Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 3.1e-166 588.6 333 100.0
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 3.1e-166 588.6 333 100.0
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 2.4e-163 578.9 333 98.5
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 3.0e-153 545.4 336 89.9
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 1.2e-149 533.5 336 89.0
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 1.1e-128 463.8 339 80.8
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 2.6e-96 356.3 350 64.6
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 7.0e-94 348.2 347 64.6
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 1.2e-90 337.4 352 64.2
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 2.7e-90 336.3 353 62.6
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 1.2e-88 330.9 357 60.8
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 2.0e-85 320.1 341 61.3
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 1.3e-60 237.7 328 49.4
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 8.9e-49 198.4 346 46.5
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 1.6e-42 177.6 236 47.9
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 2.1e-42 177.2 244 48.0
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 3.6e-42 176.4 238 44.1
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 4.0e-41 172.9 236 50.4
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 8.9e-41 171.8 243 47.3
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 1.2e-40 171.4 299 39.5
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 2.0e-40 170.6 272 44.5
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 5.8e-40 169.1 322 41.6
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 2.9e-39 166.8 237 48.9
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.9e-38 164.1 236 45.8
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 1.6e-37 161.0 235 47.7
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 2.1e-37 160.6 233 42.5
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 2.1e-37 160.6 243 47.7
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 3.5e-37 159.8 374 35.0
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 6.0e-37 159.1 241 44.4
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.3e-36 157.9 237 44.7
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.7e-36 157.5 234 44.0
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.9e-36 156.4 235 44.7
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 5.1e-36 156.0 236 44.5
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 6.6e-36 155.6 235 45.1
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.1e-35 154.8 235 44.7
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.1e-35 154.8 238 45.8
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 1.1e-35 154.8 238 45.0
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 2.5e-35 153.7 308 39.0
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 3.3e-35 153.3 237 44.3
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 3.3e-35 153.3 235 44.3
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.3e-35 153.3 235 44.3
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 3.3e-35 153.3 236 41.9
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 4.3e-35 152.9 240 44.6
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 4.3e-35 152.9 244 45.1
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 5.6e-35 152.5 235 44.3
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 5.6e-35 152.5 241 44.8
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 7.3e-35 152.1 241 44.8
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 2.4e-33 147.1 236 44.1
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 2.6e-32 143.7 237 42.2
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 2.9e-31 140.2 242 43.0
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 2.9e-31 140.2 220 40.5
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 6.4e-31 139.0 237 41.8
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 6.4e-31 139.0 234 44.9
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 8.4e-31 138.7 238 45.0
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 3.2e-30 136.7 235 40.4
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 5.4e-30 136.0 257 40.9
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.2e-29 134.8 241 42.7
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 1.2e-29 134.8 235 39.1
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 1.2e-29 134.8 235 40.9
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 2.7e-29 133.7 321 37.4
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 6.0e-29 132.5 354 36.2
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.0e-28 131.7 231 41.1
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.3e-28 131.3 235 37.9
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.7e-28 131.0 235 39.1
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.9e-27 127.5 231 39.4
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 3.3e-27 126.7 232 39.2
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 9.6e-27 125.2 231 39.0
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 9.6e-27 125.2 351 35.6
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 1.4e-25 121.3 237 39.2
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 1.8e-25 120.9 315 36.8
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 1.5e-24 117.9 242 38.8
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 5.8e-24 115.9 241 38.6
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 7.6e-24 115.5 212 41.5
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 3.8e-23 113.2 241 36.9
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 1.4e-22 111.3 169 46.2
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 5.4e-22 109.4 252 34.1
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 9.3e-22 108.6 238 37.4
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 2.1e-21 107.5 233 38.6
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 3.5e-21 106.7 234 33.3
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.8e-20 104.4 238 39.5
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 3.0e-20 103.6 269 32.3
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 1.1e-19 101.7 358 30.7
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 1.3e-18 98.2 208 41.3
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 2.4e-17 94.0 92 54.3
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 1.2e-16 91.7 237 34.6
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 1.7e-15 87.8 235 34.9
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.2e-14 83.6 70 55.7
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 7.9e-13 79.0 195 36.4
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 6.7e-12 75.9 171 41.5
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.7e-07 61.2 104 38.5
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 3.2e-06 57.0 97 44.3


User provided reference genes

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