Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p16490 Brassica napus HOM05D008820 ORTHO05D011139 0.0e+00 1328.2 693 100.0
BolC9t54559H Brassica oleracea HOM05D008820 ORTHO05D011139 0.0e+00 1313.1 699 98.6
BcaC04g22692 Brassica carinata HOM05D008820 ORTHO05D011139 0.0e+00 1223.0 641 100.0
BraA09t37032Z Brassica rapa HOM05D008820 ORTHO05D011139 0.0e+00 1214.9 723 88.8
A09p13800 Brassica napus HOM05D008820 ORTHO05D011139 0.0e+00 1117.8 665 88.9
Sp2g00990 Schrenkiella parvula HOM05D008820 ORTHO05D011139 7.5e-284 980.3 680 79.0
BcaB07g31557 Brassica carinata HOM05D008820 ORTHO05D011139 1.7e-280 969.1 655 80.5
Thhalv10023318m.g Eutrema salsugineum HOM05D008820 ORTHO05D011139 2.2e-267 925.6 685 74.3
AL2G11560 Arabidopsis lyrata HOM05D008820 ORTHO05D011139 8.4e-267 923.7 685 75.5
AT1G63670 Arabidopsis thaliana HOM05D008820 ORTHO05D011139 2.5e-263 912.1 682 73.8
Carub.0002s0118 Capsella rubella HOM05D008820 ORTHO05D011139 3.4e-260 901.7 680 72.4
CARHR047670 Cardamine hirsuta HOM05D008820 ORTHO05D011139 6.4e-251 870.9 678 71.8
C09p18650 Brassica napus HOM05D008820 ORTHO05D011139 1.3e-235 820.1 663 70.7
BolC9t54760H Brassica oleracea HOM05D008820 ORTHO05D011139 3.0e-232 808.9 665 70.2
A09p15380 Brassica napus HOM05D008820 ORTHO05D011139 3.1e-229 798.9 663 69.4
BraA09t37180Z Brassica rapa HOM05D008820 ORTHO05D011139 6.9e-229 797.7 663 69.2
BcaNung06083 Brassica carinata HOM05D008820 ORTHO05D011139 1.7e-227 793.1 656 69.8
Aa31LG2G880 Aethionema arabicum HOM05D008820 ORTHO05D011139 3.2e-202 709.1 687 59.1
THA.LOC104817974 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 5.6e-130 469.2 778 44.3
THA.LOC104823587 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 2.0e-127 460.7 741 44.8
C01p12760 Brassica napus HOM05D008820 ORTHO05D011139 8.1e-52 209.5 140 72.1
BolC3t20944H Brassica oleracea HOM05D008820 ORTHO05D011139 8.1e-52 209.5 140 72.1
BolC3t16052H Brassica oleracea HOM05D008820 ORTHO05D011139 8.9e-51 206.1 140 71.4
C02p20010 Brassica napus HOM05D008820 ORTHO05D011139 4.4e-50 203.8 145 69.0
C07p02790 Brassica napus HOM05D008820 ORTHO05D011139 1.3e-49 202.2 197 63.5
BcaB05g22617 Brassica carinata HOM05D008820 ORTHO05D011139 4.2e-32 144.1 141 62.4
COL.COLO4_34473 Corchorus olitorius HOM05D002082 ORTHO05D002130 3.5e-31 141.0 846 24.5
Gohir.A08G183050 Gossypium hirsutum HOM05D002082 ORTHO05D011139 1.8e-27 128.6 675 24.6
Cpa.g.sc74.55 Carica papaya HOM05D002082 ORTHO05D002130 6.9e-27 126.7 361 31.3
Gorai.004G212500 Gossypium raimondii HOM05D002082 ORTHO05D011139 3.8e-25 120.9 673 24.2
Thecc.03G279700 Theobroma cacao HOM05D002082 ORTHO05D002130 1.4e-24 119.0 931 22.8
Gohir.D08G201600 Gossypium hirsutum HOM05D002082 ORTHO05D011139 5.4e-24 117.1 675 24.4
FAN04G2070 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.7e-22 112.1 856 24.4
A07p03780 Brassica napus HOM05D008820 ORTHO05D011139 2.3e-22 111.7 128 58.6
BraA07t28170Z Brassica rapa HOM05D008820 ORTHO05D011139 2.3e-22 111.7 128 58.6
BraA07t28172Z Brassica rapa HOM05D008820 ORTHO05D011139 2.3e-22 111.7 128 58.6
FAN08G0625 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.0e-22 111.3 893 23.9
FAN13G1469 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.5e-21 109.0 857 24.2
