Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-113 413.3 210 100.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.1e-113 413.3 210 100.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.5e-113 412.1 210 99.5
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.5e-113 412.1 210 99.5
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 6.1e-112 407.5 210 98.1
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 3.3e-110 401.7 210 98.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 3.3e-110 401.7 210 98.1
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-108 396.7 210 96.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.1e-108 396.7 210 96.7
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.2e-104 383.3 210 95.2
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 8.0e-104 380.6 196 98.0
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 5.2e-103 377.9 212 91.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.7e-101 372.9 214 90.2
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 4.8e-101 371.3 214 90.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 5.4e-100 367.9 208 90.9
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.5e-99 364.8 213 88.3
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.1e-97 360.1 216 88.0
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 9.5e-97 357.1 212 87.7
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 5.2e-95 351.3 216 87.5
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.5e-89 330.5 211 80.1
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.5e-81 306.6 212 75.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 5.6e-81 304.7 212 74.5
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.7e-80 301.6 212 74.5
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.0e-74 282.3 201 72.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.1e-73 280.4 212 68.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.5e-73 280.0 210 71.0
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.5e-73 279.3 203 73.4
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.5e-73 279.3 209 69.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.3e-73 277.7 209 69.4
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.4e-71 273.5 203 70.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.5e-70 270.0 204 68.6
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.0e-70 269.6 209 69.9
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.8e-70 268.1 206 70.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.7e-69 266.5 204 68.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.2e-69 266.2 204 66.7
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.1e-68 263.8 196 70.9
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.9e-68 263.1 194 71.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.9e-68 263.1 205 69.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.4e-68 262.7 205 68.8
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.1e-68 261.9 204 71.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 7.1e-68 261.2 197 72.1
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.6e-67 260.0 197 69.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.5e-67 258.8 211 65.4
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.3e-66 256.9 263 55.5
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.3e-66 256.1 216 65.3
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.3e-66 256.1 181 74.0
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 3.0e-66 255.8 201 70.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 3.9e-66 255.4 190 70.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 3.9e-66 255.4 205 68.3
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 5.1e-66 255.0 218 64.2
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.1e-65 253.8 205 68.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.1e-65 253.8 205 68.3
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.9e-65 253.1 193 68.4
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.5e-65 252.7 209 67.5
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.5e-65 252.7 200 67.5
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.3e-65 252.3 210 67.1
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 5.6e-65 251.5 196 68.4
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.6e-65 251.5 155 81.9
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 5.6e-65 251.5 209 67.9
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 7.3e-65 251.1 184 69.6
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 7.3e-65 251.1 196 71.4
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-64 250.4 213 65.3
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.6e-64 250.0 209 68.4
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.6e-64 250.0 152 82.2
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.6e-64 250.0 150 82.0
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.1e-64 249.6 203 67.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.1e-64 249.6 203 65.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.8e-64 249.2 214 65.4
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.6e-64 248.8 153 81.0
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 4.7e-64 248.4 189 68.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.7e-64 248.4 206 68.4
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.7e-64 248.4 196 68.9
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 6.2e-64 248.1 181 72.9
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 6.2e-64 248.1 205 63.9
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 8.1e-64 247.7 201 65.2
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.8e-63 246.5 200 65.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-63 245.7 196 68.9
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-63 245.7 196 68.9
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.1e-63 245.7 213 66.7
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 4.0e-63 245.4 149 81.9
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 5.2e-63 245.0 151 78.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-62 243.8 196 68.4
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 3.4e-62 242.3 208 66.8
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-62 242.3 208 66.8
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.4e-62 242.3 208 66.8
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.8e-62 241.5 208 66.8
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.6e-62 241.1 208 66.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-61 240.0 208 66.3
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.9e-61 239.2 202 64.9
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.1e-60 237.3 150 76.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.4e-60 236.9 210 62.4
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.4e-60 236.9 210 64.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.9e-60 236.5 202 62.9
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.4e-60 236.1 154 76.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.2e-60 235.3 196 66.8
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.1e-59 233.0 201 64.2
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 6.0e-59 231.5 152 77.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.7e-58 229.9 189 68.3
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.3e-58 229.6 150 76.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.3e-57 225.7 217 60.8
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.3e-57 225.3 195 63.1
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 7.3e-57 224.6 180 65.6
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.3e-56 223.8 200 60.0
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.6e-56 223.4 161 70.8
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 4.8e-56 221.9 199 60.3
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 6.2e-56 221.5 194 60.8
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.6e-54 216.1 144 76.4
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 4.4e-54 215.3 193 61.7
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 9.9e-54 214.2 120 85.8
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.4e-52 209.5 154 71.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 7.1e-52 208.0 148 71.6
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 9.3e-52 207.6 281 47.0
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 2.7e-51 206.1 211 56.9
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.7e-51 206.1 209 58.4
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.0e-50 204.1 186 58.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.7e-50 203.4 185 58.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 9.6e-49 197.6 146 68.5
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 9.6e-49 197.6 158 63.9
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 9.6e-49 197.6 156 64.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 5.3e-47 191.8 204 53.4
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 7.6e-46 188.0 101 91.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.7e-45 186.8 198 52.5
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.7e-45 186.8 198 52.5
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.2e-44 182.6 136 68.4
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.5e-43 179.1 160 60.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 3.5e-43 179.1 120 73.3
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.3e-42 177.2 153 65.4
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.7e-37 160.2 212 48.1
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.8e-37 159.1 93 80.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.7e-35 152.9 151 52.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.0e-34 151.0 206 43.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.3e-34 149.8 149 53.0
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.1e-34 148.7 137 54.7
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.3e-33 146.0 112 58.9
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 5.7e-33 145.2 80 87.5
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.7e-32 142.5 106 61.3
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 3.8e-29 132.5 114 56.1
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.8e-26 123.6 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.5e-25 119.8 80 73.8
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.5e-22 109.0 125 54.4
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.4e-18 97.4 127 47.2
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.5e-14 84.0 109 43.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.6e-14 83.2 50 78.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 5.0e-13 79.0 116 40.5
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.4e-07 60.1 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.5e-06 57.4 63 54.0


User provided reference genes

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