Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 4.0e-81 304.7 151 100.0
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 2.9e-55 218.8 112 98.2
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 4.9e-55 218.0 112 98.2
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 5.5e-54 214.5 114 96.5
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 5.5e-54 214.5 114 96.5
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 8.7e-52 207.2 112 92.9
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 6.3e-42 174.5 118 79.7
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 1.2e-40 170.2 119 78.2
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 1.2e-40 170.2 116 77.6
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 7.6e-40 167.5 115 77.4
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 3.2e-38 162.2 118 77.1
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 1.2e-37 160.2 130 72.3
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 1.2e-37 160.2 130 72.3
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 2.3e-36 156.0 120 73.3
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 2.8e-34 149.1 119 69.7
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 1.4e-33 146.7 118 67.8
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 1.3e-31 140.2 119 66.4
A09p14720 Brassica napus HOM05D010600 ORTHO05D007875 9.4e-30 134.0 128 60.9
BraA09t37118Z Brassica rapa HOM05D010600 ORTHO05D007875 1.3e-26 123.6 119 60.5
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 2.5e-22 109.4 112 58.0
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.7e-13 79.3 110 47.3
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.4e-12 77.0 110 46.4
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 1.2e-11 73.9 119 42.0
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 1.2e-11 73.9 115 40.0
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 2.0e-11 73.2 115 40.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.3e-11 72.4 112 42.9
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 4.4e-11 72.0 119 42.0
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 1.3e-10 70.5 118 36.4
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.2e-10 69.7 113 39.8
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 6.3e-10 68.2 117 37.6
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 1.1e-09 67.4 116 37.9
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.8e-09 66.6 115 40.9
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 3.1e-09 65.9 112 39.3
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.1e-09 65.9 109 36.7
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 7.0e-09 64.7 112 39.3
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 9.1e-09 64.3 115 39.1
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 1.6e-08 63.5 112 40.2
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 2.0e-08 63.2 112 40.2
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 3.5e-08 62.4 112 38.4
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.9e-08 61.6 121 36.4
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.0e-07 60.8 119 37.0
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.0e-07 60.8 110 39.1
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 1.3e-07 60.5 122 36.1
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 1.3e-07 60.5 109 39.4
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 1.7e-07 60.1 110 38.2
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 2.2e-07 59.7 104 41.3
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 2.9e-07 59.3 115 36.5
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 3.8e-07 58.9 116 33.6
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 3.8e-07 58.9 110 37.3
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 5.0e-07 58.5 126 37.3
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 5.0e-07 58.5 121 33.1
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 5.0e-07 58.5 121 37.2
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 6.5e-07 58.2 116 38.8
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 8.5e-07 57.8 113 35.4
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 8.5e-07 57.8 116 33.6
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 8.5e-07 57.8 113 38.1
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.1e-06 57.4 113 37.2
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.1e-06 57.4 115 34.8
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.1e-06 57.4 113 34.5
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 1.9e-06 56.6 117 34.2
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.9e-06 56.6 113 36.3
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 1.9e-06 56.6 123 34.1
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 2.5e-06 56.2 112 40.2
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 3.2e-06 55.8 109 31.2
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 3.2e-06 55.8 113 35.4
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 4.2e-06 55.5 105 35.2
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.2e-06 55.5 114 37.7
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 7.2e-06 54.7 108 34.3
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 7.2e-06 54.7 108 34.3
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 7.2e-06 54.7 114 30.7
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 9.4e-06 54.3 108 35.2
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 9.4e-06 54.3 101 43.6


User provided reference genes

Program Settings