FvH4_5g02600 Fragaria vesca HOM05D002082 ORTHO05D002130 1.3e-20 105.9 841 23.9
BraA07t28167Z Brassica rapa HOM05D008820 ORTHO05D011139 1.6e-20 105.5 128 57.0
FAN18G2062 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.8e-20 104.8 851 22.9
BolC1t01424H Brassica oleracea HOM05D008820 ORTHO05D011139 4.0e-19 100.9 117 52.1
Duzib084G0248 Durio zibethinus HOM05D002082 ORTHO05D002130 9.9e-18 96.3 284 30.6
RcHm_v2.0_Chr7g0197501 Rosa chinensis HOM05D002082 ORTHO05D002130 9.9e-18 96.3 200 30.0
Atru.chr9.2180 Acer truncatum HOM05D002082 ORTHO05D002130 1.1e-16 92.8 379 27.2
Manes.01G059400 Manihot esculenta HOM05D002082 ORTHO05D002130 4.2e-16 90.9 859 21.7
Duzib205G1702 Durio zibethinus HOM05D002082 ORTHO05D002130 9.3e-16 89.7 294 28.6
MD14G1105800 Malus domestica HOM05D002082 ORTHO05D002130 7.9e-15 86.7 162 32.7
Gorai.008G247100 Gossypium raimondii HOM05D002082 ORTHO05D002130 1.8e-14 85.5 272 30.5
Potri.001G103400 Populus trichocarpa HOM05D002082 ORTHO05D002130 1.8e-14 85.5 271 29.9
Gohir.D12G230900 Gossypium hirsutum HOM05D002082 ORTHO05D002130 6.7e-14 83.6 272 30.1
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.1e-13 82.8 181 32.0
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 4.3e-13 80.9 264 28.8
Duzib068G0569 Durio zibethinus HOM05D002082 ORTHO05D002130 5.6e-13 80.5 295 28.1
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 7.4e-13 80.1 185 30.3
Cfa012223 Carpinus fangiana HOM05D002082 ORTHO05D002130 9.6e-13 79.7 159 32.1
GSVIVG01026934001 Vitis vinifera HOM05D002082 ORTHO05D002130 9.6e-13 79.7 317 29.3
Actinidia33419 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.6e-12 79.0 242 29.8
Actinidia33420 Actinidia chinensis HOM05D002082 ORTHO05D002130 2.1e-12 78.6 264 26.5
Eucgr.E00627 Eucalyptus grandis HOM05D002082 ORTHO05D002130 2.1e-12 78.6 179 30.2
Sabra01G0078100 Salix brachista HOM05D002082 ORTHO05D002130 2.1e-12 78.6 332 28.3
Manes.02G019700 Manihot esculenta HOM05D002082 ORTHO05D002130 1.1e-11 76.3 265 29.4
CSS0003251 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 2.4e-11 75.1 255 27.5
Prupe.5G101000 Prunus persica HOM05D002082 ORTHO05D002130 4.0e-11 74.3 255 29.8
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 5.3e-11 73.9 163 30.1
QL12p032830 Quercus lobata HOM05D002082 ORTHO05D002130 9.0e-11 73.2 159 28.9
Gohir.A12G229800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.2e-10 72.8 345 25.2
HanXRQChr16g0522751 Helianthus annuus HOM05D002082 ORTHO05D002130 1.2e-10 72.8 254 28.7
Haze_08787 Corylus avellana HOM05D002082 ORTHO05D002130 1.5e-10 72.4 145 32.4
MD06G1085000 Malus domestica HOM05D002082 ORTHO05D002130 1.5e-10 72.4 259 29.3
CiPaw.01G061400 Carya illinoinensis HOM05D002082 ORTHO05D002130 2.0e-10 72.0 163 29.4
PGR031G0369 Punica granatum HOM05D002082 ORTHO05D002130 3.4e-10 71.2 155 29.0
Hund16922 Selenicereus undatus HOM05D002082 ORTHO05D002130 3.4e-10 71.2 324 26.9
SGA_v2.0_scaffold479G52240 Striga asiatica HOM05D002082 ORTHO05D002130 3.4e-10 71.2 160 30.0
Eucgr.E00135 Eucalyptus grandis HOM05D002082 ORTHO05D002130 5.8e-10 70.5 173 29.5
Sabra02G0127000 Salix brachista HOM05D002082 ORTHO05D002130 1.0e-09 69.7 290 25.5
