Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 8.7e-29 129.8 74 100.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-28 129.4 74 98.6
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-28 129.4 74 98.6
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-28 129.4 74 98.6
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-28 129.4 74 98.6
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.1e-28 129.4 74 98.6
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 4.0e-26 120.9 73 83.6
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 9.0e-26 119.8 73 83.6
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 3.4e-25 117.9 74 93.2
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 9.9e-25 116.3 73 93.2
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 5.1e-21 104.0 76 82.9
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 8.7e-21 103.2 75 81.3
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.6e-19 99.0 79 63.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-19 98.6 74 78.4
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 6.2e-19 97.1 75 65.3
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 6.2e-19 97.1 75 76.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 8.1e-19 96.7 78 71.8
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.8e-18 95.5 78 74.4
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-18 95.5 63 71.4
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-18 95.5 75 65.3
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-18 95.5 63 71.4
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-18 95.5 63 71.4
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-18 95.5 63 71.4
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-18 95.5 63 71.4
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.8e-18 95.5 63 71.4
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.8e-18 95.5 63 71.4
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.4e-18 95.1 66 71.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.4e-18 95.1 66 71.2
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.4e-18 95.1 71 62.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.2e-17 92.8 66 69.7
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.5e-17 92.4 76 63.2
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.5e-17 92.4 75 62.7
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-17 91.3 63 66.7
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.4e-17 91.3 49 83.7
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 5.8e-17 90.5 75 61.3
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.8e-17 90.5 49 81.6
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 9.9e-17 89.7 84 67.9
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.3e-16 89.4 78 62.8
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.8e-16 87.8 76 65.8
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 6.4e-16 87.0 49 79.6
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 8.4e-16 86.7 75 58.7
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.4e-15 85.9 74 56.8
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-15 85.9 74 56.8
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.2e-15 84.7 74 56.8
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.2e-15 84.3 49 73.5
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.2e-15 84.3 75 54.7
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.4e-15 84.0 74 55.4
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.2e-14 82.8 74 54.1
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.6e-14 82.4 74 63.5
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.6e-14 82.4 73 63.0
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.6e-14 82.4 74 60.8
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.1e-14 82.0 74 54.1
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.7e-14 81.6 76 55.3
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.7e-14 81.6 75 54.7
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.7e-14 81.6 75 52.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.5e-14 81.3 74 52.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.5e-14 81.3 74 52.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.5e-14 81.3 74 52.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.5e-14 81.3 77 55.8
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 3.5e-14 81.3 74 54.1
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 4.6e-14 80.9 74 52.7
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 6.0e-14 80.5 61 60.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 7.9e-14 80.1 74 52.7
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 7.9e-14 80.1 46 67.4
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 7.9e-14 80.1 80 50.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.0e-13 79.7 75 56.0
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.0e-13 79.7 74 52.7
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.3e-13 79.3 75 54.7
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 1.3e-13 79.3 74 52.7
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.3e-13 79.3 77 53.2
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.8e-13 79.0 75 56.0
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.8e-13 79.0 75 53.3
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.8e-13 79.0 74 54.1
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 2.3e-13 78.6 75 56.0
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.3e-13 78.6 75 52.0
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 75 53.3
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 2.3e-13 78.6 75 56.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 3.0e-13 78.2 76 56.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.0e-13 78.2 68 51.5
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 3.0e-13 78.2 75 54.7
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.9e-13 77.8 47 70.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 3.9e-13 77.8 73 52.1
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 6.7e-13 77.0 75 53.3
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 6.7e-13 77.0 75 53.3
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 8.7e-13 76.6 75 54.7
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 8.7e-13 76.6 75 50.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-12 76.3 74 50.0
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 54.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 50.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.1e-12 76.3 74 50.0
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-12 75.5 62 59.7
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.5e-12 75.1 75 53.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 3.3e-12 74.7 75 50.7
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.3e-12 74.7 79 51.9
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.3e-12 74.7 79 51.9
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.3e-12 74.7 75 53.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.3e-12 74.3 81 48.1
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 5.6e-12 73.9 81 55.6
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 9.6e-12 73.2 47 63.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 9.6e-12 73.2 79 50.6
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.3e-11 72.8 71 56.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 54.1
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.3e-11 72.8 75 52.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.1e-11 72.0 62 58.1
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.1e-11 72.0 44 70.5
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.1e-11 72.0 68 48.5
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 2.1e-11 72.0 68 51.5
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.1e-11 72.0 70 51.4
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 2.8e-11 71.6 75 52.0
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.8e-11 71.6 75 52.0
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.8e-11 70.9 44 65.9
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.8e-11 70.9 82 47.6
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 6.2e-11 70.5 76 52.6
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 8.1e-11 70.1 78 44.9
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 8.1e-11 70.1 47 66.0
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.1e-10 69.7 62 56.5
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.1e-10 69.7 44 63.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.4e-10 69.3 73 47.9
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.4e-10 69.3 44 70.5
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 70.5
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 70.5
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.4e-10 68.6 47 63.8
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.4e-10 68.6 44 68.2
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.4e-10 68.6 44 68.2
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 3.1e-10 68.2 44 68.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 3.1e-10 68.2 82 57.3
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.1e-10 68.2 44 68.2
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.1e-10 68.2 44 68.2
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 3.1e-10 68.2 44 68.2
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 4.0e-10 67.8 62 53.2
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 5.3e-10 67.4 44 65.9
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 9.0e-10 66.6 80 42.5
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 9.0e-10 66.6 48 62.5
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 9.0e-10 66.6 46 58.7
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.2e-09 66.2 63 52.4
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.5e-09 65.9 67 50.7
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.5e-09 65.9 44 65.9
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.5e-09 64.3 46 54.3
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 5.8e-09 63.9 45 53.3
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 5.8e-09 63.9 75 46.7
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 7.6e-09 63.5 44 59.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.7e-08 62.4 44 56.8
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 3.8e-08 61.2 64 45.3
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.8e-08 61.2 57 49.1
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.9e-08 60.8 72 45.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 6.5e-08 60.5 42 54.8
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-07 59.3 62 46.8
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 9.3e-07 56.6 67 47.8
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 3.5e-06 54.7 57 49.1


User provided reference genes

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