Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 7.8e-106 387.1 191 100.0
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 6.6e-105 384.0 191 99.5
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.2e-103 379.8 191 98.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 4.7e-103 377.9 191 97.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 6.2e-103 377.5 191 97.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 7.0e-99 364.0 191 93.7
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.7e-97 359.4 191 92.7
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.3e-97 359.0 191 92.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 4.3e-96 354.8 191 89.0
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.4e-93 344.7 191 86.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.7e-92 342.8 193 86.5
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 2.4e-91 339.0 189 85.2
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 9.9e-85 317.0 191 80.1
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.8e-82 307.4 186 76.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.9e-81 305.1 186 76.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 7.3e-80 300.8 186 76.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.6e-79 298.5 186 76.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.7e-79 298.1 186 75.3
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 8.9e-78 293.9 186 73.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 8.9e-78 293.9 179 78.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 8.9e-78 293.9 175 78.9
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-77 293.5 190 71.6
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.5e-77 293.1 190 75.8
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.0e-77 292.7 189 73.0
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 2.6e-77 292.4 186 76.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 3.4e-77 292.0 174 77.6
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.4e-77 291.6 186 72.6
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 5.8e-77 291.2 186 75.8
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 9.9e-77 290.4 185 74.6
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.2e-76 289.3 192 75.5
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.2e-76 289.3 191 75.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-75 287.0 191 72.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.4e-75 286.6 175 77.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.9e-75 286.2 188 75.5
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.9e-75 286.2 192 75.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.4e-75 285.8 175 75.4
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.4e-75 285.8 175 75.4
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.2e-75 285.0 188 71.3
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.2e-75 285.0 185 71.9
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 5.4e-75 284.6 185 73.5
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.5e-74 282.0 191 70.7
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.5e-74 282.0 191 70.2
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 6.0e-74 281.2 191 70.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 6.0e-74 281.2 186 73.1
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.8e-74 280.8 186 71.0
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-73 280.0 188 70.2
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.3e-73 279.3 188 70.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.3e-73 279.3 188 70.2
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.0e-73 278.9 189 68.8
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.0e-73 278.9 172 77.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 3.0e-73 278.9 182 72.0
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 6.6e-73 277.7 172 77.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 6.6e-73 277.7 175 73.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.7e-73 277.3 184 70.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.5e-72 276.6 172 75.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.9e-72 276.2 188 70.2
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.5e-72 275.8 182 69.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.3e-72 275.4 184 69.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 4.3e-72 275.0 172 75.6
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.3e-72 274.2 188 69.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.1e-71 272.7 174 73.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.6e-71 271.9 163 78.5
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.8e-71 271.6 172 74.4
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.8e-71 271.6 172 74.4
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 6.2e-71 271.2 171 73.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 8.1e-71 270.8 170 73.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.1e-70 270.4 187 69.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-70 270.0 172 74.4
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.8e-70 269.6 172 70.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.8e-70 269.6 172 74.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.1e-70 268.9 184 68.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 5.3e-70 268.1 163 76.7
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.9e-70 267.7 174 73.6
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 9.0e-70 267.3 194 66.0
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.6e-69 265.8 182 69.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.4e-69 265.4 172 72.7
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.4e-69 265.4 169 74.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.3e-68 263.5 194 66.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.7e-68 263.1 186 66.7
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.2e-68 262.7 158 78.5
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.2e-68 262.7 172 71.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.8e-68 261.9 172 72.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 8.4e-68 260.8 170 71.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.4e-67 259.2 172 72.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.2e-66 256.9 185 62.7
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 3.5e-66 255.4 184 66.8
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 7.9e-66 254.2 177 67.2
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 7.9e-66 254.2 171 72.5
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.0e-65 253.8 168 71.4
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.0e-65 253.8 134 88.8
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.3e-65 253.4 174 67.2
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.9e-65 251.9 168 71.4
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.1e-65 251.5 156 75.6
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.9e-64 249.6 163 72.4
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.5e-64 249.2 162 72.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.5e-64 249.2 170 70.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.3e-64 248.8 160 73.8
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 9.6e-64 247.3 161 71.4
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.6e-63 245.4 161 72.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.6e-63 245.4 163 68.7
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 3.1e-62 242.3 174 68.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.1e-62 242.3 163 68.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 5.3e-62 241.5 159 71.7
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 5.3e-62 241.5 159 71.7
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 5.3e-62 241.5 172 66.3
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 6.9e-62 241.1 160 72.5
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 9.0e-62 240.7 170 68.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-61 240.4 164 68.9
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.0e-61 239.6 160 69.4
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.6e-61 239.2 164 70.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.4e-61 238.8 172 66.9
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.5e-61 238.4 158 70.3
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.5e-61 238.4 169 64.5
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 9.9e-61 237.3 169 66.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.3e-60 236.9 160 69.4
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.2e-60 236.1 175 64.6
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.9e-60 235.7 172 67.4
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.9e-60 235.0 160 69.4
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.9e-60 235.0 160 69.4
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.9e-59 233.0 163 68.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.2e-59 231.9 160 68.8
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 5.5e-59 231.5 159 67.9
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 5.5e-59 231.5 162 68.5
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 7.1e-59 231.1 168 67.9
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.6e-58 229.9 174 63.8
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.7e-58 229.2 168 61.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.7e-58 229.2 169 63.3
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 6.0e-58 228.0 170 62.4
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.0e-57 227.3 161 70.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-57 227.3 161 70.2
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.8e-57 226.5 169 62.1
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.3e-57 226.1 188 60.6
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.9e-57 225.3 161 69.6
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.1e-57 224.9 161 69.6
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.3e-56 222.2 170 61.8
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.4e-56 221.1 175 65.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.6e-55 219.9 161 62.1
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 6.2e-55 218.0 160 63.1
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 3.1e-54 215.7 134 72.4
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 5.8e-53 211.5 160 61.9
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.6e-53 211.1 141 69.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-52 209.1 158 64.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.9e-51 206.5 163 60.7
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 5.5e-51 204.9 176 59.1
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.5e-51 204.9 192 54.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.5e-51 204.9 166 65.1
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.3e-49 199.5 156 60.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 8.7e-49 197.6 160 60.0
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.3e-48 195.7 156 64.7
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.6e-48 194.1 138 71.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.8e-47 192.6 192 49.5
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.8e-47 191.8 191 54.5
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.4e-46 189.5 133 69.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.3e-44 183.7 142 57.0
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.1e-43 180.6 119 74.8
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.2e-43 179.1 159 54.1
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.2e-43 179.1 162 58.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 8.7e-41 171.0 119 68.1
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 9.7e-40 167.5 125 64.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.2e-39 166.4 177 48.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.1e-38 162.2 177 48.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.1e-38 161.0 177 48.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.2e-35 152.1 116 68.1
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.9e-33 145.6 97 72.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.7e-31 139.0 90 73.3
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 6.9e-30 134.8 171 45.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-29 134.0 150 41.3
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.2e-29 134.0 94 64.9
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 8.5e-28 127.9 91 60.4
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.5e-27 126.3 89 66.3
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 9.7e-24 114.4 73 68.5
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.5e-19 99.8 66 74.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-17 94.4 79 57.0
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.0e-12 75.5 107 41.1
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 9.4e-11 71.2 69 53.6
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.0e-09 67.8 173 28.9
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.0e-09 66.2 52 57.7
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 4.0e-09 65.9 79 44.3
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-08 64.3 36 69.4
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.7e-07 60.5 61 41.0
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.4e-06 57.4 32 75.0


User provided reference genes

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