Dinv32485 Davidia involucrata HOM05D002082 ORTHO05D002130 1.3e-09 69.3 264 28.8
Dinv43817 Davidia involucrata HOM05D002082 ORTHO05D002130 1.3e-09 69.3 297 27.3
QL08p048793 Quercus lobata HOM05D002082 ORTHO05D002130 1.7e-09 68.9 157 30.6
Dinv37634 Davidia involucrata HOM05D002082 ORTHO05D002130 3.8e-09 67.8 164 28.0
BraA06t24331Z Brassica rapa HOM05D008820 ORTHO05D011139 6.5e-09 67.0 40 77.5
ClCG01G002640 Citrullus lanatus HOM05D002082 ORTHO05D002130 6.5e-09 67.0 153 27.5
Actinidia12703 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.1e-08 66.2 252 26.6
CiPaw.02G031000 Carya illinoinensis HOM05D002082 ORTHO05D002130 1.1e-08 66.2 177 27.1
DCAR_004631 Daucus carota HOM05D002082 ORTHO05D002130 1.1e-08 66.2 524 22.5
DCAR_006930 Daucus carota HOM05D002082 ORTHO05D002130 1.1e-08 66.2 216 26.9
Glyma.07G070500 Glycine max HOM05D002082 ORTHO05D002130 1.1e-08 66.2 273 26.4
PGR042G2129 Punica granatum HOM05D002082 ORTHO05D002130 1.1e-08 66.2 245 26.9
TAR636G0944 Trochodendron aralioides HOM05D002082 ORTHO05D002130 1.1e-08 66.2 349 27.2
ATR0680G229 Amborella trichopoda HOM05D002082 ORTHO05D002130 1.4e-08 65.9 239 29.7
CANSAT56G4299 Cannabis sativa HOM05D002082 ORTHO05D002130 1.4e-08 65.9 306 29.7
Ciclev10018878m.g Citrus clementina HOM05D002082 ORTHO05D002130 1.9e-08 65.5 74 50.0
Glyma.03G009000 Glycine max HOM05D002082 ORTHO05D002130 1.9e-08 65.5 274 26.3
Lj7A512T28 Lonicera japonica HOM05D002082 ORTHO05D002130 2.5e-08 65.1 815 21.7
Medtr8g098335 Medicago truncatula HOM05D002082 ORTHO05D002130 2.5e-08 65.1 548 22.3
Potri.002G160000 Populus trichocarpa HOM05D002082 ORTHO05D002130 2.5e-08 65.1 164 28.0
Thecc.04G199500 Theobroma cacao HOM05D002082 ORTHO05D002130 3.2e-08 64.7 156 29.5
Dinv43818 Davidia involucrata HOM05D002082 ORTHO05D002130 5.5e-08 63.9 285 26.7
Manes.01G256600 Manihot esculenta HOM05D002082 ORTHO05D002130 5.5e-08 63.9 244 27.5
Potri.014G084600 Populus trichocarpa HOM05D002082 ORTHO05D002130 5.5e-08 63.9 261 26.8
PSO782G2744 Papaver somniferum HOM05D002082 ORTHO05D002130 7.1e-08 63.5 241 29.0
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 1.2e-07 62.8 311 26.4
COL.COLO4_20185 Corchorus olitorius HOM05D002082 ORTHO05D002130 1.6e-07 62.4 155 29.7
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 1.6e-07 62.4 240 29.2
Aqoxy7G00305 Aquilegia oxysepala HOM05D002082 ORTHO05D002130 2.1e-07 62.0 155 27.1
arahy.Tifrunner.gnm1.ann1.Q9SV2L Arachis hypogaea HOM05D002082 ORTHO05D002130 2.1e-07 62.0 199 27.6
C03p60290 Brassica napus HOM05D008820 ORTHO05D021986 2.1e-07 62.0 36 80.6
BolC3t18291H Brassica oleracea HOM05D008820 ORTHO05D021986 2.1e-07 62.0 36 80.6
HanXRQChr13g0394501 Helianthus annuus HOM05D002082 ORTHO05D002130 2.1e-07 62.0 268 23.9
Cfa003924 Carpinus fangiana HOM05D002082 ORTHO05D002130 2.7e-07 61.6 162 29.6
HanXRQChr04g0121091 Helianthus annuus HOM05D002082 ORTHO05D002130 2.7e-07 61.6 735 22.9
Medtr7g077740 Medicago truncatula HOM05D002082 ORTHO05D002130 3.5e-07 61.2 326 23.6
Lj9A583T65 Lonicera japonica HOM05D002082 ORTHO05D002130 4.6e-07 60.8 157 28.7
Nitab4.5_0006762g0010 Nicotiana tabacum HOM05D002082 ORTHO05D002130 4.6e-07 60.8 194 26.3
MSTRG.11980 Avicennia marina HOM05D002082 ORTHO05D002130 6.0e-07 60.5 159 30.8
