3
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 4.2e-09 65.5 88 44.3
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 4.2e-09 65.5 88 44.3
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 7.2e-09 64.7 88 44.3
Eucgr.I02721 Eucalyptus grandis HOM05D007004 ORTHO05D009040 7.2e-09 64.7 56 48.2
Gohir.A01G178100 Gossypium hirsutum HOM05D007004 ORTHO05D009040 7.2e-09 64.7 75 42.7
Gohir.D01G168900 Gossypium hirsutum HOM05D007004 ORTHO05D009040 9.4e-09 64.3 73 45.2
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 9.4e-09 64.3 88 44.3
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 9.4e-09 64.3 88 43.2
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 1.2e-08 63.9 95 42.1
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 1.6e-08 63.5 88 44.3
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 1.6e-08 63.5 88 44.3
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 1.6e-08 63.5 88 43.2
Gorai.002G209900 Gossypium raimondii HOM05D007004 ORTHO05D009040 1.6e-08 63.5 73 45.2
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 2.7e-08 62.8 94 42.6
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 3.6e-08 62.4 88 43.2
Manes.10G129800 Manihot esculenta HOM05D007004 ORTHO05D009040 4.7e-08 62.0 52 55.8
Medtr2g081010 Medicago truncatula HOM05D007004 ORTHO05D009040 4.7e-08 62.0 137 29.9
Potri.003G019500 Populus trichocarpa HOM05D007004 ORTHO05D009040 4.7e-08 62.0 90 40.0
BolC1t02585H Brassica oleracea HOM05D000745 ORTHO05D005072 6.1e-08 61.6 71 52.1
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 6.1e-08 61.6 88 43.2
Lj9A306G63 Lonicera japonica HOM05D007004 ORTHO05D009040 8.0e-08 61.2 92 43.5
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-07 60.8 88 43.2
Dinv19362 Davidia involucrata HOM05D007004 ORTHO05D009040 1.0e-07 60.8 68 47.1
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.4e-07 60.5 86 41.9
Atru.chr6.662 Acer truncatum HOM05D007004 ORTHO05D009040 1.8e-07 60.1 50 54.0
CSS0010890 Camellia sinensis var. sinensis HOM05D007004 ORTHO05D009040 1.8e-07 60.1 56 51.8
CSS0040164 Camellia sinensis var. sinensis HOM05D007004 ORTHO05D009040 1.8e-07 60.1 56 51.8
TAR381G0113 Trochodendron aralioides HOM05D007004 ORTHO05D009040 2.3e-07 59.7 42 59.5
Ciclev10001765m.g Citrus clementina HOM05D007004 ORTHO05D009040 3.0e-07 59.3 51 56.9
QL11p000234 Quercus lobata HOM05D007004 ORTHO05D009040 3.0e-07 59.3 46 54.3
CiPaw.06G147800 Carya illinoinensis HOM05D007004 ORTHO05D009040 4.0e-07 58.9 80 42.5
PSO210G5267 Papaver somniferum HOM05D007004 ORTHO05D009040 4.0e-07 58.9 93 37.6
Haze_01664 Corylus avellana HOM05D007004 ORTHO05D009040 5.2e-07 58.5 51 54.9
Migut.B00841 Erythranthe guttata HOM05D007004 ORTHO05D009040 5.2e-07 58.5 96 38.5
Nn5g28203 Nelumbo nucifera HOM05D007004 ORTHO05D009040 6.7e-07 58.2 51 52.9
Glyma.08G185300 Glycine max HOM05D007004 ORTHO05D009040 8.8e-07 57.8 76 43.4
Oeu025684.1 Olea europaea HOM05D007004 ORTHO05D009040 8.8e-07 57.8 45 55.6
PSO170G0041 Papaver somniferum HOM05D007004 ORTHO05D009040 8.8e-07 57.8 74 39.2
arahy.Tifrunner.gnm1.ann1.CRD7SK Arachis hypogaea HOM05D007004 ORTHO05D009040 1.2e-06 57.4 48 52.1
Ca_01804_v3 Cicer arietinum L. HOM05D007004 ORTHO05D009040 1.2e-06 57.4 73 41.1
Ca_30469_v3 Cicer arietinum L. HOM05D007004 ORTHO05D009040 1.2e-06 57.4 73 41.1
Hund12984 Selenicereus undatus HOM05D007004 ORTHO05D009040 1.2e-06 57.4 52 53.8
vmacro19897 Vaccinium macrocarpon HOM05D007004 ORTHO05D009040 1.2e-06 57.4 56 48.2
arahy.Tifrunner.gnm1.ann1.Z970KM Arachis hypogaea HOM05D007004 ORTHO05D009040 1.5e-06 57.0 51 52.9
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 1.5e-06 57.0 88 40.9
ClCG09G014330 Citrullus lanatus HOM05D007004 ORTHO05D009040 1.5e-06 57.0 63 50.8
Cc02_g22440 Coffea canephora HOM05D007004 ORTHO05D009040 2.0e-06 56.6 62 41.9
Gohir.A01G178172 Gossypium hirsutum HOM05D007004 ORTHO05D009040 2.0e-06 56.6 42 52.4
Sabra03G0011000 Salix brachista HOM05D007004 ORTHO05D009040 2.0e-06 56.6 54 55.6
GSVIVG01022970001 Vitis vinifera HOM05D007004 ORTHO05D009040 2.0e-06 56.6 79 39.2
MSTRG.16523 Avicennia marina HOM05D007004 ORTHO05D009040 2.6e-06 56.2 45 57.8
TPR.G32882 Trifolium pratense HOM05D007004 ORTHO05D009040 2.6e-06 56.2 77 41.6
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 3.3e-06 55.8 51 49.0
COL.COLO4_17874 Corchorus olitorius HOM05D007004 ORTHO05D009040 4.4e-06 55.5 55 54.5
Gorai.002G210100 Gossypium raimondii HOM05D007004 ORTHO05D009040 5.7e-06 55.1 45 48.9
Lj4g0009262 Lotus japonicus HOM05D007004 ORTHO05D009040 5.7e-06 55.1 45 53.3
Prupe.1G567600 Prunus persica HOM05D007004 ORTHO05D009040 7.5e-06 54.7 45 53.3


User provided reference genes

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