Migut.A00735 Erythranthe guttata HOM05D002082 ORTHO05D002130 6.0e-07 60.5 244 26.6
FvH4_7g14290 Fragaria vesca HOM05D002082 ORTHO05D002130 6.0e-07 60.5 159 32.1
Manes.05G034100 Manihot esculenta HOM05D002082 ORTHO05D002130 6.0e-07 60.5 250 27.6
CANSAT21G1957 Cannabis sativa HOM05D002082 ORTHO05D002130 7.9e-07 60.1 461 25.8
MD01G1060800 Malus domestica HOM05D002082 ORTHO05D002130 1.0e-06 59.7 252 27.8
FAN03G3385 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.3e-06 59.3 159 28.9
Glyma.08G015100 Glycine max HOM05D002082 ORTHO05D002130 1.3e-06 59.3 218 27.1
Lsat_1_v5_gn_7_4721 Lactuca sativa HOM05D002082 ORTHO05D002130 1.3e-06 59.3 181 30.9
Phvul.008G062300 Phaseolus vulgaris HOM05D002082 ORTHO05D002130 1.3e-06 59.3 270 25.9
ClCG05G001520 Citrullus lanatus HOM05D002082 ORTHO05D002130 1.8e-06 58.9 306 23.5
FAN06G2330 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.8e-06 58.9 159 31.4
Phvul.010G099200 Phaseolus vulgaris HOM05D002082 ORTHO05D002130 1.8e-06 58.9 269 23.8
Sopen08g029460 Solanum pennellii HOM05D002082 ORTHO05D002130 1.8e-06 58.9 217 23.5
CANSAT56G1625 Cannabis sativa HOM05D002082 ORTHO05D002130 2.3e-06 58.5 304 24.0
Cpa.g.sc11.5 Carica papaya HOM05D002082 ORTHO05D002130 2.3e-06 58.5 297 23.2
FAN10G2557 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.3e-06 58.5 159 28.9
FAN10G2676 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.3e-06 58.5 159 28.9
HanXRQChr10g0280321 Helianthus annuus HOM05D002769 ORTHO05D003160 2.3e-06 58.5 249 24.9
Nitab4.5_0000583g0100 Nicotiana tabacum HOM05D002082 ORTHO05D002130 2.3e-06 58.5 194 25.8
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 2.3e-06 58.5 169 29.6
arahy.Tifrunner.gnm1.ann1.H5386A Arachis hypogaea HOM05D002082 ORTHO05D002130 3.0e-06 58.2 251 24.7
AUR62004359 Chenopodium quinoa HOM05D002082 ORTHO05D002130 3.0e-06 58.2 384 23.4
Ciclev10018716m.g Citrus clementina HOM05D002082 ORTHO05D002130 3.0e-06 58.2 218 23.9
FAN06G4139 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.0e-06 58.2 159 31.4
Glyma.18G233100 Glycine max HOM05D002082 ORTHO05D002130 3.0e-06 58.2 272 25.7
Solyc08g081160.3 Solanum lycopersicum HOM05D002082 ORTHO05D002130 3.0e-06 58.2 208 23.6
SGA_v2.0_scaffold173G39174 Striga asiatica HOM05D002082 ORTHO05D002130 3.0e-06 58.2 165 29.1
vmacro20942 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 3.0e-06 58.2 308 25.3
HanXRQChr02g0034491 Helianthus annuus HOM05D002082 ORTHO05D002130 3.9e-06 57.8 175 25.1
TPR.G37805 Trifolium pratense HOM05D002082 ORTHO05D002130 3.9e-06 57.8 268 24.6
A06p08450 Brassica napus HOM05D008820 ORTHO05D021986 5.1e-06 57.4 36 75.0
BraA06t24041Z Brassica rapa HOM05D008820 ORTHO05D021986 5.1e-06 57.4 36 75.0
Psat4g155680 Pisum sativum HOM05D002082 ORTHO05D002130 5.1e-06 57.4 301 24.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 5.1e-06 57.4 630 20.8
Lalb_Chr04g0256961 Lupinus albus HOM05D002082 ORTHO05D002130 6.7e-06 57.0 278 23.4
Gohir.A09G205900 Gossypium hirsutum HOM05D002082 ORTHO05D002130 8.7e-06 56.6 169 29.0
Nitab4.5_0001615g0070 Nicotiana tabacum HOM05D002082 ORTHO05D002130 8.7e-06 56.6 164 25.0


User provided reference genes

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